ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61l08 |
|---|---|
| Clone Library Name | barley_pub |
>ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and| metalloproteinase domain 10) (Kuzbanian protein homolog) (xKuz) Length = 749 Score = 30.8 bits (68), Expect = 0.81 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +1 Query: 43 NGSVILRRRE--RLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRVRA 189 +G VILR++ + ++ C LFI+ + H F+ RY T E A V+A Sbjct: 204 SGPVILRKKRAAQAEKNTCQLFIQ-TDHLFYKRYGETREAVIAQISSHVKA 253
>EGFL9_HUMAN (Q6UY11) EGF-like domain-containing protein 9 precursor (Multiple| EGF-like domain protein 9) Length = 383 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 Query: 231 CQRAPCMDACMHGSCTYAWTCI 166 C+R M C HG+C W CI Sbjct: 57 CERCVRMPGCQHGTCHQPWQCI 78
>EGFL9_MOUSE (Q8K1E3) EGF-like domain-containing protein 9 precursor (Multiple| EGF-like domain protein 9) (Endothelial cell-specific protein S-1) Length = 382 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 Query: 231 CQRAPCMDACMHGSCTYAWTCI 166 C+R M C HG+C W CI Sbjct: 57 CERCVRMPGCQHGTCHQPWQCI 78
>ABFB_STRCO (O54161) Alpha-L-arabinofuranosidase precursor (EC 3.2.1.55)| (Arabinosidase) Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = -2 Query: 306 GTEVVLWKWCEGDNQRWKIQP--YY*ACQRAPCMDAC----MHGSCTYAWTCIG 163 GT V +W G NQ+W++ + C++A +G+ WTC G Sbjct: 104 GTRVQIWSCSGGANQQWRVNSDGTVVGVESGLCLEAAGAGTANGTAVQLWTCNG 157 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = -2 Query: 318 GVRDGTEVVLWKWCEGDNQRWKIQPYY*ACQRAPCMDACMHGSCTYAWTCIGI 160 G +GT V LW G NQ+W P D TY W+ G+ Sbjct: 143 GTANGTAVQLWTCNGGGNQKWT------GLTGTPPTDGTCALPSTYRWSSTGV 189
>ABFB_STRLI (P96463) Alpha-L-arabinofuranosidase precursor (EC 3.2.1.55)| (Arabinosidase) Length = 475 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = -2 Query: 306 GTEVVLWKWCEGDNQRWKIQP--YY*ACQRAPCMDAC----MHGSCTYAWTCIG 163 GT V +W G NQ+W++ + C++A +G+ WTC G Sbjct: 104 GTRVQIWSCSGGRNQQWRVNSDGTVVGVESGLCLEAAGAGTPNGTAVQLWTCNG 157 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = -2 Query: 318 GVRDGTEVVLWKWCEGDNQRWKIQPYY*ACQRAPCMDACMHGSCTYAWTCIGI 160 G +GT V LW G NQ+W P D TY W+ G+ Sbjct: 143 GTPNGTAVQLWTCNGGGNQKWT------GLTGTPPTDGTCALPSTYRWSSTGV 189
>ENT_ENTCO (P81007) Cytolytic protein enterolobin| Length = 485 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/71 (26%), Positives = 29/71 (40%) Frame = -2 Query: 315 VRDGTEVVLWKWCEGDNQRWKIQPYY*ACQRAPCMDACMHGSCTYAWTCIGISTLMCTYV 136 ++DG EVV + +N + A ++ AC+H +AW G T+ V Sbjct: 165 IKDGNEVVTLRNIGNNN-------FCDALRKCTDKSACIHQYLQFAWNSFGDPTVRTRQV 217 Query: 135 STEETMWAVPD 103 E WA D Sbjct: 218 VFEVVGWADSD 228
>UL06_HHV2H (P89429) Virion protein UL6| Length = 678 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Frame = -2 Query: 252 IQPYY*ACQRAPCMDACMHGSCTYA-----WTCIGISTLMCTYVSTEETMWAVPDEQHAC 88 + PY+ RAP A + GS W + T + TY++ ++ V D QHA Sbjct: 562 VAPYFEYVLRAPRAGALITGSDVILGEEELWEAVFKKTRLQTYLTDVAALF-VADVQHAA 620 Query: 87 VSR*SLPTP 61 + R PTP Sbjct: 621 LPRPPSPTP 629
>HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subunit) (HA1)| Length = 285 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -2 Query: 342 LNGDKYHGGVRDGTEVVLWKWCEGDNQRWKIQ 247 LN D++ + +VLW+W + Q+W I+ Sbjct: 157 LNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIE 188
>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11| Length = 319 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = +2 Query: 86 THACCSSGTAHIVSSVDTYVHMSVDMPMHVHAYVHEPCMHASMH 217 TH C H + T++H S + +H H + H C+H H Sbjct: 61 THVC-----THTHTCTHTHIHASTHVCIHTHTFTH-LCIHTLTH 98
>TXH10_ORNHU (P68424) Huwentoxin-10 (Huwentoxin-X) (HwTx-X)| Length = 28 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 Query: 249 QPYY*ACQRAPCMDACMHGSCT 184 +P Y A Q+ PC C H CT Sbjct: 7 KPCYGATQKIPCCGVCSHNKCT 28
>KR101_HUMAN (P60331) Keratin-associated protein 10-1 (Keratin-associated| protein 10.1) (High sulfur keratin-associated protein 10.1) (Keratin-associated protein 18-1) (Keratin-associated protein 18.1) Length = 282 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 231 CQRAPCMDACMHGSCTYAWTCIGISTLMCTYVSTEETMWAVPDEQHAC 88 CQ+A CM C C TC S+ C S + T A Q +C Sbjct: 95 CQQACCMPVCCKPVCCLP-TCSKDSSSCCQQSSCQPTCCASSSSQQSC 141
>LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase 1 (EC| 1.-.-.-) (Suppressor of presenilin 5) (P110b homolog) Length = 770 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 177 WTCIGISTLMCTYVSTEETMWAVPDE 100 W+ + S ++CTY+ EE M +PD+ Sbjct: 554 WSSVPGSKVLCTYIVGEEAMLELPDD 579
>LNK_HUMAN (Q9UQQ2) Lymphocyte-specific adapter protein Lnk (Signal| transduction protein Lnk) (Lymphocyte adapter protein) Length = 575 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -3 Query: 284 SGARATTSAGRSSPTTEPASARRAWMHACMARARTRGHASAYPRSCVRTYLLKKR 120 +G S+ S+P+ PA+A R W C HA A R R Y L R Sbjct: 2 NGPALQPSSPSSAPSASPAAAPRGWSEFCEL------HAVAAARELARQYWLFAR 50
>ST32C_MOUSE (Q8QZV4) Serine/threonine-protein kinase 32C (EC 2.7.11.1)| Length = 488 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Frame = -3 Query: 287 GSGARATTSA---GRSSPTTEPASARRAWMHACMARARTRGHASAYPRSCVRTYLLKKRC 117 GS A A S+ GR+ P S A RAR G A A PR + KKR Sbjct: 9 GSSAAAPPSSPPPGRARPAGSDVSPALPPPAASQPRARDAGDARAQPRPLFQWSKWKKRM 68 Query: 116 GLSRMNN 96 +S +++ Sbjct: 69 SMSSISS 75
>DL_DROME (P10041) Neurogenic locus protein delta precursor| Length = 833 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -2 Query: 231 CQRAPCMDACMHGSCTYAWTCI 166 C C+HG+C WTCI Sbjct: 257 CNECVLEPNCIHGTCNKPWTCI 278
>CX3_NAJME (P01473) Cytotoxin 3 (Component 3.20)| Length = 61 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 145 THERGYADACPRVRARAMHAC 207 T++RG ADACP+ A + C Sbjct: 34 TYKRGCADACPKTSALVKYVC 54
>NIFB_FRAAL (P46044) FeMo cofactor biosynthesis protein nifB| Length = 510 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 281 GARATTSAGRSSPTTEPASARRAWMHAC 198 G + TTS G S+P +P A + H C Sbjct: 28 GCKTTTSCGTSAPVQDPEIAEKIANHPC 55
