Clone Name | rbah61l12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 240 bits (121), Expect = 4e-60 Identities = 253/297 (85%) Strand = Plus / Plus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 20142960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 20143019 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 20143020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 20143079 Query: 398 caatccttggtgcgcgccgtgaagctaacctgcccggcgatctcctctagcttggagatg 457 || |||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||| Sbjct: 20143080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 20143139 Query: 458 atggtgttcacgggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517 ||| | ||| ||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 20143140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 20143199 Query: 518 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 574 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 20143200 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 20143256 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aataaattctctaaaatttc 173 |||||||||||||||||||| Sbjct: 28829815 aataaattctctaaaatttc 28829834
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 240 bits (121), Expect = 4e-60 Identities = 253/297 (85%) Strand = Plus / Plus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 8960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 9019 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 9020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 9079 Query: 398 caatccttggtgcgcgccgtgaagctaacctgcccggcgatctcctctagcttggagatg 457 || |||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||| Sbjct: 9080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 9139 Query: 458 atggtgttcacgggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517 ||| | ||| ||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 9140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 9199 Query: 518 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 574 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 9200 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 9256
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1068H08 Length = 152794 Score = 240 bits (121), Expect = 4e-60 Identities = 253/297 (85%) Strand = Plus / Plus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 131234 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 131293 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 131294 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 131353 Query: 398 caatccttggtgcgcgccgtgaagctaacctgcccggcgatctcctctagcttggagatg 457 || |||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||| Sbjct: 131354 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 131413 Query: 458 atggtgttcacgggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517 ||| | ||| ||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 131414 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 131473 Query: 518 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 574 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 131474 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 131530
>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full insert sequence Length = 1884 Score = 240 bits (121), Expect = 4e-60 Identities = 253/297 (85%) Strand = Plus / Minus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 1492 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 1433 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 1432 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 1373 Query: 398 caatccttggtgcgcgccgtgaagctaacctgcccggcgatctcctctagcttggagatg 457 || |||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||| Sbjct: 1372 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 1313 Query: 458 atggtgttcacgggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517 ||| | ||| ||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 1312 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 1253 Query: 518 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 574 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 1252 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 1196
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 186 bits (94), Expect = 5e-44 Identities = 223/266 (83%) Strand = Plus / Plus Query: 299 acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 358 ||||||||||||||||||||| |||||||| ||| | ||||| ||| ||||| ||||| Sbjct: 5627866 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 5627925 Query: 359 cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 418 ||||| ||||| || |||||||||| |||||| ||||| |||||||| |||||| || Sbjct: 5627926 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 5627985 Query: 419 aagctaacctgcccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctg 478 ||||| ||| |||||||||||||||||||||| ||||||| | ||| | ||||| | Sbjct: 5627986 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 5628045 Query: 479 gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 538 |||||||| |||| | |||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 5628046 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 5628105 Query: 539 gaggaggcgatgatgtcgaacgcgtt 564 || || || ||||||||||||||||| Sbjct: 5628106 gacgatgcaatgatgtcgaacgcgtt 5628131
