Clone Name | rbah62a08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 83.8 bits (42), Expect = 7e-13 Identities = 119/145 (82%) Strand = Plus / Minus Query: 515 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574 |||| |||||| ||||||||||||| | |||||||| |||||||| || ||||||| || Sbjct: 817 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 758 Query: 575 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634 | ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| |||| Sbjct: 757 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 698 Query: 635 acctncgccttctgtaactgtatgg 659 |||| |||||||||| |||||| Sbjct: 697 acctctctcttctgtaacggtatgg 673 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416 |||||||||||||||||| ||||| ||| | |||||||||||||| | ||||| || || Sbjct: 969 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 910 Query: 417 agaacgcctctt 428 |||| ||||||| Sbjct: 909 agaatgcctctt 898
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 7e-13 Identities = 119/145 (82%) Strand = Plus / Plus Query: 515 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574 |||| |||||| ||||||||||||| | |||||||| |||||||| || ||||||| || Sbjct: 8740278 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8740337 Query: 575 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634 | ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| |||| Sbjct: 8740338 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8740397 Query: 635 acctncgccttctgtaactgtatgg 659 |||| |||||||||| |||||| Sbjct: 8740398 acctctctcttctgtaacggtatgg 8740422 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416 |||||||||||||||||| ||||| ||| | |||||||||||||| | ||||| || || Sbjct: 8740126 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8740185 Query: 417 agaacgcctctt 428 |||| ||||||| Sbjct: 8740186 agaatgcctctt 8740197
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02, complete sequence Length = 115270 Score = 83.8 bits (42), Expect = 7e-13 Identities = 119/145 (82%) Strand = Plus / Plus Query: 515 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574 |||| |||||| ||||||||||||| | |||||||| |||||||| || ||||||| || Sbjct: 83929 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 83988 Query: 575 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634 | ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| |||| Sbjct: 83989 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 84048 Query: 635 acctncgccttctgtaactgtatgg 659 |||| |||||||||| |||||| Sbjct: 84049 acctctctcttctgtaacggtatgg 84073 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416 |||||||||||||||||| ||||| ||| | |||||||||||||| | ||||| || || Sbjct: 83777 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 83836 Query: 417 agaacgcctctt 428 |||| ||||||| Sbjct: 83837 agaatgcctctt 83848
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 7e-13 Identities = 119/145 (82%) Strand = Plus / Plus Query: 515 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574 |||| |||||| ||||||||||||| | |||||||| |||||||| || ||||||| || Sbjct: 8738113 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8738172 Query: 575 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634 | ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| |||| Sbjct: 8738173 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8738232 Query: 635 acctncgccttctgtaactgtatgg 659 |||| |||||||||| |||||| Sbjct: 8738233 acctctctcttctgtaacggtatgg 8738257 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416 |||||||||||||||||| ||||| ||| | |||||||||||||| | ||||| || || Sbjct: 8737961 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8738020 Query: 417 agaacgcctctt 428 |||| ||||||| Sbjct: 8738021 agaatgcctctt 8738032
>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full insert sequence Length = 1438 Score = 83.8 bits (42), Expect = 7e-13 Identities = 119/145 (82%) Strand = Plus / Minus Query: 515 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574 |||| |||||| ||||||||||||| | |||||||| |||||||| || ||||||| || Sbjct: 1076 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 1017 Query: 575 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634 | ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| |||| Sbjct: 1016 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 957 Query: 635 acctncgccttctgtaactgtatgg 659 |||| |||||||||| |||||| Sbjct: 956 acctctctcttctgtaacggtatgg 932 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416 |||||||||||||||||| ||||| ||| | |||||||||||||| | ||||| || || Sbjct: 1228 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 1169 Query: 417 agaacgcctctt 428 |||| ||||||| Sbjct: 1168 agaatgcctctt 1157
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 439 ggtgacctgctgcgcgatgccttgct 464 ||||||||| |||||||||||||||| Sbjct: 352154 ggtgacctggtgcgcgatgccttgct 352179
