ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61l17 |
|---|---|
| Clone Library Name | barley_pub |
>PDIA6_MEDSA (P38661) Probable protein disulfide-isomerase A6 precursor (EC| 5.3.4.1) (P5) Length = 364 Score = 130 bits (326), Expect = 4e-30 Identities = 63/103 (61%), Positives = 82/103 (79%) Frame = -1 Query: 582 SKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 403 +KGQLTSEAG+V LD LVK+F +A D+++K + ++IEEE KL G A ++GKIY+ V+K Sbjct: 261 AKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSK 320 Query: 402 KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 274 K L+KGSDY K E +RL RLLEKSISP+KADE +KKNILS + Sbjct: 321 KYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363
>PDIA6_ARATH (O22263) Probable protein disulfide-isomerase A6 precursor (EC| 5.3.4.1) (P5) Length = 361 Score = 127 bits (318), Expect = 3e-29 Identities = 61/103 (59%), Positives = 83/103 (80%) Frame = -1 Query: 582 SKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 403 SKGQLTS+AG+V SLDALVK+ +A++D++K +LS+IEEEA+ L G ++GK+Y+ +AK Sbjct: 255 SKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAK 314 Query: 402 KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 274 ++KGSDY KETERL R+L KSISP KADE +K+NIL+ F Sbjct: 315 SYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357
>ERP38_NEUCR (Q92249) Protein disulfide-isomerase erp38 precursor (EC 5.3.4.1)| (ERp38) Length = 369 Score = 50.1 bits (118), Expect = 5e-06 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Frame = -1 Query: 576 GQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPA-VKHGKIYVNVAKK 400 G L + AG +A+LD +V + A E+ + +E L A +K+ Y+ V K Sbjct: 258 GGLDTVAGTIAALDEIVAKYTGGAS--LAEVAEEAKEAVKSLKNSAELKYADYYLRVLDK 315 Query: 399 ILQKGSDYTKKETERLHRLLEKS-ISPSKADEFAIKKNILSAF 274 L K Y KE RL +L+K ++P+K DE +K N+L F Sbjct: 316 -LSKSEGYATKEFARLEGILKKGGLAPAKVDELTVKVNVLRKF 357
>TIGA_ASPNG (Q00216) Protein disulfide-isomerase tigA precursor (EC 5.3.4.1)| Length = 359 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Frame = -1 Query: 576 GQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKI 397 G L ++AG +ASLD L+ SAAD + + +++ A +L K+ + YV VA K Sbjct: 257 GGLDTKAGTIASLDELIAST-SAAD-----LAAAVKKAATELKD---KYAQYYVKVADK- 306 Query: 396 LQKGSDYTKKETERLHRLLEKSIS-PSKADEFAIKKNILSAF 274 L + ++Y KE RL ++L K S P K D+ + NIL F Sbjct: 307 LSQNAEYAAKELARLEKILAKGGSAPEKVDDLISRSNILRKF 348
>PDI2_SCHPO (O13811) Protein disulfide-isomerase C17H9.14c precursor (EC| 5.3.4.1) Length = 359 Score = 49.3 bits (116), Expect = 8e-06 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Frame = -1 Query: 576 GQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKI 397 G L S AG + + D +F ++ ++ +L K+++ A + S K+ Y V +KI Sbjct: 257 GTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQLALEDSSRWTKY---YKKVFEKI 313 Query: 396 LQKGSDYTKKETERLHRLL-EKSISPSKADEFAIKKNILSAF 274 L ++ KE +RL +LL +KSI+ + AD+F + NIL++F Sbjct: 314 LND-ENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354
>ERP29_MOUSE (P57759) Endoplasmic reticulum protein ERp29 precursor| Length = 262 Score = 48.9 bits (115), Expect = 1e-05 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = -1 Query: 555 GLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 379 G + + DAL +F A+ + R+ IL + ++ + K Y+ + KIL +G D Sbjct: 158 GCLPAYDALAGEFIKASSIEARQAILKQGQDGLLSVKETEKKWASQYLKIMGKILDQGED 217 Query: 378 YTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 274 + E R+ +L+E +S SK +E NIL+AF Sbjct: 218 FPASEMARIGKLIENKMSDSKKEELQKSLNILTAF 252
