>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1193

 Score =  137 bits (346), Expect = 1e-32
 Identities = 62/136 (45%), Positives = 92/136 (67%)
 Frame = -1

Query: 513  SSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWS 334
            S YI D T     VRTL + + L+ R + LNP++YEG++K G EGVR+IE ++TNT+GWS
Sbjct: 1055 SVYIGDQTRGGGTVRTLKDQIALETRARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWS 1114

Query: 333  ATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLE 154
            AT+ QV+ WVY+  + TF+ DE MR+RL + NP +  ++ +  LEA+ R YW+   + L 
Sbjct: 1115 ATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPEASVRMAERLLEASARNYWQPDAETLA 1174

Query: 153  RLRELYSEVEDKIEGI 106
             L+    E+ED++EGI
Sbjct: 1175 ALQGAADELEDRLEGI 1190

>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1194

 Score =  134 bits (338), Expect = 1e-31
 Identities = 61/134 (45%), Positives = 90/134 (67%)
 Frame = -1

Query: 507  YIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSAT 328
            YI D T     VRTL + + L+ R + LNP++YEG++K G EGVR+IE ++TNT+GWSAT
Sbjct: 1058 YIGDQTRGAGTVRTLQDQIALETRARSLNPKFYEGLLKHGAEGVRQIEAQVTNTLGWSAT 1117

Query: 327  SGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERL 148
            +GQV+ WVY+  + TF+ D+EMR+RL   N  +  ++ Q  LEA+ R YW+     L  L
Sbjct: 1118 TGQVEPWVYQRLSETFVLDDEMRERLASLNSAASSRMAQRLLEASDRNYWQPDPATLAAL 1177

Query: 147  RELYSEVEDKIEGI 106
            +    E+ED++EG+
Sbjct: 1178 QAAADELEDRMEGV 1191

>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1279

 Score =  124 bits (312), Expect = 1e-28
 Identities = 51/131 (38%), Positives = 91/131 (69%)
 Frame = -1

Query: 498  DTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQ 319
            ++ T++ ++    +++R++ R+KLLNP+W+EGM+K G+ G  EI  R+T  +GW A +  
Sbjct: 1145 ESFTSDIKLDEADKSLRVEYRSKLLNPKWFEGMLKHGHSGAGEISNRVTYMLGWDAVTKS 1204

Query: 318  VDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLREL 139
            VD+WVY++   T+  D EMR+RL   NP + + ++   LEA+GRG W+  +  +E L+E+
Sbjct: 1205 VDDWVYKKTAETYALDPEMRERLATLNPQAIKNIVGRMLEAHGRGMWKADQSMIEELQEI 1264

Query: 138  YSEVEDKIEGI 106
            Y+++ED++EG+
Sbjct: 1265 YADLEDRLEGM 1275

>Y1441_METJA (Q58836) Hypothetical protein MJ1441|
          Length = 1226

 Score =  121 bits (303), Expect = 1e-27
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
 Frame = -1

Query: 510  SYIADTTTAN-AQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWS 334
            +Y  DT   N  +VRTL E +   + TKLLNP+W EGM + GY+G  +I KR+    GWS
Sbjct: 1061 AYYGDTRNPNNVEVRTLKEEIERVSLTKLLNPKWIEGMKRHGYKGAGDIAKRIGRVYGWS 1120

Query: 333  ATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLE 154
            AT+ +V+NW+++E   TF+++EE RK   + N  +  ++ +  LEA  RG W+T+E N+E
Sbjct: 1121 ATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWKTTEGNIE 1180

Query: 153  RLRELYSEVEDKIE 112
             L+  Y E+E  IE
Sbjct: 1181 ELKRAYLEIEGDIE 1194

>Y908_METJA (Q58318) Hypothetical protein MJ0908|
          Length = 1232

 Score =  104 bits (259), Expect = 2e-22
 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
 Frame = -1

Query: 510  SYIADTTTANAQVRT--LSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGW 337
            SY+ DT+  N  +RT  L E  +   RTK++NP+W EGM + GY+G  +  K + +   W
Sbjct: 1096 SYVGDTSNPN-DIRTKHLKEEGKEIFRTKIMNPKWIEGMKRHGYKGAADFSKYVDHMFAW 1154

Query: 336  SATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNL 157
             ATSG +D+W+YE+    ++ D++M +   + NP +   + +  LEA  RG W+  E+  
Sbjct: 1155 DATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKADEEMK 1214

Query: 156  ERLRELYSEVEDKIE 112
            E+LR+ Y E+E  IE
Sbjct: 1215 EKLRKKYLEIEGMIE 1229

>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)|
            (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN
            subunit)
          Length = 1275

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 34/99 (34%), Positives = 56/99 (56%)
 Frame = -1

Query: 474  VRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEE 295
            +R+L E +    R +++NP+W +G+M+ GY+G  EI   +     ++AT+G V +  +E 
Sbjct: 1151 IRSLEEEIGRVVRARVVNPKWIDGVMRHGYKGAFEIAATVDYMFAFAATTGAVRDHHFEA 1210

Query: 294  ANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYW 178
            A   FI DE +   + D NP +F +L +  LEA  R  W
Sbjct: 1211 AYQAFIVDERVADFMRDKNPAAFAELAERLLEAIDRNLW 1249

>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -1

Query: 336 SATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNL 157
           SA +   +N+ YEE  T   E  E+ +R +  + +   K + TFL+  GR      E   
Sbjct: 25  SAFNKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKEMYTFLDKGGRSLTLRPEGTA 84

