ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disinte... 31 0.81
2EGFL9_HUMAN (Q6UY11) EGF-like domain-containing protein 9 precur... 30 1.1
3EGFL9_MOUSE (Q8K1E3) EGF-like domain-containing protein 9 precur... 30 1.1
4ABFB_STRCO (O54161) Alpha-L-arabinofuranosidase precursor (EC 3.... 29 2.4
5ABFB_STRLI (P96463) Alpha-L-arabinofuranosidase precursor (EC 3.... 29 3.1
6ENT_ENTCO (P81007) Cytolytic protein enterolobin 29 3.1
7UL06_HHV2H (P89429) Virion protein UL6 29 3.1
8HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subu... 29 3.1
9TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11 29 3.1
10TXH10_ORNHU (P68424) Huwentoxin-10 (Huwentoxin-X) (HwTx-X) 28 4.0
11KR101_HUMAN (P60331) Keratin-associated protein 10-1 (Keratin-as... 28 4.0
12LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase... 28 4.0
13LNK_HUMAN (Q9UQQ2) Lymphocyte-specific adapter protein Lnk (Sign... 28 4.0
14ST32C_MOUSE (Q8QZV4) Serine/threonine-protein kinase 32C (EC 2.7... 28 5.3
15DL_DROME (P10041) Neurogenic locus protein delta precursor 28 5.3
16CX3_NAJME (P01473) Cytotoxin 3 (Component 3.20) 28 6.9
17NIFB_FRAAL (P46044) FeMo cofactor biosynthesis protein nifB 28 6.9
18VGLI_PRVRI (P07646) Glycoprotein GP63 precursor 28 6.9
19Y215_ADE02 (P03291) Hypothetical protein F-215 28 6.9
20ENVE_SALTY (Q56030) Probable lipoprotein envE precursor 28 6.9
21DMD_PIG (Q5GN48) Dystrophin 28 6.9
22ZN759_MOUSE (Q80VM4) Zinc finger protein 579 27 9.0
23RPOB_PROMA (Q7VA29) DNA-directed RNA polymerase beta chain (EC 2... 27 9.0
24RPOB_SYNPX (Q7U8K4) DNA-directed RNA polymerase beta chain (EC 2... 27 9.0
25RPOB_PROMM (Q7V5P1) DNA-directed RNA polymerase beta chain (EC 2... 27 9.0
26RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2... 27 9.0
27DLLB_BRARE (O57409) Delta-like protein B precursor (DeltaB protein) 27 9.0
28MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9) 27 9.0

>ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and|
           metalloproteinase domain 10) (Kuzbanian protein homolog)
           (xKuz)
          Length = 749

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 43  NGSVILRRRE--RLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRVRA 189
           +G VILR++   +  ++ C LFI+ + H F+ RY  T E   A     V+A
Sbjct: 204 SGPVILRKKRAAQAEKNTCQLFIQ-TDHLFYKRYGETREAVIAQISSHVKA 253



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>EGFL9_HUMAN (Q6UY11) EGF-like domain-containing protein 9 precursor (Multiple|
           EGF-like domain protein 9)
          Length = 383

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 231 CQRAPCMDACMHGSCTYAWTCI 166
           C+R   M  C HG+C   W CI
Sbjct: 57  CERCVRMPGCQHGTCHQPWQCI 78



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>EGFL9_MOUSE (Q8K1E3) EGF-like domain-containing protein 9 precursor (Multiple|
           EGF-like domain protein 9) (Endothelial cell-specific
           protein S-1)
          Length = 382

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 231 CQRAPCMDACMHGSCTYAWTCI 166
           C+R   M  C HG+C   W CI
Sbjct: 57  CERCVRMPGCQHGTCHQPWQCI 78



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>ABFB_STRCO (O54161) Alpha-L-arabinofuranosidase precursor (EC 3.2.1.55)|
           (Arabinosidase)
          Length = 475

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = -2

Query: 306 GTEVVLWKWCEGDNQRWKIQP--YY*ACQRAPCMDAC----MHGSCTYAWTCIG 163
           GT V +W    G NQ+W++         +   C++A      +G+    WTC G
Sbjct: 104 GTRVQIWSCSGGANQQWRVNSDGTVVGVESGLCLEAAGAGTANGTAVQLWTCNG 157



 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = -2

Query: 318 GVRDGTEVVLWKWCEGDNQRWKIQPYY*ACQRAPCMDACMHGSCTYAWTCIGI 160
           G  +GT V LW    G NQ+W            P  D       TY W+  G+
Sbjct: 143 GTANGTAVQLWTCNGGGNQKWT------GLTGTPPTDGTCALPSTYRWSSTGV 189



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>ABFB_STRLI (P96463) Alpha-L-arabinofuranosidase precursor (EC 3.2.1.55)|
           (Arabinosidase)
          Length = 475