>ERP29_RAT (P52555) Endoplasmic reticulum protein ERp29 precursor (ERp31)| Length = 260 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -1 Query: 555 GLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 379 G + + DAL F A+ + R+ IL + ++ + + K Y+ + KIL +G D Sbjct: 156 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 215 Query: 378 YTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 274 + E R+ +L+E +S K +E NIL+AF Sbjct: 216 FPASELARISKLIENKMSEGKKEELQRSLNILTAF 250
>ERP29_HUMAN (P30040) Endoplasmic reticulum protein ERp29 precursor (ERp31)| (ERp28) Length = 261 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Frame = -1 Query: 555 GLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 379 G + DAL +F A+ + R+ +L + ++ + + K + Y+ + KIL +G D Sbjct: 156 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGED 215 Query: 378 YTKKETERLHRLLEKS-ISPSKADEFAIKKNILSAF 274 + E R+ RL+EK+ +S K +E NIL+AF Sbjct: 216 FPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 251
>ERP29_CHICK (P81628) Endoplasmic reticulum protein ERp29 (Fragment)| Length = 228 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = -1 Query: 582 SKGQLTSEAGLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVA 406 S G G + D L F S D +R+ +L K ++ K K + Y+ + Sbjct: 138 SNGIYLGMPGCLKEYDVLASKFMSVTDKSERQSLLKKGQQSLEKAKETEKKSAEQYLKIM 197 Query: 405 KKILQKGSDYTKKETERLHRLLEKS 331 KIL++G ++ E R+ +L+EK+ Sbjct: 198 SKILEQGEEFAANEVVRITKLIEKT 222
>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin| heavy chain) Length = 3110 Score = 34.7 bits (78), Expect = 0.21 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%) Frame = -1 Query: 576 GQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK-- 403 G+L++ A+ VKD A+D K++L++I E L G + K+ +VAK Sbjct: 2021 GKLSAIPNDTAAKLQAVKDKARQANDTAKDVLAQITELHQNLDGLKKNYNKLADSVAKTN 2080 Query: 402 ---------KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNI 286 KI+ K + RL++K + P K E +KKNI Sbjct: 2081 AVVKDPSKNKIIADADATVKNLEQEADRLIDK-LKPIKELEDNLKKNI 2127
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 27.7 bits (60), Expect(2) = 1.9 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = -2 Query: 425 RSM*TLQRRYCRRALTIQRRKLRGSIACWRSRSVLPKPMNSPSR 294 R M T RRY R + QRR+ + ++A + + P PM+S ++ Sbjct: 466 RRMATSIRRYMRMRMRTQRRRQQRALARSGADTSFPHPMDSSAK 509 Score = 22.3 bits (46), Expect(2) = 1.9 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = -1 Query: 582 SKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGP 442 S+G E L+ + A A DD R +++ E +L GP Sbjct: 409 SRGDYFGELALLNNRCAATVAAAGATDDARLRVVTMSERAFTRLLGP 455
>ATPF_BACPF (P22481) ATP synthase B chain (EC 3.6.3.14)| Length = 163 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -1 Query: 582 SKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 403 SK L G++ + ++ + S+A+ RK+ + I E+ L ++ +I N K Sbjct: 25 SKFALKPLLGIMEKREQMINEQISSAEKNRKDSEAFIAEQRQALEQARMEANEIIQNAKK 84 Query: 402 KILQKGSDYTKKETERLHRLLEKSIS 325 Q+G D K R+ E +++ Sbjct: 85 LSEQQGQDIVKAARNDAERIKESAVA 110
