Clone Name | rbah62a13 |
---|---|
Clone Library Name | barley_pub |
>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1193 Score = 137 bits (346), Expect = 1e-32 Identities = 62/136 (45%), Positives = 92/136 (67%) Frame = -1 Query: 513 SSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWS 334 S YI D T VRTL + + L+ R + LNP++YEG++K G EGVR+IE ++TNT+GWS Sbjct: 1055 SVYIGDQTRGGGTVRTLKDQIALETRARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWS 1114 Query: 333 ATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLE 154 AT+ QV+ WVY+ + TF+ DE MR+RL + NP + ++ + LEA+ R YW+ + L Sbjct: 1115 ATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPEASVRMAERLLEASARNYWQPDAETLA 1174 Query: 153 RLRELYSEVEDKIEGI 106 L+ E+ED++EGI Sbjct: 1175 ALQGAADELEDRLEGI 1190
>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1194 Score = 134 bits (338), Expect = 1e-31 Identities = 61/134 (45%), Positives = 90/134 (67%) Frame = -1 Query: 507 YIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSAT 328 YI D T VRTL + + L+ R + LNP++YEG++K G EGVR+IE ++TNT+GWSAT Sbjct: 1058 YIGDQTRGAGTVRTLQDQIALETRARSLNPKFYEGLLKHGAEGVRQIEAQVTNTLGWSAT 1117 Query: 327 SGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERL 148 +GQV+ WVY+ + TF+ D+EMR+RL N + ++ Q LEA+ R YW+ L L Sbjct: 1118 TGQVEPWVYQRLSETFVLDDEMRERLASLNSAASSRMAQRLLEASDRNYWQPDPATLAAL 1177 Query: 147 RELYSEVEDKIEGI 106 + E+ED++EG+ Sbjct: 1178 QAAADELEDRMEGV 1191
>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1279 Score = 124 bits (312), Expect = 1e-28 Identities = 51/131 (38%), Positives = 91/131 (69%) Frame = -1 Query: 498 DTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQ 319 ++ T++ ++ +++R++ R+KLLNP+W+EGM+K G+ G EI R+T +GW A + Sbjct: 1145 ESFTSDIKLDEADKSLRVEYRSKLLNPKWFEGMLKHGHSGAGEISNRVTYMLGWDAVTKS 1204 Query: 318 VDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLREL 139 VD+WVY++ T+ D EMR+RL NP + + ++ LEA+GRG W+ + +E L+E+ Sbjct: 1205 VDDWVYKKTAETYALDPEMRERLATLNPQAIKNIVGRMLEAHGRGMWKADQSMIEELQEI 1264 Query: 138 YSEVEDKIEGI 106 Y+++ED++EG+ Sbjct: 1265 YADLEDRLEGM 1275
>Y1441_METJA (Q58836) Hypothetical protein MJ1441| Length = 1226 Score = 121 bits (303), Expect = 1e-27 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 1/134 (0%) Frame = -1 Query: 510 SYIADTTTAN-AQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWS 334 +Y DT N +VRTL E + + TKLLNP+W EGM + GY+G +I KR+ GWS Sbjct: 1061 AYYGDTRNPNNVEVRTLKEEIERVSLTKLLNPKWIEGMKRHGYKGAGDIAKRIGRVYGWS 1120 Query: 333 ATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLE 154 AT+ +V+NW+++E TF+++EE RK + N + ++ + LEA RG W+T+E N+E Sbjct: 1121 ATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWKTTEGNIE 1180 Query: 153 RLRELYSEVEDKIE 112 L+ Y E+E IE Sbjct: 1181 ELKRAYLEIEGDIE 1194
>Y908_METJA (Q58318) Hypothetical protein MJ0908| Length = 1232 Score = 104 bits (259), Expect = 2e-22 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Frame = -1 Query: 510 SYIADTTTANAQVRT--LSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGW 337 SY+ DT+ N +RT L E + RTK++NP+W EGM + GY+G + K + + W Sbjct: 1096 SYVGDTSNPN-DIRTKHLKEEGKEIFRTKIMNPKWIEGMKRHGYKGAADFSKYVDHMFAW 1154 Query: 336 SATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNL 157 ATSG +D+W+YE+ ++ D++M + + NP + + + LEA RG W+ E+ Sbjct: 1155 DATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKADEEMK 1214 Query: 156 ERLRELYSEVEDKIE 112 E+LR+ Y E+E IE Sbjct: 1215 EKLRKKYLEIEGMIE 1229
>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)| (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN subunit) Length = 1275 Score = 70.5 bits (171), Expect = 3e-12 Identities = 34/99 (34%), Positives = 56/99 (56%) Frame = -1 Query: 474 VRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEE 295 +R+L E + R +++NP+W +G+M+ GY+G EI + ++AT+G V + +E Sbjct: 1151 IRSLEEEIGRVVRARVVNPKWIDGVMRHGYKGAFEIAATVDYMFAFAATTGAVRDHHFEA 1210 Query: 294 ANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYW 178 A FI DE + + D NP +F +L + LEA R W Sbjct: 1211 AYQAFIVDERVADFMRDKNPAAFAELAERLLEAIDRNLW 1249
>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 32.3 bits (72), Expect = 0.78 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = -1 Query: 336 SATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNL 157 SA + +N+ YEE T E E+ +R + + + K + TFL+ GR E Sbjct: 25 SAFNKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKEMYTFLDKGGRSLTLRPEGTA 84 Query: 156 ERLR-----ELYSEVEDKIE 112 +R +LY EV I+ Sbjct: 85 SVVRAFVEHKLYGEVSQPIK 104
