>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 344 GAQMSLEWDHHGYFLQFSTATRTW--PRVQLIGEAS 445
           G +M L  D+H YF+  ST T TW  PR  ++   S
Sbjct: 247 GWEMRLSEDYHVYFVDHSTKTTTWSDPRDNVVASDS 282

>RGMA_CHICK (Q8JG54) Repulsive guidance molecule A precursor|
          Length = 432

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 273 TLMTATDILLLFKLLFPPVCTNCKALKC 356
           T +    IL +F  +FPPV + CK LKC
Sbjct: 8   TALGLFQILPVFLCIFPPVTSPCKILKC 35

>MKNK2_XENLA (Q6P431) MAP kinase-interacting serine/threonine-protein kinase 2|
           (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2)
           (Mnk2)
          Length = 467

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 427 LDSRPGPRRCRKLQEISMMIPL*GHLSALQLVQ 329
           ++ RPG  R R  +E+ M+    GH + L+L++
Sbjct: 114 IEKRPGHSRSRVFREVEMLYQCQGHSNVLELIE 146

>HLAE_HUMAN (P13747) HLA class I histocompatibility antigen, alpha chain E|
           precursor (MHC class I antigen E)
          Length = 358

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 273 WALGFFQLQMXXTGQQDK*CATQDAE 196
           WALGF+  ++  T QQD    TQD E
Sbjct: 225 WALGFYPAEITLTWQQDGEGHTQDTE 250

>HLAE_PANTR (Q95IT3) HLA class I histocompatibility antigen, alpha chain E|
           precursor (MHC class I antigen E)
          Length = 350

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 273 WALGFFQLQMXXTGQQDK*CATQDAE 196
           WALGF+  ++  T QQD    TQD E
Sbjct: 225 WALGFYPAEITLTWQQDGEGHTQDTE 250

>MKNK2_XENTR (Q66I46) MAP kinase-interacting serine/threonine-protein kinase 2|
           (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2)
           (Mnk2)
          Length = 466

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 427 LDSRPGPRRCRKLQEISMMIPL*GHLSALQLVQ 329
           ++ RPG  R R  +E+ M+    GH + L+L++
Sbjct: 114 IEKRPGHSRSRVFREVEMLYQCQGHSNVLELIE 146

>TYDP_CAEEL (Q9TXV7) Probable tyrosyl-DNA phosphodiesterase (EC 3.1.4.-)|
           (Tyr-DNA phosphodiesterase)
          Length = 451

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 462 SSINHSEASPINWTRGQVLVAVENCKKYP 376
           SSI    ++PINW RGQ L ++E     P
Sbjct: 265 SSIGSLGSAPINWFRGQFLQSLEGANPSP 293

>RF1_NITEU (Q82TH4) Peptide chain release factor 1 (RF-1)|
          Length = 359

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 392 TARNIHDDPTLRTFERLTISADRRK 318
           TAR +  DP  R F    I ADRRK
Sbjct: 64  TAREMSSDPQFRDFAEAEIEADRRK 88

>LPXK_CHLAB (Q5L6Q2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 367

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 183 RRGLIESWHE*SSTVISM-SVLLNG*RKRFTPFWRAWIVSAALFGCA 46
           R+ L  + H  SSTVIS+ +++L G  K  T  W A ++ A  + CA
Sbjct: 47  RKVLSSAPHRVSSTVISVGNIVLGGSGKTPTVLWLAEVLKARGYSCA 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,539,896
Number of Sequences: 219361
Number of extensions: 1257408
Number of successful extensions: 2665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)