>gb|AY105790.1| Zea mays PCO079761 mRNA sequence Length = 1402 Score = 44.1 bits (22), Expect = 0.58 Identities = 37/42 (88%) Strand = Plus / Minus Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggct 398 ||||||||||||||| || ||||| ||| | ||||||||||| Sbjct: 1260 tgagcgctccctggacacagacctggagtacgaactgcggct 1219
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 atcttataaacaaaggaaaatt 46 |||||||||||||||||||||| Sbjct: 2629074 atcttataaacaaaggaaaatt 2629053
>ref|XM_705696.1| Candida albicans SC5314 hypothetical protein (CaO19.3758), mRNA Length = 1428 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 aagatgttaacgatgacgaaataca 260 |||||||||||||||| |||||||| Sbjct: 1166 aagatgttaacgatgaagaaataca 1190
>ref|XM_705683.1| Candida albicans SC5314 hypothetical protein (CaO19.11242), mRNA Length = 1428 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 aagatgttaacgatgacgaaataca 260 |||||||||||||||| |||||||| Sbjct: 1166 aagatgttaacgatgaagaaataca 1190
>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2 Contains a ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1) pseudogene (LOC286472) and a CpG island, complete sequence Length = 137111 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 cagactgcaatttaagatgtt 243 ||||||||||||||||||||| Sbjct: 99923 cagactgcaatttaagatgtt 99903
>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence Length = 162258 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 gaacagctccttgattcttct 507 ||||||||||||||||||||| Sbjct: 102961 gaacagctccttgattcttct 102941
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 caggtgcttgatgaggttgag 360 ||||||||||||||||||||| Sbjct: 1782657 caggtgcttgatgaggttgag 1782677
>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence Length = 207234 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcatctgaaacaaagaaatga 103 ||||||||||||||||||||| Sbjct: 196725 tcatctgaaacaaagaaatga 196745
>gb|AC166112.2| Mus musculus BAC clone RP23-63L7 from chromosome 9, complete sequence Length = 243289 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tgaaacaaagaaatgacctc 107 |||||||||||||||||||| Sbjct: 158005 tgaaacaaagaaatgacctc 158024
>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0005H02, complete sequence Length = 144882 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tttctgcatttttctcctat 212 |||||||||||||||||||| Sbjct: 13390 tttctgcatttttctcctat 13371
>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F07, complete sequence Length = 175703 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tttctgcatttttctcctat 212 |||||||||||||||||||| Sbjct: 157289 tttctgcatttttctcctat 157270
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 attttctgcatttttctcct 210 |||||||||||||||||||| Sbjct: 5561837 attttctgcatttttctcct 5561818
>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete sequence Length = 237281 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 taactccgtcttctgttcct 581 |||||||||||||||||||| Sbjct: 94059 taactccgtcttctgttcct 94040
>gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, complete sequence Length = 234973 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 taggcaatctgtaggaaattttct 197 ||||||||||||| |||||||||| Sbjct: 176074 taggcaatctgtaagaaattttct 176051
>gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, complete sequence Length = 272413 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggaaattttctgcatttttc 206 |||||||||||||||||||| Sbjct: 137912 ggaaattttctgcatttttc 137893
>ref|XM_674112.1| Plasmodium berghei strain ANKA hypothetical protein (PB000589.00.0) partial mRNA Length = 3570 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aaattttctgcatttttctc 208 |||||||||||||||||||| Sbjct: 2210 aaattttctgcatttttctc 2191
>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds Length = 3723 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 tttcagcatatcctttctgc 483 |||||||||||||||||||| Sbjct: 3500 tttcagcatatcctttctgc 3519
>emb|AL158159.14| Human DNA sequence from clone RP11-498N2 on chromosome 9 Contains the 3' end of the CHAC gene for chorea acanthocytosis, the 3' end of the GNA14 gene for guanine nucleotide binding protein (G protein) alpha 14 and the 5' end of a novel gene, complete sequence Length = 167006 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gtttgagttagagatcttat 31 |||||||||||||||||||| Sbjct: 59589 gtttgagttagagatcttat 59608
>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds Length = 3894 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 taactccgtcttctgttcct 581 |||||||||||||||||||| Sbjct: 1627 taactccgtcttctgttcct 1608
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 aacatccaaagtcatcaaggcact 328 |||||| ||||||||||||||||| Sbjct: 55797 aacatcaaaagtcatcaaggcact 55774
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aatttctgcgttttttccgt 142 |||||||||||||||||||| Sbjct: 67025 aatttctgcgttttttccgt 67044