>ZN544_HUMAN (Q6NX49) Zinc finger protein 544| Length = 715 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = -3 Query: 415 ERCKEDIAEGL*LYKEGN*EAPSLV-GEVDQSFQSR*IRHQEEHSFSFLLL 266 +R +E+++ + +Y+ G E PSLV G+V QS +R +E+S F++L Sbjct: 97 DRAREELSHHVEVYRSGPEEPPSLVLGKVQD--QSNQLREHQENSLRFMVL 145
>H1_TETTH (P10156) Histone H1| Length = 163 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = -1 Query: 525 KDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSDYTKKETERLH- 349 K H+AA DK+ +E A K P K KK ++K + KKET++ H Sbjct: 78 KTVHAAAGDKKLSKKRPAKEAAKKAINPG-KKAAAQPKSTKKEVKKDNKTAKKETKKDHK 136 Query: 348 ---RLLEKSISPSKAD 310 + +K P+K D Sbjct: 137 PAKKEAKKETKPAKKD 152
>RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) Length = 862 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Frame = -1 Query: 534 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 373 A +KD + A+DK KE+ SK++E EA K ++ +N K +LQ+ ++ Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255 Query: 372 KKETERLHRLLEK 334 +KE + LLE+ Sbjct: 256 RKELHEVCHLLEQ 268
>RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) Length = 862 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Frame = -1 Query: 534 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 373 A +KD + A+DK KE+ SK++E EA K ++ +N K +LQ+ ++ Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255 Query: 372 KKETERLHRLLEK 334 +KE + LLE+ Sbjct: 256 RKELHEVCHLLEQ 268
>RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) (Rabaptin-4) (NY-REN-17 antigen) Length = 862 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Frame = -1 Query: 534 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 373 A +KD + A+DK KE+ SK++E EA K ++ +N K +LQ+ ++ Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255 Query: 372 KKETERLHRLLEK 334 +KE + LLE+ Sbjct: 256 RKELHEVCHLLEQ 268
>PRIA_CHLTR (O84783) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 753 Score = 29.6 bits (65), Expect = 6.6 Identities = 12/23 (52%), Positives = 19/23 (82%) Frame = -1 Query: 396 LQKGSDYTKKETERLHRLLEKSI 328 L K SDYT KET+R+H L+++++ Sbjct: 666 LGKCSDYTLKETQRVHTLIKQNL 688
>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B (eIF-5B)| (Translation initiation factor IF-2) Length = 1220 Score = 29.6 bits (65), Expect = 6.6 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Frame = -1 Query: 579 KGQLTSEAGLVASLDALVKDFHSAADD---------KRKEILSKIEEEAAKLSGPAVKHG 427 K ++T + G++ + + + +A DD K+K+ K E+E K GP+ Sbjct: 282 KSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATV 341 Query: 426 KIYVNVAKKILQKGSDYTKKETERLHRLLE 337 K K+ ++ ++E ER+ RL E Sbjct: 342 KAMQEALAKLKEEEERQKREEEERIKRLEE 371
>Y100_METJA (Q57564) Hypothetical protein MJ0100| Length = 509 Score = 29.3 bits (64), Expect = 8.6 Identities = 19/76 (25%), Positives = 37/76 (48%) Frame = +1 Query: 274 ES*KNVLLDGEFIGFGRTDRLLQQAMEPLSFLLCIVRALLQYLLCNVHIDLSVLDSRTTE 453 E+ K +LDG+F+ R D L + +P+ + +V+ +L H ++S++ E Sbjct: 355 ETLKQWILDGKFLLTERVDTLGRAENKPMKSPITLVKDILSKPPITAHSNISIM-----E 409 Query: 454 LCSLLFNFREDFLPLV 501 +L + LP+V Sbjct: 410 AAKILIKHNINHLPIV 425 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,538,885 Number of Sequences: 219361 Number of extensions: 1543669 Number of successful extensions: 5664 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5662 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