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 186 bits (94), Expect = 5e-44 Identities = 223/266 (83%) Strand = Plus / Plus Query: 299 acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 358 ||||||||||||||||||||| |||||||| ||| | ||||| ||| ||||| ||||| Sbjct: 85073 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 85132 Query: 359 cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 418 ||||| ||||| || |||||||||| |||||| ||||| |||||||| |||||| || Sbjct: 85133 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 85192 Query: 419 aagctaacctgcccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctg 478 ||||| ||| |||||||||||||||||||||| ||||||| | ||| | ||||| | Sbjct: 85193 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 85252 Query: 479 gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 538 |||||||| |||| | |||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 85253 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 85312 Query: 539 gaggaggcgatgatgtcgaacgcgtt 564 || || || ||||||||||||||||| Sbjct: 85313 gacgatgcaatgatgtcgaacgcgtt 85338
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 127 bits (64), Expect = 4e-26 Identities = 214/264 (81%) Strand = Plus / Plus Query: 301 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 12496072 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 12496131 Query: 361 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 12496132 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 12496191 Query: 421 gctaacctgcccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctgga 480 ||| ||| |||||||||||||||||||||| ||||||| | ||| | ||||| ||| Sbjct: 12496192 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 12496251 Query: 481 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 12496252 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 12496311 Query: 541 ggaggcgatgatgtcgaacgcgtt 564 || || |||||||||||| |||| Sbjct: 12496312 cgatgcaatgatgtcgaacccgtt 12496335 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||| |||||||||||| Sbjct: 31932304 gatgatgtcgaaggcgttcatgctc 31932328 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 5799716 gatgatgtcgaacgcgttcaggctc 5799692 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 3429789 gatgatgtcgaacgcgttcaggctc 3429765
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 127 bits (64), Expect = 4e-26 Identities = 214/264 (81%) Strand = Plus / Plus Query: 301 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 7682 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 7741 Query: 361 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 7742 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 7801 Query: 421 gctaacctgcccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctgga 480 ||| ||| |||||||||||||||||||||| ||||||| | ||| | ||||| ||| Sbjct: 7802 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 7861 Query: 481 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 7862 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 7921 Query: 541 ggaggcgatgatgtcgaacgcgtt 564 || || |||||||||||| |||| Sbjct: 7922 cgatgcaatgatgtcgaacccgtt 7945
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 127 bits (64), Expect = 4e-26 Identities = 214/264 (81%) Strand = Plus / Plus Query: 301 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 81687 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 81746 Query: 361 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 81747 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 81806 Query: 421 gctaacctgcccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctgga 480 ||| ||| |||||||||||||||||||||| ||||||| | ||| | ||||| ||| Sbjct: 81807 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 81866 Query: 481 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 81867 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 81926 Query: 541 ggaggcgatgatgtcgaacgcgtt 564 || || |||||||||||| |||| Sbjct: 81927 cgatgcaatgatgtcgaacccgtt 81950
>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for class III peroxidase 13 precursor, exons 1-3 Length = 9315 Score = 127 bits (64), Expect = 4e-26 Identities = 214/264 (81%) Strand = Plus / Plus Query: 301 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 3571 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 3630 Query: 361 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 3631 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 3690 Query: 421 gctaacctgcccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctgga 480 ||| ||| |||||||||||||||||||||| ||||||| | ||| | ||||| ||| Sbjct: 3691 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 3750 Query: 481 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 3751 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 3810 Query: 541 ggaggcgatgatgtcgaacgcgtt 564 || || |||||||||||| |||| Sbjct: 3811 cgatgcaatgatgtcgaacccgtt 3834
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 103 bits (52), Expect = 6e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 431 ccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctggacacgaaacgc 490 |||||||||||||| ||||||| ||||||| | ||| |||||| ||||| ||| || Sbjct: 11596145 ccggcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgc 11596086 Query: 491 aactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatg 550 | | |||||||||||||||||||||| | ||||| |||||||| |||| || |||||| Sbjct: 11596085 atcctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatg 11596026 Query: 551 atgtcgaacgcgttcatgctcttg 574 |||||||||||||||| ||||||| Sbjct: 11596025 atgtcgaacgcgttcaggctcttg 11596002 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 11596265 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 11596206 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 11596205 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 11596150
