ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62a09 |
|---|---|
| Clone Library Name | barley_pub |
>MAVS_HUMAN (Q7Z434) Mitochondrial antiviral signaling protein (Interferon-beta| promoter stimulator protein 1) (IPS-1) (Virus-induced signaling adapter) (CARD adapter inducing interferon-beta) (Cardif) (Putative NF-kappa-B-activating protein 031N) Length = 540 Score = 30.4 bits (67), Expect = 1.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 289 HXPQETWYESYPHFGFHHCFENSVQLLSVSRQPPKNFKLGKRVDA 155 H P+E Y+S FG H S+QLL + PP + G R A Sbjct: 453 HGPEENEYKSEGTFGIHVAENPSIQLLEGNPGPPADPDGGPRPQA 497
>ISPH_BACSU (P54473) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 314 Score = 30.4 bits (67), Expect = 1.7 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Frame = -3 Query: 298 WDTHXPQETWYESYPHFGFHH--CFENSVQLLSVSRQPPK 185 WD H E E YPH +H C V+ +VS Q K Sbjct: 175 WDVHDIMELVKEKYPHVEYHQEICLATQVRQEAVSEQAKK 214
>SAT_ARCFU (O28606) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 456 Score = 29.3 bits (64), Expect = 3.8 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = -3 Query: 331 HKYGRSSS--GEHWDTHXPQETWYESYPHFGF 242 H +GR + GE++D + Q W + P FGF Sbjct: 316 HMFGRDHAAVGEYYDMYATQILWSQGIPSFGF 347
>NC6IP_HUMAN (Q96RS0) Putative RNA methyltransferase NCOA6IP (EC 2.1.1.-)| (Nuclear receptor coactivator 6-interacting protein) (PRIP-interacting protein with methyltransferase motif) (PIPMT) (PIMT) (CLL-associated antigen KW-2) (Hepatocellular carcinoma-a Length = 853 Score = 29.3 bits (64), Expect = 3.8 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%) Frame = -3 Query: 382 DRWNRTWGEGHNG---SGWVHKY-GRSSSGEHWDTHXPQETWYESYPHFGFHH 236 ++W + W E G W K+ G++ S E W+ +E W + Y +++ Sbjct: 196 EKWEKYWNEYGGGLLWQSWQEKHPGQALSSEPWNFPDTKEEWEQHYSQLYWYY 248
>ZN179_RAT (O70418) Zinc finger protein 179 (Brain finger protein)| Length = 631 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/79 (26%), Positives = 37/79 (46%) Frame = -2 Query: 365 LGRGPQRLRLGAQVRQEQ*RRALGHSXAAGDVVRELPAFRLPPLLRELSATLVRVQAASK 186 + RG +RL G Q+ QE +G + + P+F P + L +V+AA K Sbjct: 414 MARGDRRLLTGQQLAQEI-------KNLSGWMGKSGPSFSSPDEMAAQLHDLRKVEAAKK 466 Query: 185 EFQAWEKSRCFLIRNISAA 129 EF+ + + + + I +A Sbjct: 467 EFEEYVRQQDIATKRIFSA 485
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan| core protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 28.9 bits (63), Expect = 5.0 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = -2 Query: 239 PLLRELSATLVRVQAASKEFQAWEKSRCFLIRNISAAFPKK 117 P + LS+T +++ A +EFQ + SR FL+ + A PK+ Sbjct: 561 PGVPPLSSTQLQIDPALQEFQLVDLSRRFLVHDAFWALPKQ 601
>NCAP_SENDO (O57286) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 524 Score = 28.9 bits (63), Expect = 5.0 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 400 WEGKYGDRWNRTWGEGH 350 W G GDRW R+ G GH Sbjct: 441 WGGDSGDRWARSMGSGH 457
>PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Major| scrapie-associated fibril protein 2) Length = 256 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Frame = -3 Query: 400 WEGKYGDRWNRT----WGEGHNGSGWVHKYGRSSSGEHWDTHXPQET 272 W +G W + WG+ H G GW G+ S W+ +T Sbjct: 68 WGQPHGGGWGQPHGGGWGQPHGGGGW----GQGGSHSQWNKPSKPKT 110
>YAGA_SCHPO (Q09873) Hypothetical protein C12G12.10 in chromosome I| Length = 420 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 397 EGKYGDRWNRTWGEGHNGSGWVHKYGR 317 +GKY R + +W + NG+GWV YGR Sbjct: 388 DGKYLCR-DGSWVKAMNGTGWVLPYGR 413
>ERG2_MAGGR (P33281) C-8 sterol isomerase (Delta-8--delta-7 sterol isomerase)| Length = 221 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -3 Query: 358 EGHNGSGWVHKYGRSSSGEHWDTHXPQETWYESYPHFGFHHCFENSVQ 215 EGH G Y +GE W + P E E YP HH +V+ Sbjct: 116 EGHTGRHTADDYFNILTGEQW-AYVPGEYEPEVYPAGSVHHLRRGTVK 162
>PAC_STRMU (P11657) Major cell-surface adhesin PAc precursor (Antigen I/II)| Length = 1565 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 Query: 358 EGHNGSGWVHKYGRSSSGEHWDTHXPQETWY 266 +G GS W Y S +G WD+ +WY Sbjct: 739 QGEGGSRWT-MYKNSQAGSGWDSSDAPNSWY 768
>ISPH_BACLD (Q65H97) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 314 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Frame = -3 Query: 298 WDTHXPQETWYESYPHFGFHH--CFENSVQLLSVSRQPPK 185 WD H E E YP FH C V+ +VS Q K Sbjct: 175 WDVHDIMEKVKEKYPDVEFHQEICLATQVRQEAVSEQAKK 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,920,857 Number of Sequences: 219361 Number of extensions: 1180448 Number of successful extensions: 3465 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3449 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
