Clone Information

BLAST Search Result

Clone Name	rbah62a08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_187458.1\| Oryza sativa (japonica cultivar-group), predic...	84	7e-13
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	84	7e-13
3	gb\|AC135205.4\| Oryza sativa (japonica cultivar-group) chromosome...	84	7e-13
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	84	7e-13
5	dbj\|AK065578.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	84	7e-13
6	gb\|CP000285.1\| Chromohalobacter salexigens DSM 3043, complete ge...	44	0.58
7	gb\|AY105790.1\| Zea mays PCO079761 mRNA sequence	44	0.58
8	gb\|AE008384.1\| Methanosarcina mazei strain Goe1, complete genome	44	0.58
9	ref\|XM_705696.1\| Candida albicans SC5314 hypothetical protein (C...	42	2.3
10	ref\|XM_705683.1\| Candida albicans SC5314 hypothetical protein (C...	42	2.3
11	emb\|AL022576.2\|HS20J23 Human DNA sequence from clone RP1-20J23 o...	42	2.3
12	gb\|AC105748.2\| Homo sapiens chromosome 3 clone RP11-532I6, compl...	42	2.3
13	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	42	2.3
14	gb\|AC122263.5\| Mus musculus BAC clone RP23-190O11 from 15, compl...	42	2.3
15	gb\|AC166112.2\| Mus musculus BAC clone RP23-63L7 from chromosome ...	40	9.1
16	gb\|AC134053.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
17	gb\|AC108224.6\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
18	gb\|CP000117.1\| Anabaena variabilis ATCC 29413 chromosome, comple...	40	9.1
19	gb\|AC124552.3\| Mus musculus BAC clone RP23-222M11 from chromosom...	40	9.1
20	gb\|AC122850.4\| Mus musculus BAC clone RP23-167J19 from 10, compl...	40	9.1
21	gb\|AC107736.10\| Mus musculus chromosome 7, clone RP23-354B2, com...	40	9.1
22	ref\|XM_674112.1\| Plasmodium berghei strain ANKA hypothetical pro...	40	9.1
23	gb\|DQ153984.1\| Gossypium arboreum auxin response factor 2 (ARF2)...	40	9.1
24	emb\|AL158159.14\| Human DNA sequence from clone RP11-498N2 on chr...	40	9.1
25	gb\|BC053925.1\| Mus musculus cDNA clone IMAGE:6311688, partial cds	40	9.1
26	emb\|AL731601.3\|OSJN00245 Oryza sativa genomic DNA, chromosome 4,...	40	9.1
27	emb\|AL606656.3\|OSJN00099 Oryza sativa genomic DNA, chromosome 4,...	40	9.1
28	gb\|BC068307.1\| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clo...	40	9.1
29	gb\|AC105224.8\| Homo sapiens chromosome 18, clone RP11-689E3, com...	40	9.1
30	gb\|AC073175.4\| Homo sapiens chromosome 05 clone RP11-319P13, com...	40	9.1
31	gb\|AF342813.1\|AF342813 Didelphis virginiana mannose-6-phosphate/...	40	9.1
32	gb\|AC010587.6\| Homo sapiens chromosome 5 clone CTC-394G3, comple...	40	9.1
33	dbj\|AK078840.1\| Mus musculus adult male colon cDNA, RIKEN full-l...	40	9.1
34	dbj\|AK014773.1\| Mus musculus 0 day neonate head cDNA, RIKEN full...	40	9.1
35	emb\|BX649257.8\| Zebrafish DNA sequence from clone CH211-197L9 in...	40	9.1
36	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
37	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
38	ref\|NM_053083.2\| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA	40	9.1
39	gb\|AC006927.27\| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Ca...	40	9.1
40	gb\|AC018513.5\|AC018513 Homo sapiens chromosome 14 clone RP11-58H...	40	9.1
41	dbj\|BA000019.2\| Nostoc sp. PCC 7120 DNA, complete genome	40	9.1
42	gb\|AC010227.5\|AC010227 Homo sapiens chromosome 5 clone CTC-289C9...	40	9.1
43	gb\|AC008893.4\|AC008893 Homo sapiens chromosome 5 clone CTD-2228J...	40	9.1
44	emb\|BX640495.10\| Zebrafish DNA sequence from clone CH211-107H7 i...	40	9.1
45	gb\|AC090015.6\| Homo sapiens 12 BAC RP11-711C17 (Roswell Park Can...	40	9.1
46	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
47	emb\|AL672266.9\| Mouse DNA sequence from clone RP23-342A10 on chr...	40	9.1

