Clone Name | rbah61l13 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B09, full insert sequence Length = 694 Score = 125 bits (63), Expect = 1e-25 Identities = 121/141 (85%) Strand = Plus / Minus Query: 189 ggcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangt 248 |||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | Sbjct: 575 ggcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcagga 516 Query: 249 gatgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctc 308 || ||||||||| || || || |||| || ||||||| ||||||| | || || ||||| Sbjct: 515 gaagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctc 456 Query: 309 ctggcatatgctgcattttct 329 ||||||||||||||||||||| Sbjct: 455 ctggcatatgctgcattttct 435
>ref|XM_473782.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 123 bits (62), Expect = 4e-25 Identities = 120/140 (85%) Strand = Plus / Minus Query: 190 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangtg 249 ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | | Sbjct: 1088 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1029 Query: 250 atgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctcc 309 | ||||||||| || || || |||| || ||||||| ||||||| | || || |||||| Sbjct: 1028 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 969 Query: 310 tggcatatgctgcattttct 329 |||||||||||||||||||| Sbjct: 968 tggcatatgctgcattttct 949
>dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full insert sequence Length = 1493 Score = 123 bits (62), Expect = 4e-25 Identities = 120/140 (85%) Strand = Plus / Minus Query: 190 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangtg 249 ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | | Sbjct: 1243 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1184 Query: 250 atgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctcc 309 | ||||||||| || || || |||| || ||||||| ||||||| | || || |||||| Sbjct: 1183 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 1124 Query: 310 tggcatatgctgcattttct 329 |||||||||||||||||||| Sbjct: 1123 tggcatatgctgcattttct 1104
>dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D07, full insert sequence Length = 1363 Score = 123 bits (62), Expect = 4e-25 Identities = 120/140 (85%) Strand = Plus / Minus Query: 190 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangtg 249 ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | | Sbjct: 1243 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1184 Query: 250 atgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctcc 309 | ||||||||| || || || |||| || ||||||| ||||||| | || || |||||| Sbjct: 1183 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 1124 Query: 310 tggcatatgctgcattttct 329 |||||||||||||||||||| Sbjct: 1123 tggcatatgctgcattttct 1104
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 87.7 bits (44), Expect = 2e-14 Identities = 102/122 (83%) Strand = Plus / Plus Query: 190 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangtg 249 ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | | Sbjct: 107109 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 107168 Query: 250 atgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctcc 309 | ||||||||| || || || |||| || ||||||| ||||||| | || || |||||| Sbjct: 107169 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 107228 Query: 310 tg 311 || Sbjct: 107229 tg 107230 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 308 cctggcatatgctgcattttct 329 |||||||||||||||||||||| Sbjct: 107325 cctggcatatgctgcattttct 107346
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 2e-14 Identities = 102/122 (83%) Strand = Plus / Plus Query: 190 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangtg 249 ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | | Sbjct: 30473732 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 30473791 Query: 250 atgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctcc 309 | ||||||||| || || || |||| || ||||||| ||||||| | || || |||||| Sbjct: 30473792 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 30473851 Query: 310 tg 311 || Sbjct: 30473852 tg 30473853 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 308 cctggcatatgctgcattttct 329 |||||||||||||||||||||| Sbjct: 30473948 cctggcatatgctgcattttct 30473969
>dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040F16, full insert sequence Length = 2340 Score = 87.7 bits (44), Expect = 2e-14 Identities = 102/122 (83%) Strand = Plus / Plus Query: 190 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcangtg 249 ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||| | | Sbjct: 593 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 652 Query: 250 atgtggtagtagtgcttacacgccatgttccccacctnctcaccaccagagtactcctcc 309 | ||||||||| || || || |||| || ||||||| ||||||| | || || |||||| Sbjct: 653 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 712 Query: 310 tg 311 || Sbjct: 713 tg 714 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 308 cctggcatatgctgcattttct 329 |||||||||||||||||||||| Sbjct: 809 cctggcatatgctgcattttct 830
>ref|XM_480915.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 191 cgacggatttgcagatggggcaccagttcttctgccggagcca 233 ||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 1030 cgacggatttgcagatggggcaccaattcttttgccgaagcca 988
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 191 cgacggatttgcagatggggcaccagttcttctgccggagcca 233 ||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 8577507 cgacggatttgcagatggggcaccaattcttttgccgaagcca 8577465
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 191 cgacggatttgcagatggggcaccagttcttctgccggagcca 233 ||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 89418 cgacggatttgcagatggggcaccaattcttttgccgaagcca 89376