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 103 bits (52), Expect = 6e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 431 ccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctggacacgaaacgc 490 |||||||||||||| ||||||| ||||||| | ||| |||||| ||||| ||| || Sbjct: 150279 ccggcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgc 150220 Query: 491 aactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatg 550 | | |||||||||||||||||||||| | ||||| |||||||| |||| || |||||| Sbjct: 150219 atcctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatg 150160 Query: 551 atgtcgaacgcgttcatgctcttg 574 |||||||||||||||| ||||||| Sbjct: 150159 atgtcgaacgcgttcaggctcttg 150136 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 150399 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 150340 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 150339 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 150284
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 103 bits (52), Expect = 6e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 431 ccggcgatctcctctagcttggagatgatggtgttcacgggcgcgctggacacgaaacgc 490 |||||||||||||| ||||||| ||||||| | ||| |||||| ||||| ||| || Sbjct: 56416 ccggcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgc 56357 Query: 491 aactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatg 550 | | |||||||||||||||||||||| | ||||| |||||||| |||| || |||||| Sbjct: 56356 atcctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatg 56297 Query: 551 atgtcgaacgcgttcatgctcttg 574 |||||||||||||||| ||||||| Sbjct: 56296 atgtcgaacgcgttcaggctcttg 56273 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 56536 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 56477 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 56476 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 56421
>ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA Length = 768 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 629 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 570 Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 569 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 514 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 431 ccggcgatctcctctagcttggagatgatg 460 |||||||||||||| ||||||| ||||||| Sbjct: 509 ccggcgatctcctccagcttggcgatgatg 480
>gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete sequence Length = 108232 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 ccctgctgcttttcaccccacaataa 158 |||| ||||||||||||||||||||| Sbjct: 39728 ccctactgcttttcaccccacaataa 39753
>ref|XM_550254.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 183 gatgatgtcgaacgcgttcaggctc 159
>ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||| |||||||||||| Sbjct: 1014 gatgatgtcgaaggcgttcatgctc 990
>ref|NM_186856.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1194 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 180 gatgatgtcgaacgcgttcaggctc 156
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 54991 gatgatgtcgaacgcgttcaagctc 55015
>dbj|AB097439.1| Oryza sativa (japonica cultivar-group) transposon AnacC1 DNA, complete sequence Length = 1868 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 808 gatgatgtcgaacgcgttcaggctc 832
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 8393355 gatgatgtcgaacgcgttcaggctc 8393379 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ggaggcgatgatgtcgaacg 560 |||||||||||||||||||| Sbjct: 19932780 ggaggcgatgatgtcgaacg 19932761
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 6616937 gatgatgtcgaacgcgttcaagctc 6616961
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||| |||||||||||| Sbjct: 118382 gatgatgtcgaaggcgttcatgctc 118406
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 98453 gatgatgtcgaacgcgttcaggctc 98477
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 3457 gatgatgtcgaacgcgttcaggctc 3433
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 124418 gatgatgtcgaacgcgttcaggctc 124394
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 108159 gatgatgtcgaacgcgttcaggctc 108135
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 24948 gatgatgtcgaacgcgttcaggctc 24972
>dbj|AK107068.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E08, full insert sequence Length = 1881 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 1072 gatgatgtcgaacgcgttcaagctc 1048
>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full insert sequence Length = 1628 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||| |||||||||||| Sbjct: 1140 gatgatgtcgaaggcgttcatgctc 1116
>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full insert sequence Length = 1690 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||| |||||||||||| Sbjct: 1132 gatgatgtcgaaggcgttcatgctc 1108
>gb|AY108681.1| Zea mays PCO122768 mRNA sequence Length = 986 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 355 gatgatgtcgaacgcgttcaggctc 331
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||||||||||| |||| Sbjct: 16549 gatgatgtcgaacgcgttcaggctc 16525
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttcatgctc 571 |||||||||||| |||||||||||| Sbjct: 29031 gatgatgtcgaaggcgttcatgctc 29055
>ref|NM_188346.1| Oryza sativa (japonica cultivar-group), Ozsa8097 predicted mRNA Length = 1434 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 gatgatgtcgaacgcgttca 566 |||||||||||||||||||| Sbjct: 1047 gatgatgtcgaacgcgttca 1028