Query: 156 ERLR-----ELYSEVEDKIE 112
             +R     +LY EV   I+
Sbjct: 85  SVVRAFVEHKLYGEVSQPIK 104

>UVRB_THET8 (Q56243) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 665

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
 Frame = -1

Query: 384 EGVREIEKRLTNTVGWSATSGQVDNWVY----EEANTTFIEDEEMRKRLMDT-------N 238
           EG    E+ L  T+G +A + + + W+Y     EA    IE+   R+ L +         
Sbjct: 520 EGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGIT 579

Query: 237 PNSFRKLLQTFLEANGRGYWE-------TSEDNLERLRELYSEVEDKIEGID 103
           P + RK ++  +     GY E       + ED  ER+ EL   +    E +D
Sbjct: 580 PETVRKEVRAVIRP--EGYEEAPLEADLSGEDLRERIAELELAMWQAAEALD 629

>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4|
          Length = 980

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 393 SGYEGVREIEKRLTNTVGWSATSGQVDN---WVYEEA 292
           SG + + ++EK++ N V W  T  ++ N    VYEEA
Sbjct: 721 SGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEA 757

>PQQF_KLEPN (P27508) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)|
           (Pyrroloquinoline quinone biosynthesis protein F)
          Length = 761

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = +1

Query: 112 FDLVFNLRVELPEP-------FQVIL*--CLPVAS------AICF*EGLKQLPERIGISV 246
           FD  + L ++LPEP        Q IL    LPVAS      +I     + QLPER+G S 
Sbjct: 490 FDGSWQLTLQLPEPGRRPEAILQAILRQLALPVASLTPSPESIAIRHLMAQLPERLGTSG 549

Query: 247 HQ 252
           HQ
Sbjct: 550 HQ 551

>CRJ1C_TRICY (P40821) Crystallin J1C|
          Length = 322

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
 Frame = -1

Query: 357 LTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKR-----------LMDTNPNSFRKLLQ 211
           +T  V   A SGQ+D++V +    T   D  +R             L   +P +FRK+L 
Sbjct: 150 ITPLVAMYAGSGQLDSYVEQVVRVTLNNDRSVRTAQFFAKLLEHYILHGRDPEAFRKVLN 209

Query: 210 TFLEANGRGYWE 175
            F +   +  W+
Sbjct: 210 NFPDDQYKFEWQ 221

>CRJ1A_TRICY (Q03442) Crystallin J1A|
          Length = 322

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
 Frame = -1

Query: 357 LTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKR-----------LMDTNPNSFRKLLQ 211
           +T  V   A SGQ+D++V +    T   D  +R             L   +P +FRK+L 
Sbjct: 150 ITPLVAMYAGSGQLDSYVEQVVRVTLNNDRSVRTAQFFAKLLEHYILHGRDPEAFRKVLN 209

Query: 210 TFLEANGRGYWE 175
            F +   +  W+
Sbjct: 210 NFPDDQYKFEWQ 221

>NAPA2_PHOPR (Q6LQJ3) Periplasmic nitrate reductase 2 precursor (EC 1.7.99.4)|
          Length = 830

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = -1

Query: 414 WYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNP 235
           W E   K G  G  E   +L + +  +    + D W   E +  F  DE   K L+D+NP
Sbjct: 530 WVE---KEGGFGNAERRTQLWHQMVEAPGESKPDLWQLMEFSKRFKTDEVWPKELLDSNP 586

Query: 234 NSFRKLLQTFLEANG 190
           +   K L   L  NG
Sbjct: 587 DYKGKTLFDVLFING 601

>EGLX_HUMAN (Q9NXG6) Putative HIF-prolyl hydroxylase PH-4 (EC 1.14.11.-)|
           (Hypoxia-inducible factor prolyl 4-hydroxylase)
          Length = 502

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 303 YEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEAN-GRGYWETSEDNLERLRELYSEV 127
           YEEA +T    +    RL+D N +   +L +   +   G G+W T E     ++E+Y+ +
Sbjct: 179 YEEAMSTMQVSQLDLFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPES----IQEMYAAI 234

Query: 126 EDKIEG 109
           +   +G
Sbjct: 235 KADPDG 240

>NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)|
          Length = 1578

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 321  QVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGR 187
            QVDNW   E   T   D E R+ +    P  + + ++ +L+  GR
Sbjct: 1197 QVDNWPVNEHYPTGNTDNERRQMVKQKIPFKYNRPVEEWLQEKGR 1241

>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member C (Tumorigenic protein pp32r1)
          Length = 234

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 252 LMDTNPNSFRKLLQ-TFLEANGRGYWETSEDNLERLRELYSEVEDKIEGID 103
           L D   N F+ LLQ T+L++    YW+  E         YS++ED +EG+D
Sbjct: 124 LNDYGENVFKLLLQLTYLDSC---YWDHKEAP-------YSDIEDHVEGLD 164

>CGRF1_RAT (P97587) Cell growth regulator with RING finger domain 1 (Cell|
           growth regulatory gene 19 protein)
          Length = 332

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 457 LRQCTHLCICCGCVCYVR 510
           L  C H C+C  CVCY +
Sbjct: 286 LLPCRHACLCDSCVCYFK 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,834,595
Number of Sequences: 219361
Number of extensions: 1404974
Number of successful extensions: 4780
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4775
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)