>UVRB_THET8 (Q56243) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 665 Score = 31.2 bits (69), Expect = 1.7 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 18/112 (16%) Frame = -1 Query: 384 EGVREIEKRLTNTVGWSATSGQVDNWVY----EEANTTFIEDEEMRKRLMDT-------N 238 EG E+ L T+G +A + + + W+Y EA IE+ R+ L + Sbjct: 520 EGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGIT 579 Query: 237 PNSFRKLLQTFLEANGRGYWE-------TSEDNLERLRELYSEVEDKIEGID 103 P + RK ++ + GY E + ED ER+ EL + E +D Sbjct: 580 PETVRKEVRAVIRP--EGYEEAPLEADLSGEDLRERIAELELAMWQAAEALD 629
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = -1 Query: 393 SGYEGVREIEKRLTNTVGWSATSGQVDN---WVYEEA 292 SG + + ++EK++ N V W T ++ N VYEEA Sbjct: 721 SGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEA 757
>PQQF_KLEPN (P27508) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)| (Pyrroloquinoline quinone biosynthesis protein F) Length = 761 Score = 29.6 bits (65), Expect = 5.0 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 15/62 (24%) Frame = +1 Query: 112 FDLVFNLRVELPEP-------FQVIL*--CLPVAS------AICF*EGLKQLPERIGISV 246 FD + L ++LPEP Q IL LPVAS +I + QLPER+G S Sbjct: 490 FDGSWQLTLQLPEPGRRPEAILQAILRQLALPVASLTPSPESIAIRHLMAQLPERLGTSG 549 Query: 247 HQ 252 HQ Sbjct: 550 HQ 551
>CRJ1C_TRICY (P40821) Crystallin J1C| Length = 322 Score = 29.3 bits (64), Expect = 6.6 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%) Frame = -1 Query: 357 LTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKR-----------LMDTNPNSFRKLLQ 211 +T V A SGQ+D++V + T D +R L +P +FRK+L Sbjct: 150 ITPLVAMYAGSGQLDSYVEQVVRVTLNNDRSVRTAQFFAKLLEHYILHGRDPEAFRKVLN 209 Query: 210 TFLEANGRGYWE 175 F + + W+ Sbjct: 210 NFPDDQYKFEWQ 221
>CRJ1A_TRICY (Q03442) Crystallin J1A| Length = 322 Score = 29.3 bits (64), Expect = 6.6 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%) Frame = -1 Query: 357 LTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKR-----------LMDTNPNSFRKLLQ 211 +T V A SGQ+D++V + T D +R L +P +FRK+L Sbjct: 150 ITPLVAMYAGSGQLDSYVEQVVRVTLNNDRSVRTAQFFAKLLEHYILHGRDPEAFRKVLN 209 Query: 210 TFLEANGRGYWE 175 F + + W+ Sbjct: 210 NFPDDQYKFEWQ 221
>NAPA2_PHOPR (Q6LQJ3) Periplasmic nitrate reductase 2 precursor (EC 1.7.99.4)| Length = 830 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/75 (30%), Positives = 32/75 (42%) Frame = -1 Query: 414 WYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNP 235 W E K G G E +L + + + + D W E + F DE K L+D+NP Sbjct: 530 WVE---KEGGFGNAERRTQLWHQMVEAPGESKPDLWQLMEFSKRFKTDEVWPKELLDSNP 586 Query: 234 NSFRKLLQTFLEANG 190 + K L L NG Sbjct: 587 DYKGKTLFDVLFING 601
>EGLX_HUMAN (Q9NXG6) Putative HIF-prolyl hydroxylase PH-4 (EC 1.14.11.-)| (Hypoxia-inducible factor prolyl 4-hydroxylase) Length = 502 Score = 28.9 bits (63), Expect = 8.6 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -1 Query: 303 YEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEAN-GRGYWETSEDNLERLRELYSEV 127 YEEA +T + RL+D N + +L + + G G+W T E ++E+Y+ + Sbjct: 179 YEEAMSTMQVSQLDLFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPES----IQEMYAAI 234 Query: 126 EDKIEG 109 + +G Sbjct: 235 KADPDG 240
>NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)| Length = 1578 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 321 QVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGR 187 QVDNW E T D E R+ + P + + ++ +L+ GR Sbjct: 1197 QVDNWPVNEHYPTGNTDNERRQMVKQKIPFKYNRPVEEWLQEKGR 1241
>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family| member C (Tumorigenic protein pp32r1) Length = 234 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -1 Query: 252 LMDTNPNSFRKLLQ-TFLEANGRGYWETSEDNLERLRELYSEVEDKIEGID 103 L D N F+ LLQ T+L++ YW+ E YS++ED +EG+D Sbjct: 124 LNDYGENVFKLLLQLTYLDSC---YWDHKEAP-------YSDIEDHVEGLD 164
>CGRF1_RAT (P97587) Cell growth regulator with RING finger domain 1 (Cell| growth regulatory gene 19 protein) Length = 332 Score = 28.9 bits (63), Expect = 8.6 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +1 Query: 457 LRQCTHLCICCGCVCYVR 510 L C H C+C CVCY + Sbjct: 286 LLPCRHACLCDSCVCYFK 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,834,595 Number of Sequences: 219361 Number of extensions: 1404974 Number of successful extensions: 4780 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4775 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)