>VGLI_PRVRI (P07646) Glycoprotein GP63 precursor| Length = 350 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 13/83 (15%) Frame = +1 Query: 22 VITHTXHNGSVILRRRERLARDACMLFIRD-SPHRFFSR------------YVRTHERGY 162 V H + ++ L D +LF+ SP + R Y R + Y Sbjct: 39 VSVHVAGSAVLVPGDAPNLTIDGTLLFLEGPSPSNYSGRVELLRLDPKRACYTREYAAEY 98 Query: 163 ADACPRVRARAMHACIHARRALA 231 D CPRV A C+ R LA Sbjct: 99 -DLCPRVHHEAFRGCLRKREPLA 120
>Y215_ADE02 (P03291) Hypothetical protein F-215| Length = 215 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = -3 Query: 284 SGARATTSAGRSSPTTEPASARRAWMHACMARARTRGHASAYPRSCVRT 138 SG R ++ RSS P ++ W +R + +S++P+S ++T Sbjct: 11 SGTREASTPSRSSWPASPTTSPPPWSEPDAEISRRKRSSSSWPKSPIKT 59
>ENVE_SALTY (Q56030) Probable lipoprotein envE precursor| Length = 173 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 318 GVRDGTEVVLWKWCEGDNQRW 256 G ++GT ++L+ DNQRW Sbjct: 108 GTKEGTPIILYSCTGNDNQRW 128
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = +2 Query: 251 IFQRWLSPSHHFQSTTSVPSRTP----PWYLSPLR 343 IF +WL+ + HF T +P WYL L+ Sbjct: 2111 IFNQWLTEAEHFLKKTQIPENWEHAKYKWYLKELQ 2145
>ZN759_MOUSE (Q80VM4) Zinc finger protein 579| Length = 562 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%) Frame = -3 Query: 281 GARATTSAGRSSPTTEPASARRAWMHACMARARTRG--------HASAYPRSCVRTYL-L 129 G + G ++P PA R W C R R H+ A P CVR Sbjct: 360 GGEGGHNGGDATPARPPAGEPRFWCPECGKGFRRRAHLRQHGVTHSGARPFQCVRCQREF 419 Query: 128 KKRCGLSRMNNMH 90 K+ L+R +H Sbjct: 420 KRLADLARHAQVH 432
>RPOB_PROMA (Q7VA29) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1096 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 193 LVHVRVDMHRHIHAHVYVR 137 L+HVRVD R I+AHV +R Sbjct: 170 LLHVRVDKTRKINAHVLMR 188
>RPOB_SYNPX (Q7U8K4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1097 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 193 LVHVRVDMHRHIHAHVYVR 137 L+HVRVD R I+AHV +R Sbjct: 170 LLHVRVDKTRKINAHVLMR 188
>RPOB_PROMM (Q7V5P1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1097 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 193 LVHVRVDMHRHIHAHVYVR 137 L+HVRVD R I+AHV +R Sbjct: 170 LLHVRVDKTRKINAHVLMR 188
>RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1095 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 193 LVHVRVDMHRHIHAHVYVR 137 L+HVRVD R I+AHV +R Sbjct: 170 LLHVRVDKTRKINAHVLMR 188
>DLLB_BRARE (O57409) Delta-like protein B precursor (DeltaB protein)| Length = 615 Score = 27.3 bits (59), Expect = 9.0 Identities = 7/23 (30%), Positives = 12/23 (52%) Frame = -2 Query: 234 ACQRAPCMDACMHGSCTYAWTCI 166 +C C+HG+C+ W C+ Sbjct: 235 SCSECVHYPGCLHGTCSQPWQCV 257
>MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9)| Length = 543 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 58 LRRRERLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRV 183 L R+E + DA + F+ + HR F+R V ADA + Sbjct: 17 LPRQEEVLTDAALAFVAELLHRRFTRAVTNSSPRRADAAREI 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,379,110 Number of Sequences: 219361 Number of extensions: 1059300 Number of successful extensions: 2991 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2990 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