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = -2

Query: 306 GTEVVLWKWCEGDNQRWKIQP--YY*ACQRAPCMDAC----MHGSCTYAWTCIG 163
           GT V +W    G NQ+W++         +   C++A      +G+    WTC G
Sbjct: 104 GTRVQIWSCSGGRNQQWRVNSDGTVVGVESGLCLEAAGAGTPNGTAVQLWTCNG 157



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = -2

Query: 318 GVRDGTEVVLWKWCEGDNQRWKIQPYY*ACQRAPCMDACMHGSCTYAWTCIGI 160
           G  +GT V LW    G NQ+W            P  D       TY W+  G+
Sbjct: 143 GTPNGTAVQLWTCNGGGNQKWT------GLTGTPPTDGTCALPSTYRWSSTGV 189



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>ENT_ENTCO (P81007) Cytolytic protein enterolobin|
          Length = 485

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = -2

Query: 315 VRDGTEVVLWKWCEGDNQRWKIQPYY*ACQRAPCMDACMHGSCTYAWTCIGISTLMCTYV 136
           ++DG EVV  +    +N       +  A ++     AC+H    +AW   G  T+    V
Sbjct: 165 IKDGNEVVTLRNIGNNN-------FCDALRKCTDKSACIHQYLQFAWNSFGDPTVRTRQV 217

Query: 135 STEETMWAVPD 103
             E   WA  D
Sbjct: 218 VFEVVGWADSD 228



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>UL06_HHV2H (P89429) Virion protein UL6|
          Length = 678

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 252 IQPYY*ACQRAPCMDACMHGSCTYA-----WTCIGISTLMCTYVSTEETMWAVPDEQHAC 88
           + PY+    RAP   A + GS         W  +   T + TY++    ++ V D QHA 
Sbjct: 562 VAPYFEYVLRAPRAGALITGSDVILGEEELWEAVFKKTRLQTYLTDVAALF-VADVQHAA 620

Query: 87  VSR*SLPTP 61
           + R   PTP
Sbjct: 621 LPRPPSPTP 629



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>HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subunit) (HA1)|
          Length = 285

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 342 LNGDKYHGGVRDGTEVVLWKWCEGDNQRWKIQ 247
           LN D++     +   +VLW+W +   Q+W I+
Sbjct: 157 LNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIE 188



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>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11|
          Length = 319

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 86  THACCSSGTAHIVSSVDTYVHMSVDMPMHVHAYVHEPCMHASMH 217
           TH C      H  +   T++H S  + +H H + H  C+H   H
Sbjct: 61  THVC-----THTHTCTHTHIHASTHVCIHTHTFTH-LCIHTLTH 98



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>TXH10_ORNHU (P68424) Huwentoxin-10 (Huwentoxin-X) (HwTx-X)|
          Length = 28

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 249 QPYY*ACQRAPCMDACMHGSCT 184
           +P Y A Q+ PC   C H  CT
Sbjct: 7   KPCYGATQKIPCCGVCSHNKCT 28



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>KR101_HUMAN (P60331) Keratin-associated protein 10-1 (Keratin-associated|
           protein 10.1) (High sulfur keratin-associated protein
           10.1) (Keratin-associated protein 18-1)
           (Keratin-associated protein 18.1)
          Length = 282

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 231 CQRAPCMDACMHGSCTYAWTCIGISTLMCTYVSTEETMWAVPDEQHAC 88
           CQ+A CM  C    C    TC   S+  C   S + T  A    Q +C
Sbjct: 95  CQQACCMPVCCKPVCCLP-TCSKDSSSCCQQSSCQPTCCASSSSQQSC 141



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>LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase 1 (EC|
           1.-.-.-) (Suppressor of presenilin 5) (P110b homolog)
          Length = 770

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 177 WTCIGISTLMCTYVSTEETMWAVPDE 100
           W+ +  S ++CTY+  EE M  +PD+
Sbjct: 554 WSSVPGSKVLCTYIVGEEAMLELPDD 579



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>LNK_HUMAN (Q9UQQ2) Lymphocyte-specific adapter protein Lnk (Signal|
           transduction protein Lnk) (Lymphocyte adapter protein)
          Length = 575

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 284 SGARATTSAGRSSPTTEPASARRAWMHACMARARTRGHASAYPRSCVRTYLLKKR 120
           +G     S+  S+P+  PA+A R W   C        HA A  R   R Y L  R
Sbjct: 2   NGPALQPSSPSSAPSASPAAAPRGWSEFCEL------HAVAAARELARQYWLFAR 50



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>ST32C_MOUSE (Q8QZV4) Serine/threonine-protein kinase 32C (EC 2.7.11.1)|
          Length = 488

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 287 GSGARATTSA---GRSSPTTEPASARRAWMHACMARARTRGHASAYPRSCVRTYLLKKRC 117
           GS A A  S+   GR+ P     S       A   RAR  G A A PR   +    KKR 
Sbjct: 9   GSSAAAPPSSPPPGRARPAGSDVSPALPPPAASQPRARDAGDARAQPRPLFQWSKWKKRM 68

