ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAVS_HUMAN (Q7Z434) Mitochondrial antiviral signaling protein (I... 30 1.7
2ISPH_BACSU (P54473) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 30 1.7
3SAT_ARCFU (O28606) Sulfate adenylyltransferase (EC 2.7.7.4) (Sul... 29 3.8
4NC6IP_HUMAN (Q96RS0) Putative RNA methyltransferase NCOA6IP (EC ... 29 3.8
5ZN179_RAT (O70418) Zinc finger protein 179 (Brain finger protein) 29 5.0
6PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate p... 29 5.0
7NCAP_SENDO (O57286) Nucleoprotein (Protein N) (Nucleocapsid prot... 29 5.0
8PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 a... 28 6.6
9PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 a... 28 6.6
10PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 a... 28 6.6
11PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 a... 28 6.6
12PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 a... 28 6.6
13PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 a... 28 6.6
14PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 a... 28 6.6
15PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 a... 28 6.6
16PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Majo... 28 6.6
17YAGA_SCHPO (Q09873) Hypothetical protein C12G12.10 in chromosome I 28 8.6
18ERG2_MAGGR (P33281) C-8 sterol isomerase (Delta-8--delta-7 stero... 28 8.6
19PAC_STRMU (P11657) Major cell-surface adhesin PAc precursor (Ant... 28 8.6
20ISPH_BACLD (Q65H97) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 28 8.6

>MAVS_HUMAN (Q7Z434) Mitochondrial antiviral signaling protein (Interferon-beta|
           promoter stimulator protein 1) (IPS-1) (Virus-induced
           signaling adapter) (CARD adapter inducing
           interferon-beta) (Cardif) (Putative
           NF-kappa-B-activating protein 031N)
          Length = 540

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 289 HXPQETWYESYPHFGFHHCFENSVQLLSVSRQPPKNFKLGKRVDA 155
           H P+E  Y+S   FG H     S+QLL  +  PP +   G R  A
Sbjct: 453 HGPEENEYKSEGTFGIHVAENPSIQLLEGNPGPPADPDGGPRPQA 497



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>ISPH_BACSU (P54473) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 314

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 298 WDTHXPQETWYESYPHFGFHH--CFENSVQLLSVSRQPPK 185
           WD H   E   E YPH  +H   C    V+  +VS Q  K
Sbjct: 175 WDVHDIMELVKEKYPHVEYHQEICLATQVRQEAVSEQAKK 214



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>SAT_ARCFU (O28606) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate|
           adenylate transferase) (SAT) (ATP-sulfurylase)
          Length = 456

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 331 HKYGRSSS--GEHWDTHXPQETWYESYPHFGF 242
           H +GR  +  GE++D +  Q  W +  P FGF
Sbjct: 316 HMFGRDHAAVGEYYDMYATQILWSQGIPSFGF 347



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>NC6IP_HUMAN (Q96RS0) Putative RNA methyltransferase NCOA6IP (EC 2.1.1.-)|
           (Nuclear receptor coactivator 6-interacting protein)
           (PRIP-interacting protein with methyltransferase motif)
           (PIPMT) (PIMT) (CLL-associated antigen KW-2)
           (Hepatocellular carcinoma-a
          Length = 853

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 382 DRWNRTWGEGHNG---SGWVHKY-GRSSSGEHWDTHXPQETWYESYPHFGFHH 236
           ++W + W E   G     W  K+ G++ S E W+    +E W + Y    +++
Sbjct: 196 EKWEKYWNEYGGGLLWQSWQEKHPGQALSSEPWNFPDTKEEWEQHYSQLYWYY 248



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>ZN179_RAT (O70418) Zinc finger protein 179 (Brain finger protein)|
          Length = 631

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = -2

Query: 365 LGRGPQRLRLGAQVRQEQ*RRALGHSXAAGDVVRELPAFRLPPLLRELSATLVRVQAASK 186
           + RG +RL  G Q+ QE           +G + +  P+F  P  +      L +V+AA K
Sbjct: 414 MARGDRRLLTGQQLAQEI-------KNLSGWMGKSGPSFSSPDEMAAQLHDLRKVEAAKK 466

Query: 185 EFQAWEKSRCFLIRNISAA 129
           EF+ + + +    + I +A
Sbjct: 467 EFEEYVRQQDIATKRIFSA 485



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>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan|
           core protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 239 PLLRELSATLVRVQAASKEFQAWEKSRCFLIRNISAAFPKK 117
           P +  LS+T +++  A +EFQ  + SR FL+ +   A PK+
Sbjct: 561 PGVPPLSSTQLQIDPALQEFQLVDLSRRFLVHDAFWALPKQ 601



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>NCAP_SENDO (O57286) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP|
           protein)
          Length = 524

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 400 WEGKYGDRWNRTWGEGH 350
           W G  GDRW R+ G GH
Sbjct: 441 WGGDSGDRWARSMGSGH 457



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>PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Major|
           scrapie-associated fibril protein 2)
          Length = 256

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -3

Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272
           W   +G  W +     WG+ H G GW    G+  S   W+     +T
Sbjct: 68  WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110



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>YAGA_SCHPO (Q09873) Hypothetical protein C12G12.10 in chromosome I|
          Length = 420

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 397 EGKYGDRWNRTWGEGHNGSGWVHKYGR 317
           +GKY  R + +W +  NG+GWV  YGR
Sbjct: 388 DGKYLCR-DGSWVKAMNGTGWVLPYGR 413



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>ERG2_MAGGR (P33281) C-8 sterol isomerase (Delta-8--delta-7 sterol isomerase)|
          Length = 221

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -3

Query: 358 EGHNGSGWVHKYGRSSSGEHWDTHXPQETWYESYPHFGFHHCFENSVQ 215
           EGH G      Y    +GE W  + P E   E YP    HH    +V+
Sbjct: 116 EGHTGRHTADDYFNILTGEQW-AYVPGEYEPEVYPAGSVHHLRRGTVK 162



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>PAC_STRMU (P11657) Major cell-surface adhesin PAc precursor (Antigen I/II)|
          Length = 1565

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 358 EGHNGSGWVHKYGRSSSGEHWDTHXPQETWY 266
           +G  GS W   Y  S +G  WD+     +WY
Sbjct: 739 QGEGGSRWT-MYKNSQAGSGWDSSDAPNSWY 768



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>ISPH_BACLD (Q65H97) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 314

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -3

Query: 298 WDTHXPQETWYESYPHFGFHH--CFENSVQLLSVSRQPPK 185
           WD H   E   E YP   FH   C    V+  +VS Q  K
Sbjct: 175 WDVHDIMEKVKEKYPDVEFHQEICLATQVRQEAVSEQAKK 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,920,857
Number of Sequences: 219361
Number of extensions: 1180448
Number of successful extensions: 3465
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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