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0031C02 Length = 138843 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 191 cgacggatttgcagatggggcaccagttcttctgccggagcca 233 ||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 107050 cgacggatttgcagatggggcaccaattcttttgccgaagcca 107008
>dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003N07, full insert sequence Length = 2128 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 300 gtactcctcctggcatatgctgcattt 326 ||||||||||||||||||||||||||| Sbjct: 1869 gtactcctcctggcatatgctgcattt 1843 Score = 40.1 bits (20), Expect = 5.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 198 tttgcagatggggcaccagttcttctgccggagcca 233 |||||| || || |||||||||||||||| |||||| Sbjct: 1971 tttgcatattggacaccagttcttctgcctgagcca 1936
>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7, complete sequence Length = 154034 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaata 103 ||||||||||||||||||||||| Sbjct: 76921 agaaaagaatagaaaaaagaata 76943
>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence Length = 163121 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaata 103 ||||||||||||||||||||||| Sbjct: 91869 agaaaagaatagaaaaaagaata 91891
>emb|AL807742.7| Human DNA sequence from clone RP11-274G22 on chromosome X, complete sequence Length = 172919 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaat 102 |||||||||||||||||||||| Sbjct: 23788 agaaaagaatagaaaaaagaat 23809
>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence Length = 179357 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 307 tcctggcatatgctgcattttc 328 |||||||||||||||||||||| Sbjct: 75165 tcctggcatatgctgcattttc 75186
>emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on chromosome 11, complete sequence Length = 205405 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 107 atcttgtgtctagacatttcag 128 |||||||||||||||||||||| Sbjct: 98271 atcttgtgtctagacatttcag 98250
>emb|AL161447.20| Human DNA sequence from clone RP11-379P1 on chromosome 9 Contains the 3' end of a novel gene (FLJ21613) similar to rat corneal wound healing related protein (includes FLJ22634), the GOLPH2 gene for golgi phosphoprotein 2 (GP73), a novel pseudogene and a CpG island, complete sequence Length = 160115 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaataca 105 ||||||||| ||||||||||||||| Sbjct: 116331 agaaaagaaaagaaaaaagaataca 116355
>emb|AL157364.15| Human DNA sequence from clone RP11-31H2 on chromosome 13 Contians the ATP12A gene for ATPase, H+/K+ transporting, nongastric, alpha polypeptide, a ribosomal protein L26 (RPL26) pseudogene and a CpG island, complete sequence Length = 91231 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aacaagcagaggctgctggtg 167 ||||||||||||||||||||| Sbjct: 2273 aacaagcagaggctgctggtg 2253
>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165378 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 agaaaagaatagaaaaaagaataca 105 ||||||||| ||||||||||||||| Sbjct: 108446 agaaaagaaaagaaaaaagaataca 108422
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 74 tcgttctagaaaagaatagaaaaaagaat 102 |||||||||||||||| || ||||||||| Sbjct: 1390052 tcgttctagaaaagaagaggaaaaagaat 1390024
>gb|AC117373.10| Homo sapiens 12 BAC RP11-174M13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175768 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaa 101 ||||||||||||||||||||| Sbjct: 41632 agaaaagaatagaaaaaagaa 41652
>gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166071 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaataca 105 ||||||||| ||||||||||||||| Sbjct: 164936 agaaaagaaaagaaaaaagaataca 164960
>dbj|AB112588.1| Satsuma dwarf virus CP gene for coat proteins, partial cds Length = 2160 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 ttgaaggcacaaacaaatgtt 73 ||||||||||||||||||||| Sbjct: 61 ttgaaggcacaaacaaatgtt 41
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 tcgttctagaaaagaatagaaaaaagaat 102 |||||||||||||||| || ||||||||| Sbjct: 2837406 tcgttctagaaaagaagaggaaaaagaat 2837434
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tctagaaaagaatagaaaaa 97 |||||||||||||||||||| Sbjct: 154341 tctagaaaagaatagaaaaa 154360
>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete sequence Length = 136832 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 aagtcttgaaggcacaaacaaatg 71 ||||| |||||||||||||||||| Sbjct: 64966 aagtcctgaaggcacaaacaaatg 64943
>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence Length = 193184 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 aagtcttgaaggcacaaacaaatg 71 ||||| |||||||||||||||||| Sbjct: 170438 aagtcctgaaggcacaaacaaatg 170415
>gb|AY299397.1| Pisum sativum clone Ps-cos14 Ogre retrotransposon, partial sequence Length = 32724 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 1422 agaaaagaatagaaaaaaga 1441
>emb|AL357912.10| Human DNA sequence from clone RP11-328N1 on chromosome 1 Contains the 3' end of a novel gene and the 5' end of the DNAH14 gene for dynein (axonemal) heavy polypeptide 14, complete sequence Length = 130057 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaagaatacagat 108 ||||||||| ||||||||||| |||||| Sbjct: 2188 agaaaagaaaagaaaaaagaaaacagat 2215
>emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 on chromosome 1q24 Contains the 3' end of a variant of the gene for expressed in hematopoietic cells (heart, liver) (HLL), complete sequence Length = 100496 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 tctagaaaagaatagaaaaaagaa 101 |||||||||||| ||||||||||| Sbjct: 78127 tctagaaaagaaaagaaaaaagaa 78104