>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593 IMAGE:30059745), complete cds Length = 3683 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 taactccgtcttctgttcct 581 |||||||||||||||||||| Sbjct: 3226 taactccgtcttctgttcct 3207
>gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, complete sequence Length = 199051 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 attttctgcatttttctcct 210 |||||||||||||||||||| Sbjct: 127187 attttctgcatttttctcct 127206
>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence Length = 173707 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gaaatacagctgcttcacta 272 |||||||||||||||||||| Sbjct: 84899 gaaatacagctgcttcacta 84918
>gb|AF342813.1|AF342813 Didelphis virginiana mannose-6-phosphate/insulin-like growth factor II receptor (m6p/igf2r) mRNA, complete cds Length = 8916 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 atccttgtggaataggcaat 181 |||||||||||||||||||| Sbjct: 2708 atccttgtggaataggcaat 2689
>gb|AC010587.6| Homo sapiens chromosome 5 clone CTC-394G3, complete sequence Length = 94536 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gccaatatttatgaaaattt 127 |||||||||||||||||||| Sbjct: 31859 gccaatatttatgaaaattt 31878
>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030013K10 product:hypothetical protein, full insert sequence Length = 2172 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 taactccgtcttctgttcct 581 |||||||||||||||||||| Sbjct: 23 taactccgtcttctgttcct 4
>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833426I20 product:lysyl oxidase-like 4, full insert sequence Length = 1427 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 taactccgtcttctgttcct 581 |||||||||||||||||||| Sbjct: 987 taactccgtcttctgttcct 968
>emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in linkage group 23, complete sequence Length = 182686 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 taggaaattttctgcatttt 204 |||||||||||||||||||| Sbjct: 7829 taggaaattttctgcatttt 7810
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aatttctgcgttttttccgt 142 |||||||||||||||||||| Sbjct: 35442222 aatttctgcgttttttccgt 35442241 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 aacatccaaagtcatcaaggcact 328 |||||| ||||||||||||||||| Sbjct: 18963873 aacatcaaaagtcatcaaggcact 18963850
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tttctgcatttttctcctat 212 |||||||||||||||||||| Sbjct: 19438738 tttctgcatttttctcctat 19438719
>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA Length = 3683 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 taactccgtcttctgttcct 581 |||||||||||||||||||| Sbjct: 3226 taactccgtcttctgttcct 3207
>gb|AC006927.27| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114701 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ccttgtggaataggcaatct 183 |||||||||||||||||||| Sbjct: 65197 ccttgtggaataggcaatct 65178
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaaatgaggtttgagttaga 23 |||||||||||||||||||| Sbjct: 101939 aaaatgaggtttgagttaga 101958
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 attttctgcatttttctcct 210 |||||||||||||||||||| Sbjct: 959560 attttctgcatttttctcct 959541
>gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9, complete sequence Length = 106320 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gaaatacagctgcttcacta 272 |||||||||||||||||||| Sbjct: 51495 gaaatacagctgcttcacta 51514
>gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J24, complete sequence Length = 94995 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gaaatacagctgcttcacta 272 |||||||||||||||||||| Sbjct: 27107 gaaatacagctgcttcacta 27088
>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20, complete sequence Length = 73842 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 taggaaattttctgcatttt 204 |||||||||||||||||||| Sbjct: 18857 taggaaattttctgcatttt 18876
>gb|AC090015.6| Homo sapiens 12 BAC RP11-711C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186236 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aatatttatgaaaatttctg 130 |||||||||||||||||||| Sbjct: 179518 aatatttatgaaaatttctg 179537
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tttctgcatttttctcctat 212 |||||||||||||||||||| Sbjct: 19598287 tttctgcatttttctcctat 19598268
>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete sequence Length = 216754 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 ttgctttcagcatatcctttctgc 483 |||||||||||||||||| ||||| Sbjct: 156247 ttgctttcagcatatcctctctgc 156224 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,782,663 Number of Sequences: 3902068 Number of extensions: 5782663 Number of successful extensions: 123885 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123444 Number of HSP's gapped (non-prelim): 436 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)