Clone Name | rbah61l14 |
---|---|
Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 174 bits (442), Expect(2) = 5e-63 Identities = 85/85 (100%), Positives = 85/85 (100%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL Sbjct: 343 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 402 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 ADTYMSQAALGDANQDAMKTGSFYG Sbjct: 403 ADTYMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 5e-63 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -2 Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 134 bits (336), Expect(2) = 3e-45 Identities = 64/85 (75%), Positives = 75/85 (88%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRK+V S G+E IGKRLVNSR+GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQL Sbjct: 353 YDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQL 412 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 A+TY+SQAALGDAN DA+ G+FYG Sbjct: 413 AETYLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 3e-45 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -2 Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 134 bits (338), Expect(2) = 4e-45 Identities = 62/85 (72%), Positives = 74/85 (87%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 Y DEVRKWV G++ IGK+LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQL Sbjct: 353 YHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQL 412 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 AD YMS+AALGDAN DA+K G+FYG Sbjct: 413 ADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 4e-45 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -2 Query: 261 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 135 bits (341), Expect(2) = 1e-44 Identities = 61/85 (71%), Positives = 76/85 (89%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 Y DEVRKWV S G++N+GK+LVNS+DGP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQL Sbjct: 351 YHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQL 410 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 AD YMS AALGDAN+DA+ G+F+G Sbjct: 411 ADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 1e-44 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -2 Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 151 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 150 bits (379), Expect = 2e-36 Identities = 69/85 (81%), Positives = 78/85 (91%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWVG G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQL Sbjct: 340 YDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQL 399 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 AD Y+S+AALG AN DAMKTG+FYG Sbjct: 400 ADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 149 bits (377), Expect = 4e-36 Identities = 69/85 (81%), Positives = 79/85 (92%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWV TG+ENIGKRLVNSR+GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQL Sbjct: 343 YDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQL 402 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 A+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 403 AEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 144 bits (362), Expect = 2e-34 Identities = 65/85 (76%), Positives = 78/85 (91%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKW+ G+++IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQL Sbjct: 353 YDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQL 412 Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306 AD Y+S+AALGDAN DAM TG+FYG Sbjct: 413 ADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 141 bits (356), Expect = 1e-33 Identities = 63/84 (75%), Positives = 78/84 (92%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVR+WV TG+ENI ++LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQL Sbjct: 349 YDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQL 408 Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309 AD Y+++AALG+AN+DAMKTGSF+ Sbjct: 409 ADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 137 bits (345), Expect = 2e-32 Identities = 62/83 (74%), Positives = 76/83 (91%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWV G++ IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQL Sbjct: 353 YDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQL 412 Query: 380 ADTYMSQAALGDANQDAMKTGSF 312 AD YMS+AALGDANQDA+K G+F Sbjct: 413 ADKYMSEAALGDANQDAIKRGTF 435
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 136 bits (342), Expect = 5e-32 Identities = 64/84 (76%), Positives = 73/84 (86%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWV TGIE IG +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQL Sbjct: 357 YDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQL 416 Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309 AD Y+ +AALGDAN DA+ GSF+ Sbjct: 417 ADKYLKEAALGDANADAINNGSFF 440
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 136 bits (342), Expect = 5e-32 Identities = 65/83 (78%), Positives = 74/83 (89%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWV TGIE IG +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQL Sbjct: 357 YDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQL 416 Query: 380 ADTYMSQAALGDANQDAMKTGSF 312 A+TY+ +AALGDAN DA+ TG+F Sbjct: 417 AETYLKEAALGDANADAINTGNF 439
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 135 bits (341), Expect = 6e-32 Identities = 64/81 (79%), Positives = 74/81 (91%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKWV TGIE IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQL Sbjct: 352 YDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQL 411 Query: 380 ADTYMSQAALGDANQDAMKTG 318 A+TY+ +AALGDAN DA+ TG Sbjct: 412 AETYLKEAALGDANADAINTG 432
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 129 bits (325), Expect = 4e-30 Identities = 56/84 (66%), Positives = 77/84 (91%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKW+ G++ GK+LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQL Sbjct: 355 YDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQL 414 Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309 AD Y+++AALG+AN+DA+K+GSF+ Sbjct: 415 ADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 129 bits (323), Expect = 7e-30 Identities = 56/84 (66%), Positives = 76/84 (90%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKW+ G++++GK+LVNS++GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQL Sbjct: 357 YDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQL 416 Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309 AD Y+++AALG+AN+DA+K+GSF+ Sbjct: 417 ADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 94.4 bits (233), Expect = 2e-19 Identities = 42/60 (70%), Positives = 51/60 (85%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDDEVRKW G+E IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 350 YDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 73.2 bits (178), Expect = 5e-13 Identities = 36/70 (51%), Positives = 49/70 (70%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YDD VR+W+ TG++ IG++LVN+R V + M + L++YG LV EQ+NVKRVQL Sbjct: 326 YDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQL 384 Query: 380 ADTYMSQAAL 351 AD Y+S A L Sbjct: 385 ADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 58.2 bits (139), Expect = 2e-08 Identities = 24/64 (37%), Positives = 40/64 (62%) Frame = -3 Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381 YD+++R ++ G EN+ R+VNS +GP F++P T+ L+E + +V EQ ++ QL Sbjct: 226 YDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQL 285 Query: 380 ADTY 369 D Y Sbjct: 286 VDEY 289
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = -3 Query: 476 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 321 VTF +T E K +E H +QE NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 320 GSFYG*KILHTHPPSLAA 267 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 30.8 bits (68), Expect = 2.7 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -3 Query: 488 RDGPVTFEQPKMTVEK 441 R+GP TFEQP MT+EK Sbjct: 17 REGPPTFEQPAMTIEK 32
>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)| Length = 464 Score = 30.0 bits (66), Expect = 4.6 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -3 Query: 476 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 321 VTF +T E K +E H +QE NVK + + D A N A +T Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337 Query: 320 GSFYG*KILHTHPPSLAA 267 F I+ HP ++A Sbjct: 338 KMFTAQVIIMNHPGQISA 355
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 373 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 477 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor| Length = 521 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Frame = -3 Query: 539 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 432 W+GS I+ G+RL++SRD +T E P++ ++ LLE Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Frame = -3 Query: 476 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 321 VTF +T E K +E H + E NVK V + D A N M+ Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337 Query: 320 GSFYG*KILHTHPPSLAA 267 GSF I+ HP + A Sbjct: 338 GSFTAQVIILNHPGQIGA 355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,972,173 Number of Sequences: 219361 Number of extensions: 1607349 Number of successful extensions: 4700 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4552 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4698 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)