>emb|BX537139.17| Zebrafish DNA sequence from clone DKEY-46K9 in linkage group 9, complete sequence Length = 243063 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 76238 agaaaagaatagaaaaaaga 76219
>emb|Y11066.1|DMKLUGEN D.melanogaster mRNA for klumpfuss gene Length = 3866 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaaaagaatagaaaaaagaa 101 |||||||||||||||||||| Sbjct: 3217 gaaaagaatagaaaaaagaa 3236
>gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qtel, complete sequence Length = 78545 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gacatttcaggagaatctgt 138 |||||||||||||||||||| Sbjct: 26683 gacatttcaggagaatctgt 26702
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 1593461 agaaaagaatagaaaaaaga 1593442
>emb|BX571871.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 13/17 Length = 349944 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 gaaaagaatagaaaaaagaataca 105 ||||||||||||||||| |||||| Sbjct: 94321 gaaaagaatagaaaaaacaataca 94344
>gb|AC090459.6| Homo sapiens chromosome 18, clone RP11-125E6, complete sequence Length = 146310 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaagaatagaaaaaagaata 103 |||||||||||||||||||| Sbjct: 143765 aaagaatagaaaaaagaata 143784
>gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, complete sequence Length = 189559 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaagaatagaaaaaagaata 103 |||||||||||||||||||| Sbjct: 117185 aaagaatagaaaaaagaata 117166
>gb|AC007268.5| Arabidopsis thaliana chromosome 2 clone T27D6 map PR1, complete sequence Length = 89685 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaaaaagaatacagatcttg 112 |||||||||||||||||||| Sbjct: 41220 aaaaaagaatacagatcttg 41239
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagaatagaaaaaagaatac 104 |||||||||||||||||||| Sbjct: 15376235 aagaatagaaaaaagaatac 15376254
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 198 tttgcagatggggcaccagttcttctgccggagcca 233 |||||| || || |||||||||||||||| |||||| Sbjct: 2795248 tttgcatattggacaccagttcttctgcctgagcca 2795213
>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence Length = 164588 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gacatttcaggagaatctgt 138 |||||||||||||||||||| Sbjct: 86169 gacatttcaggagaatctgt 86150
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagaatagaaaaaagaatac 104 |||||||||||||||||||| Sbjct: 93598 aagaatagaaaaaagaatac 93617
>gb|AC007251.4| Homo sapiens BAC clone RP11-373G23 from 2, complete sequence Length = 180964 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aagaatagaaaaaagaatacagat 108 ||||||||||||| |||||||||| Sbjct: 177591 aagaatagaaaaatgaatacagat 177614
>gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3p, complete sequence Length = 201414 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gtttacactaaacaagcaga 156 |||||||||||||||||||| Sbjct: 36047 gtttacactaaacaagcaga 36028
>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence Length = 180573 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 154912 agaaaagaatagaaaaaaga 154893
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 1632148 agaaaagaatagaaaaaaga 1632129
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 40.1 bits (20), Expect = 5.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 198 tttgcagatggggcaccagttcttctgccggagcca 233 |||||| || || |||||||||||||||| |||||| Sbjct: 63476 tttgcatattggacaccagttcttctgcctgagcca 63441
>emb|CR848035.7| Zebrafish DNA sequence from clone CH211-203J1 in linkage group 12, complete sequence Length = 143674 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 aagacaagaagtcttgaaggcaca 63 ||||||||||||||| |||||||| Sbjct: 77302 aagacaagaagtcttaaaggcaca 77279
>gb|AY104424.1| Zea mays PCO061312 mRNA sequence Length = 1386 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 ttgcagatggggcaccagttcttc 222 ||||||||||||||| |||||||| Sbjct: 1368 ttgcagatggggcacaagttcttc 1345
>emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2540L5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209483 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaagaatagaaaaaagaat 102 |||||||||||||||||||| Sbjct: 175547 aaaagaatagaaaaaagaat 175566
>dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB262G12, complete sequence Length = 126698 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gacatttcaggagaatctgt 138 |||||||||||||||||||| Sbjct: 106443 gacatttcaggagaatctgt 106424
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagaatagaaaaaagaatac 104 |||||||||||||||||||| Sbjct: 15384476 aagaatagaaaaaagaatac 15384495
>emb|AL929277.9| Mouse DNA sequence from clone RP23-153J22 on chromosome 4, complete sequence Length = 144310 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gaaggcacaaacaaatgttt 74 |||||||||||||||||||| Sbjct: 129598 gaaggcacaaacaaatgttt 129617
>gb|U41104.2| Caenorhabditis elegans cosmid T12C9, complete sequence Length = 31972 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaagaatagaaaaaagaata 103 |||||||||||||||||||| Sbjct: 15215 aaagaatagaaaaaagaata 15234
>dbj|AP001578.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1954F7 Length = 239057 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 74307 agaaaagaatagaaaaaaga 74288
>dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-513M1, complete sequences Length = 125561 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 agaaaagaatagaaaaaaga 100 |||||||||||||||||||| Sbjct: 40281 agaaaagaatagaaaaaaga 40300 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,855,090 Number of Sequences: 3902068 Number of extensions: 3855090 Number of successful extensions: 87510 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87151 Number of HSP's gapped (non-prelim): 359 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)