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 cgcaactgctcgccgcgctc 507 |||||||||||||||||||| Sbjct: 776887 cgcaactgctcgccgcgctc 776868
>ref|XM_478426.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1822 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ggaggcgatgatgtcgaacg 560 |||||||||||||||||||| Sbjct: 597 ggaggcgatgatgtcgaacg 578
>gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, complete sequence Length = 195021 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaattctctaaaatttcaag 176 |||||||||||||||||||| Sbjct: 58625 aaattctctaaaatttcaag 58606
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cgcctcgaagctcacttggc 398 |||||||||||||||||||| Sbjct: 53644 cgcctcgaagctcacttggc 53663
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tcaggcaggccatccacgag 225 |||||||||||||||||||| Sbjct: 5067969 tcaggcaggccatccacgag 5067950
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 caataaattctctaaaattt 172 |||||||||||||||||||| Sbjct: 722771 caataaattctctaaaattt 722790
>ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG10958-PA (LOC660497), mRNA Length = 2451 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 gacgagctccggcgtgagctggaa 333 |||||||||| ||||||||||||| Sbjct: 862 gacgagctccagcgtgagctggaa 885
>emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 4/20 Length = 294050 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 cgtgaagctaacctgcccgg 434 |||||||||||||||||||| Sbjct: 181166 cgtgaagctaacctgcccgg 181185
>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence Length = 204309 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 aaattctctaaaatttcaag 176 |||||||||||||||||||| Sbjct: 21867 aaattctctaaaatttcaag 21886
>gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, complete sequence Length = 105081 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 taaattctctaaaatttcaa 175 |||||||||||||||||||| Sbjct: 4884 taaattctctaaaatttcaa 4865
>gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, complete sequence Length = 126189 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 taaattctctaaaatttcaa 175 |||||||||||||||||||| Sbjct: 44185 taaattctctaaaatttcaa 44204
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttca 566 |||||||||||||||||||| Sbjct: 25478861 gatgatgtcgaacgcgttca 25478880
>gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, complete sequence Length = 49580 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 aggccatcctcaggcaggccatcc 220 ||||||||||| |||||||||||| Sbjct: 33759 aggccatcctccggcaggccatcc 33736 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 aggccatcctcaggcaggccatcc 220 ||||||||||| |||||||||||| Sbjct: 33729 aggccatcctccggcaggccatcc 33706 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 aggccatcctcaggcaggccatcc 220 ||||||||||| |||||||||||| Sbjct: 33714 aggccatcctccggcaggccatcc 33691
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cgtgaagctaacctgcccgg 434 |||||||||||||||||||| Sbjct: 1922906 cgtgaagctaacctgcccgg 1922887
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 acgagctccggcgtgagctg 330 |||||||||||||||||||| Sbjct: 76693 acgagctccggcgtgagctg 76712
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aataaattctctaaaatttc 173 |||||||||||||||||||| Sbjct: 137590 aataaattctctaaaatttc 137609
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aataaattctctaaaatttc 173 |||||||||||||||||||| Sbjct: 4901 aataaattctctaaaatttc 4920
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ggaggcgatgatgtcgaacg 560 |||||||||||||||||||| Sbjct: 97430 ggaggcgatgatgtcgaacg 97411
>ref|XM_313685.2| Anopheles gambiae str. PEST ENSANGP00000013169 (ENSANGG00000010680), partial mRNA Length = 906 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 cgatgatgtcgaacgcgttc 565 |||||||||||||||||||| Sbjct: 895 cgatgatgtcgaacgcgttc 876
>dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A03, full insert sequence Length = 3296 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 actgctcgccgcgctcctca 511 |||||||||||||||||||| Sbjct: 1349 actgctcgccgcgctcctca 1330
>dbj|AK105659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G10, full insert sequence Length = 1822 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ggaggcgatgatgtcgaacg 560 |||||||||||||||||||| Sbjct: 597 ggaggcgatgatgtcgaacg 578
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cgtgaagctaacctgcccgg 434 |||||||||||||||||||| Sbjct: 2040911 cgtgaagctaacctgcccgg 2040892
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tttcttgcatacctggacca 308 |||||||||||||||||||| Sbjct: 2890611 tttcttgcatacctggacca 2890592
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttca 566 |||||||||||||||||||| Sbjct: 25407037 gatgatgtcgaacgcgttca 25407056
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttca 566 |||||||||||||||||||| Sbjct: 48243 gatgatgtcgaacgcgttca 48262
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 gatgatgtcgaacgcgttca 566 |||||||||||||||||||| Sbjct: 145669 gatgatgtcgaacgcgttca 145688
>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete sequence Length = 38266 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gctcccttgtgcccatttct 375 |||||||||||||||||||| Sbjct: 14048 gctcccttgtgcccatttct 14029 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,007,010 Number of Sequences: 3902068 Number of extensions: 4007010 Number of successful extensions: 79853 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79195 Number of HSP's gapped (non-prelim): 646 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)