Query: 116 GLSRMNN 96
            +S +++
Sbjct: 69  SMSSISS 75



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>DL_DROME (P10041) Neurogenic locus protein delta precursor|
          Length = 833

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 231 CQRAPCMDACMHGSCTYAWTCI 166
           C        C+HG+C   WTCI
Sbjct: 257 CNECVLEPNCIHGTCNKPWTCI 278



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>CX3_NAJME (P01473) Cytotoxin 3 (Component 3.20)|
          Length = 61

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 145 THERGYADACPRVRARAMHAC 207
           T++RG ADACP+  A   + C
Sbjct: 34  TYKRGCADACPKTSALVKYVC 54



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>NIFB_FRAAL (P46044) FeMo cofactor biosynthesis protein nifB|
          Length = 510

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 281 GARATTSAGRSSPTTEPASARRAWMHAC 198
           G + TTS G S+P  +P  A +   H C
Sbjct: 28  GCKTTTSCGTSAPVQDPEIAEKIANHPC 55



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>VGLI_PRVRI (P07646) Glycoprotein GP63 precursor|
          Length = 350

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
 Frame = +1

Query: 22  VITHTXHNGSVILRRRERLARDACMLFIRD-SPHRFFSR------------YVRTHERGY 162
           V  H   +  ++      L  D  +LF+   SP  +  R            Y R +   Y
Sbjct: 39  VSVHVAGSAVLVPGDAPNLTIDGTLLFLEGPSPSNYSGRVELLRLDPKRACYTREYAAEY 98

Query: 163 ADACPRVRARAMHACIHARRALA 231
            D CPRV   A   C+  R  LA
Sbjct: 99  -DLCPRVHHEAFRGCLRKREPLA 120



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>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 284 SGARATTSAGRSSPTTEPASARRAWMHACMARARTRGHASAYPRSCVRT 138
           SG R  ++  RSS    P ++   W       +R +  +S++P+S ++T
Sbjct: 11  SGTREASTPSRSSWPASPTTSPPPWSEPDAEISRRKRSSSSWPKSPIKT 59



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>ENVE_SALTY (Q56030) Probable lipoprotein envE precursor|
          Length = 173

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 318 GVRDGTEVVLWKWCEGDNQRW 256
           G ++GT ++L+     DNQRW
Sbjct: 108 GTKEGTPIILYSCTGNDNQRW 128



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>DMD_PIG (Q5GN48) Dystrophin|
          Length = 3674

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +2

Query: 251  IFQRWLSPSHHFQSTTSVPSRTP----PWYLSPLR 343
            IF +WL+ + HF   T +P         WYL  L+
Sbjct: 2111 IFNQWLTEAEHFLKKTQIPENWEHAKYKWYLKELQ 2145



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>ZN759_MOUSE (Q80VM4) Zinc finger protein 579|
          Length = 562

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
 Frame = -3

Query: 281 GARATTSAGRSSPTTEPASARRAWMHACMARARTRG--------HASAYPRSCVRTYL-L 129
           G     + G ++P   PA   R W   C    R R         H+ A P  CVR     
Sbjct: 360 GGEGGHNGGDATPARPPAGEPRFWCPECGKGFRRRAHLRQHGVTHSGARPFQCVRCQREF 419

Query: 128 KKRCGLSRMNNMH 90
           K+   L+R   +H
Sbjct: 420 KRLADLARHAQVH 432



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>RPOB_PROMA (Q7VA29) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1096

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 193 LVHVRVDMHRHIHAHVYVR 137
           L+HVRVD  R I+AHV +R
Sbjct: 170 LLHVRVDKTRKINAHVLMR 188



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>RPOB_SYNPX (Q7U8K4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1097

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 193 LVHVRVDMHRHIHAHVYVR 137
           L+HVRVD  R I+AHV +R
Sbjct: 170 LLHVRVDKTRKINAHVLMR 188



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>RPOB_PROMM (Q7V5P1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1097

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 193 LVHVRVDMHRHIHAHVYVR 137
           L+HVRVD  R I+AHV +R
Sbjct: 170 LLHVRVDKTRKINAHVLMR 188



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>RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1095

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 193 LVHVRVDMHRHIHAHVYVR 137
           L+HVRVD  R I+AHV +R
Sbjct: 170 LLHVRVDKTRKINAHVLMR 188



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>DLLB_BRARE (O57409) Delta-like protein B precursor (DeltaB protein)|
          Length = 615

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 234 ACQRAPCMDACMHGSCTYAWTCI 166
           +C        C+HG+C+  W C+
Sbjct: 235 SCSECVHYPGCLHGTCSQPWQCV 257



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>MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9)|
          Length = 543

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 58  LRRRERLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRV 183
           L R+E +  DA + F+ +  HR F+R V       ADA   +
Sbjct: 17  LPRQEEVLTDAALAFVAELLHRRFTRAVTNSSPRRADAAREI 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,379,110
Number of Sequences: 219361
Number of extensions: 1059300
Number of successful extensions: 2991
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2990
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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