>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  174 bits (442), Expect(2) = 5e-63
 Identities = 85/85 (100%), Positives = 85/85 (100%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL
Sbjct: 343 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 402

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           ADTYMSQAALGDANQDAMKTGSFYG
Sbjct: 403 ADTYMSQAALGDANQDAMKTGSFYG 427



 Score = 86.3 bits (212), Expect(2) = 5e-63
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -2

Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  134 bits (336), Expect(2) = 3e-45
 Identities = 64/85 (75%), Positives = 75/85 (88%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EKL+EYG+MLV EQ+NVKRVQL
Sbjct: 353 YDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQL 412

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           A+TY+SQAALGDAN DA+  G+FYG
Sbjct: 413 AETYLSQAALGDANADAIGRGTFYG 437



 Score = 67.8 bits (164), Expect(2) = 3e-45
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  134 bits (338), Expect(2) = 4e-45
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           Y DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQL
Sbjct: 353 YHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQL 412

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           AD YMS+AALGDAN DA+K G+FYG
Sbjct: 413 ADKYMSEAALGDANNDAIKRGTFYG 437



 Score = 66.6 bits (161), Expect(2) = 4e-45
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -2

Query: 261 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  135 bits (341), Expect(2) = 1e-44
 Identities = 61/85 (71%), Positives = 76/85 (89%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           Y DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++KL+EYG+MLVQEQ+NVKRVQL
Sbjct: 351 YHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQL 410

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           AD YMS AALGDAN+DA+  G+F+G
Sbjct: 411 ADQYMSSAALGDANKDAIDRGTFFG 435



 Score = 63.9 bits (154), Expect(2) = 1e-44
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -2

Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 151
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  150 bits (379), Expect = 2e-36
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQL
Sbjct: 340 YDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQL 399

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           AD Y+S+AALG AN DAMKTG+FYG
Sbjct: 400 ADKYLSEAALGQANDDAMKTGAFYG 424

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  149 bits (377), Expect = 4e-36
 Identities = 69/85 (81%), Positives = 79/85 (92%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQL
Sbjct: 343 YDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQL 402

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           A+ Y+S+AALGDAN DAMKTGSFYG
Sbjct: 403 AEQYLSEAALGDANSDAMKTGSFYG 427

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  144 bits (362), Expect = 2e-34
 Identities = 65/85 (76%), Positives = 78/85 (91%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQL
Sbjct: 353 YDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQL 412

Query: 380 ADTYMSQAALGDANQDAMKTGSFYG 306
           AD Y+S+AALGDAN DAM TG+FYG
Sbjct: 413 ADKYLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  141 bits (356), Expect = 1e-33
 Identities = 63/84 (75%), Positives = 78/84 (92%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQL
Sbjct: 349 YDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQL 408

Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309
           AD Y+++AALG+AN+DAMKTGSF+
Sbjct: 409 ADKYLNEAALGEANEDAMKTGSFF 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  137 bits (345), Expect = 2e-32
 Identities = 62/83 (74%), Positives = 76/83 (91%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQL
Sbjct: 353 YDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQL 412

Query: 380 ADTYMSQAALGDANQDAMKTGSF 312
           AD YMS+AALGDANQDA+K G+F
Sbjct: 413 ADKYMSEAALGDANQDAIKRGTF 435

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  136 bits (342), Expect = 5e-32
 Identities = 64/84 (76%), Positives = 73/84 (86%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQL
Sbjct: 357 YDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQL 416

Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309
           AD Y+ +AALGDAN DA+  GSF+
Sbjct: 417 ADKYLKEAALGDANADAINNGSFF 440

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  136 bits (342), Expect = 5e-32
 Identities = 65/83 (78%), Positives = 74/83 (89%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQL
Sbjct: 357 YDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQL 416

Query: 380 ADTYMSQAALGDANQDAMKTGSF 312
           A+TY+ +AALGDAN DA+ TG+F
Sbjct: 417 AETYLKEAALGDANADAINTGNF 439

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  135 bits (341), Expect = 6e-32
 Identities = 64/81 (79%), Positives = 74/81 (91%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQL
Sbjct: 352 YDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQL 411

Query: 380 ADTYMSQAALGDANQDAMKTG 318
           A+TY+ +AALGDAN DA+ TG
Sbjct: 412 AETYLKEAALGDANADAINTG 432

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  129 bits (325), Expect = 4e-30
 Identities = 56/84 (66%), Positives = 77/84 (91%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQL
Sbjct: 355 YDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQL 414

Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309
           AD Y+++AALG+AN+DA+K+GSF+
Sbjct: 415 ADKYLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  129 bits (323), Expect = 7e-30
 Identities = 56/84 (66%), Positives = 76/84 (90%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQL
Sbjct: 357 YDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQL 416

Query: 380 ADTYMSQAALGDANQDAMKTGSFY 309
           AD Y+++AALG+AN+DA+K+GSF+
Sbjct: 417 ADQYLNEAALGNANEDAIKSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 51/60 (85%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 350 YDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 36/70 (51%), Positives = 49/70 (70%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YDD VR+W+  TG++ IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQL
Sbjct: 326 YDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQL 384

Query: 380 ADTYMSQAAL 351
           AD Y+S A L
Sbjct: 385 ADAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 24/64 (37%), Positives = 40/64 (62%)
 Frame = -3

Query: 560 YDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 381
           YD+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL
Sbjct: 226 YDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQL 285

Query: 380 ADTY 369
            D Y
Sbjct: 286 VDEY 289

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = -3

Query: 476 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 321
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 320 GSFYG*KILHTHPPSLAA 267
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3

Query: 488 RDGPVTFEQPKMTVEK 441
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -3

Query: 476 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 321
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 320 GSFYG*KILHTHPPSLAA 267
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 373 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 477
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -3

Query: 539 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 432
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -3

Query: 476 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 321
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 320 GSFYG*KILHTHPPSLAA 267
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,972,173
Number of Sequences: 219361
Number of extensions: 1607349
Number of successful extensions: 4700
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4698
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)