>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 119/145 (82%)
 Strand = Plus / Minus

                                                                       
Query: 515 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574
           |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 817 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 758

                                                                       
Query: 575 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634
           |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 757 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 698

                                    
Query: 635 acctncgccttctgtaactgtatgg 659
           ||||    |||||||||| ||||||
Sbjct: 697 acctctctcttctgtaacggtatgg 673



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 357 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416
           |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 969 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 910

                       
Query: 417 agaacgcctctt 428
           |||| |||||||
Sbjct: 909 agaatgcctctt 898

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 119/145 (82%)
 Strand = Plus / Plus

                                                                           
Query: 515     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8740278 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8740337

                                                                           
Query: 575     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8740338 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8740397

                                        
Query: 635     acctncgccttctgtaactgtatgg 659
               ||||    |||||||||| ||||||
Sbjct: 8740398 acctctctcttctgtaacggtatgg 8740422



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 357     tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8740126 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8740185

                           
Query: 417     agaacgcctctt 428
               |||| |||||||
Sbjct: 8740186 agaatgcctctt 8740197

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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 119/145 (82%)
 Strand = Plus / Plus

                                                                         
Query: 515   gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574
             |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 83929 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 83988

                                                                         
Query: 575   tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634
             |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 83989 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 84048

                                      
Query: 635   acctncgccttctgtaactgtatgg 659
             ||||    |||||||||| ||||||
Sbjct: 84049 acctctctcttctgtaacggtatgg 84073



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                         
Query: 357   tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416
             |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 83777 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 83836

                         
Query: 417   agaacgcctctt 428
             |||| |||||||
Sbjct: 83837 agaatgcctctt 83848

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 119/145 (82%)
 Strand = Plus / Plus

                                                                           
Query: 515     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8738113 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8738172

                                                                           
Query: 575     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8738173 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8738232

                                        
Query: 635     acctncgccttctgtaactgtatgg 659
               ||||    |||||||||| ||||||
Sbjct: 8738233 acctctctcttctgtaacggtatgg 8738257



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 357     tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8737961 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8738020

                           
Query: 417     agaacgcctctt 428
               |||| |||||||
Sbjct: 8738021 agaatgcctctt 8738032

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>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
            insert sequence
          Length = 1438

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 119/145 (82%)
 Strand = Plus / Minus

                                                                        
Query: 515  gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 574
            |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 1076 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 1017

                                                                        
Query: 575  tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 634
            |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 1016 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 957

                                     
Query: 635  acctncgccttctgtaactgtatgg 659
            ||||    |||||||||| ||||||
Sbjct: 956  acctctctcttctgtaacggtatgg 932



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 357  tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 416
            |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 1228 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 1169

                        
Query: 417  agaacgcctctt 428
            |||| |||||||
Sbjct: 1168 agaatgcctctt 1157

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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 439    ggtgacctgctgcgcgatgccttgct 464
              ||||||||| ||||||||||||||||
Sbjct: 352154 ggtgacctggtgcgcgatgccttgct 352179

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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 357  tgagcgctccctggagacggacctcgagcatgaactgcggct 398
            ||||||||||||||| || ||||| ||| | |||||||||||
Sbjct: 1260 tgagcgctccctggacacagacctggagtacgaactgcggct 1219

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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 25      atcttataaacaaaggaaaatt 46
               ||||||||||||||||||||||
Sbjct: 2629074 atcttataaacaaaggaaaatt 2629053

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>ref|XM_705696.1| Candida albicans SC5314 hypothetical protein (CaO19.3758), mRNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 236  aagatgttaacgatgacgaaataca 260
            |||||||||||||||| ||||||||
Sbjct: 1166 aagatgttaacgatgaagaaataca 1190

