>PFD4_AVEFA (Q9M4C4) Probable prefoldin subunit 4 (VIP3 protein)|
          Length = 126

 Score =  105 bits (262), Expect = 8e-23
 Identities = 57/78 (73%), Positives = 59/78 (75%)
 Frame = -2

Query: 521 AGNELILSDEXVVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILAQMAE 342
           AGNELIL DE VVRFQIGEVFAHMP+DDVE RLEQM               ESILAQMAE
Sbjct: 49  AGNELILCDEDVVRFQIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAE 108

Query: 341 LKKILYGKFGEAINLEED 288
           LKKILYGKF +AINLEED
Sbjct: 109 LKKILYGKFKDAINLEED 126

>PFD4_ARATH (Q9M4B5) Probable prefoldin subunit 4 (ABI3-interacting protein 3)|
          Length = 128

 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 47/78 (60%), Positives = 57/78 (73%)
 Frame = -2

Query: 521 AGNELILSDEXVVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILAQMAE 342
           AGNELIL+DE +VRFQIGEVFAH+P DDVET++E+M               ESI+ QMA 
Sbjct: 51  AGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAA 110

Query: 341 LKKILYGKFGEAINLEED 288
           LKK+LY KF ++INLEED
Sbjct: 111 LKKVLYAKFKDSINLEED 128

>PFD4_CAEEL (Q17435) Probable prefoldin subunit 4|
          Length = 126

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -2

Query: 521 AGNELILSDE---XVVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILAQ 351
           A +E++L D+     +  +IG  F H   D +   LE                 ++I A 
Sbjct: 45  ASDEILLLDDEDSASIPCRIGSCFVHFNGDSLNEHLEGKKTTAEKVLSEKTSELDAISAD 104

Query: 350 MAELKKILYGKFGEAINLEED 288
           M ++KK+LY KFG+ INL+ +
Sbjct: 105 MEQIKKVLYAKFGDQINLDAE 125

>PFD4_HUMAN (Q9NQP4) Prefoldin subunit 4 (Protein C-1)|
          Length = 134

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -2

Query: 521 AGNELILSDEX--VVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILAQM 348
           A ++++L+D+   ++ +QIG+VF     ++ +  LE+                ESI   +
Sbjct: 53  ACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVL 112

Query: 347 AELKKILYGKFGEAINLEED 288
           A+LK  LY KFG  INLE D
Sbjct: 113 ADLKVQLYAKFGSNINLEAD 132

>PFD4_YEAST (P53900) Prefoldin subunit 4|
          Length = 129

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 25/73 (34%), Positives = 37/73 (50%)
 Frame = -2

Query: 512 ELILSDEXVVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILAQMAELKK 333
           ELI  DE V ++++G++F  M    V  +LE+                  I +++  LK 
Sbjct: 57  ELIDEDEPV-QYKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKA 115

Query: 332 ILYGKFGEAINLE 294
           ILY KFG+ INLE
Sbjct: 116 ILYAKFGDNINLE 128

>PFD4_DROME (Q9VRL3) Probable prefoldin subunit 4|
          Length = 138

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = -2

Query: 512 ELILSDEXVVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILAQMAELKK 333
           EL   DE +  F +GEVF    ++  +  L++                + I A+M ELK 
Sbjct: 64  ELFDEDEDIP-FLVGEVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKA 122

Query: 332 ILYGKFGEAINLEED 288
            LY +FG  I+LE +
Sbjct: 123 HLYQRFGSNISLEAE 137

>NUKC_WHEAT (P26304) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K)
          Length = 245

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +3

Query: 87  VPI*VYSPQASAGQPAPIYSPTEINHANA*WGTIITRNNVARRTKHLNKNRCHTTRHLKR 266
           +P+ VY P       A I + T++          I+R  V  RT   NKNRC TT H K 
Sbjct: 150 IPVDVYLPGCPPKPEAVIDALTKLRKK-------ISREIVEDRTLSQNKNRCFTTSH-KL 201

Query: 267 QLRFST 284
            +R ST
Sbjct: 202 YVRRST 207

>CCA_METMP (Q6LYP1) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 444

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 231 KNRCHTTRHLKRQLRFSTSIFLQVDGLSKFPVEDLLQFGHLGKD 362
           K+ C T    +    FS  I  ++  +SK+PV D++Q G   +D
Sbjct: 18  KDICPTDSEKEELKIFSDKIISKIKDISKYPVLDIIQVGSTARD 61

>PFD4_SCHPO (Q9UTD4) Probable prefoldin subunit 4|
          Length = 123

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -2

Query: 521 AGNELILSDEX----VVRFQIGEVFAHMPVDDVETRLEQMXXXXXXXXXXXXXXXESILA 354
           A NE  L DE     +   ++G+ F  + +  +  +LEQ                E    
Sbjct: 44  AKNECELLDEDDGDDIPALKVGDAFFQVSLPVLLDQLEQSEESLEKQVDVLRSSMEKDET 103

Query: 353 QMAELKKILYGKFGEAINLE 294
           ++ ELK +LY KF + INL+
Sbjct: 104 RIQELKSMLYSKFHDQINLD 123

>IF4F2_YEAST (P39936) Eukaryotic initiation factor 4F subunit p130 (eIF4F p130)|
           (eIF-4F p130) (mRNA cap-binding protein complex subunit
           p130)
          Length = 914

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 188 HHEKQCS---EKNKAPEQEQVSYDPTPKKAAPVLDIN 289
           H EK+ S   EKN   EQ+  S  P  K+A PVL  N
Sbjct: 166 HEEKKASKGEEKNDGVEQKSKSGTPFEKEATPVLPAN 202

>STAR9_HUMAN (Q9P2P6) StAR-related lipid transfer protein 9 (StARD9) (START|
            domain-containing protein 9) (Fragment)
          Length = 1820

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 348  GRTEEDPLREIWRGHQPGGRLMSRTGAAFLGVGSYDTCSCS 226
            G T     R++W G + GG    R  +A+    S  +C CS
Sbjct: 1549 GHTNLPDSRDVWIGDERGGHSAVRKNSAYSHRASLGSCCCS 1589

>NUKC_ORYSA (P12159) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K)
          Length = 246

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +3

Query: 87  VPI*VYSPQASAGQPAPIYSPTEINHANA*WGTIITRNNVARRTKHLNKNRCHTTRHLKR 266
           +P+ VY P       A I + T++          I+R  V  RT    KNRC TT H K 
Sbjct: 151 IPVDVYLPGCPPKPEAVIDALTKLRKK-------ISREIVEDRTLSQKKNRCFTTSH-KL 202

Query: 267 QLRFSTS 287
            +R ST+
Sbjct: 203 YVRRSTN 209

>NUKC_ORYNI (Q6ENH0) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K)
          Length = 246

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +3

Query: 87  VPI*VYSPQASAGQPAPIYSPTEINHANA*WGTIITRNNVARRTKHLNKNRCHTTRHLKR 266
           +P+ VY P       A I + T++          I+R  V  RT    KNRC TT H K 
Sbjct: 151 IPVDVYLPGCPPKPEAVIDALTKLRKK-------ISREIVEDRTLSQKKNRCFTTSH-KL 202

Query: 267 QLRFSTS 287
            +R ST+
Sbjct: 203 YVRRSTN 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,656,067
Number of Sequences: 219361
Number of extensions: 1388997
Number of successful extensions: 4064
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4061
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)