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>ref|XM_705683.1| Candida albicans SC5314 hypothetical protein (CaO19.11242), mRNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 236  aagatgttaacgatgacgaaataca 260
            |||||||||||||||| ||||||||
Sbjct: 1166 aagatgttaacgatgaagaaataca 1190

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>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2
             Contains a ras-related C3 botulinum toxin substrate 1 (rho
             family, small GTP binding protein Rac1) (RAC1) pseudogene
             (LOC286472) and a CpG island, complete sequence
          Length = 137111

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   cagactgcaatttaagatgtt 243
             |||||||||||||||||||||
Sbjct: 99923 cagactgcaatttaagatgtt 99903

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>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence
          Length = 162258

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 487    gaacagctccttgattcttct 507
              |||||||||||||||||||||
Sbjct: 102961 gaacagctccttgattcttct 102941

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 340     caggtgcttgatgaggttgag 360
               |||||||||||||||||||||
Sbjct: 1782657 caggtgcttgatgaggttgag 1782677

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>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence
          Length = 207234

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     tcatctgaaacaaagaaatga 103
              |||||||||||||||||||||
Sbjct: 196725 tcatctgaaacaaagaaatga 196745

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>gb|AC166112.2| Mus musculus BAC clone RP23-63L7 from chromosome 9, complete sequence
          Length = 243289

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tgaaacaaagaaatgacctc 107
              ||||||||||||||||||||
Sbjct: 158005 tgaaacaaagaaatgacctc 158024

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>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0005H02, complete sequence
          Length = 144882

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   tttctgcatttttctcctat 212
             ||||||||||||||||||||
Sbjct: 13390 tttctgcatttttctcctat 13371

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>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F07,
              complete sequence
          Length = 175703

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    tttctgcatttttctcctat 212
              ||||||||||||||||||||
Sbjct: 157289 tttctgcatttttctcctat 157270

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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     attttctgcatttttctcct 210
               ||||||||||||||||||||
Sbjct: 5561837 attttctgcatttttctcct 5561818

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>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete
             sequence
          Length = 237281

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   taactccgtcttctgttcct 581
             ||||||||||||||||||||
Sbjct: 94059 taactccgtcttctgttcct 94040

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>gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, complete sequence
          Length = 234973

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    taggcaatctgtaggaaattttct 197
              ||||||||||||| ||||||||||
Sbjct: 176074 taggcaatctgtaagaaattttct 176051

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>gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, complete sequence
          Length = 272413

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    ggaaattttctgcatttttc 206
              ||||||||||||||||||||
Sbjct: 137912 ggaaattttctgcatttttc 137893

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>ref|XM_674112.1| Plasmodium berghei strain ANKA hypothetical protein (PB000589.00.0)
            partial mRNA
          Length = 3570

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  aaattttctgcatttttctc 208
            ||||||||||||||||||||
Sbjct: 2210 aaattttctgcatttttctc 2191

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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 464  tttcagcatatcctttctgc 483
            ||||||||||||||||||||
Sbjct: 3500 tttcagcatatcctttctgc 3519

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>emb|AL158159.14| Human DNA sequence from clone RP11-498N2 on chromosome 9 Contains the
             3' end of the CHAC gene for chorea acanthocytosis, the 3'
             end of the GNA14 gene for guanine nucleotide binding
             protein (G protein) alpha 14 and the 5' end of a novel
             gene, complete sequence
          Length = 167006

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gtttgagttagagatcttat 31
             ||||||||||||||||||||
Sbjct: 59589 gtttgagttagagatcttat 59608

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>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 562  taactccgtcttctgttcct 581
            ||||||||||||||||||||
Sbjct: 1627 taactccgtcttctgttcct 1608

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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 305   aacatccaaagtcatcaaggcact 328
             |||||| |||||||||||||||||
Sbjct: 55797 aacatcaaaagtcatcaaggcact 55774

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>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
             complete sequence
          Length = 123272

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   aatttctgcgttttttccgt 142
             ||||||||||||||||||||
Sbjct: 67025 aatttctgcgttttttccgt 67044

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>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593
            IMAGE:30059745), complete cds
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 562  taactccgtcttctgttcct 581
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207

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>gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, complete sequence
          Length = 199051

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    attttctgcatttttctcct 210
              ||||||||||||||||||||
Sbjct: 127187 attttctgcatttttctcct 127206

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>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence
          Length = 173707

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   gaaatacagctgcttcacta 272
             ||||||||||||||||||||
Sbjct: 84899 gaaatacagctgcttcacta 84918

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>gb|AF342813.1|AF342813 Didelphis virginiana mannose-6-phosphate/insulin-like growth factor
            II receptor (m6p/igf2r) mRNA, complete cds
          Length = 8916

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  atccttgtggaataggcaat 181
            ||||||||||||||||||||
Sbjct: 2708 atccttgtggaataggcaat 2689

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>gb|AC010587.6| Homo sapiens chromosome 5 clone CTC-394G3, complete sequence
          Length = 94536

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gccaatatttatgaaaattt 127
             ||||||||||||||||||||
Sbjct: 31859 gccaatatttatgaaaattt 31878

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>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030013K10 product:hypothetical protein,
           full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 taactccgtcttctgttcct 581
           ||||||||||||||||||||
Sbjct: 23  taactccgtcttctgttcct 4

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>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4833426I20 product:lysyl oxidase-like 4,
           full insert sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 taactccgtcttctgttcct 581
           ||||||||||||||||||||
Sbjct: 987 taactccgtcttctgttcct 968

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>emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in linkage group 23,
            complete sequence
          Length = 182686

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  taggaaattttctgcatttt 204
            ||||||||||||||||||||
Sbjct: 7829 taggaaattttctgcatttt 7810

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 123      aatttctgcgttttttccgt 142
                ||||||||||||||||||||
Sbjct: 35442222 aatttctgcgttttttccgt 35442241



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 305      aacatccaaagtcatcaaggcact 328
                |||||| |||||||||||||||||
Sbjct: 18963873 aacatcaaaagtcatcaaggcact 18963850

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 193      tttctgcatttttctcctat 212
                ||||||||||||||||||||
Sbjct: 19438738 tttctgcatttttctcctat 19438719

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>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 562  taactccgtcttctgttcct 581
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207

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>gb|AC006927.27| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114701

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ccttgtggaataggcaatct 183
             ||||||||||||||||||||
Sbjct: 65197 ccttgtggaataggcaatct 65178

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>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence
          Length = 190773

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aaaatgaggtttgagttaga 23
              ||||||||||||||||||||
Sbjct: 101939 aaaatgaggtttgagttaga 101958

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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    attttctgcatttttctcct 210
              ||||||||||||||||||||
Sbjct: 959560 attttctgcatttttctcct 959541

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>gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9, complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   gaaatacagctgcttcacta 272
             ||||||||||||||||||||
Sbjct: 51495 gaaatacagctgcttcacta 51514

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>gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J24, complete sequence
          Length = 94995

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   gaaatacagctgcttcacta 272
             ||||||||||||||||||||
Sbjct: 27107 gaaatacagctgcttcacta 27088

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>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20,
             complete sequence
          Length = 73842

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   taggaaattttctgcatttt 204
             ||||||||||||||||||||
Sbjct: 18857 taggaaattttctgcatttt 18876

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>gb|AC090015.6| Homo sapiens 12 BAC RP11-711C17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186236

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    aatatttatgaaaatttctg 130
              ||||||||||||||||||||
Sbjct: 179518 aatatttatgaaaatttctg 179537

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 193      tttctgcatttttctcctat 212
                ||||||||||||||||||||
Sbjct: 19598287 tttctgcatttttctcctat 19598268

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>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
              sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 460    ttgctttcagcatatcctttctgc 483
              |||||||||||||||||| |||||
Sbjct: 156247 ttgctttcagcatatcctctctgc 156224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,782,663
Number of Sequences: 3902068
Number of extensions: 5782663
Number of successful extensions: 123885
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123444
Number of HSP's gapped (non-prelim): 436
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result