Clone Name | rbah61l07 |
---|---|
Clone Library Name | barley_pub |
>HSP90_CANAL (P46598) Heat shock protein 90 homolog| Length = 707 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -1 Query: 595 KFTFNTFLDACAEAKKWNEFEYAFRKMLSNGYHFD--ERRHLRMVLDAYRSGKEQLLEDI 422 K TF + + +++N+F AF K + G H D R+ L +L Y + + + + Sbjct: 395 KKMIETFNEISEDQEQFNQFYTAFSKNIKLGIHEDAQNRQSLAKLLRFYSTKSSEEMTSL 454 Query: 421 WDYLCR 404 DY+ R Sbjct: 455 SDYVTR 460
>BLM_CAEEL (O18017) Bloom syndrome protein homolog (EC 3.6.1.-) (RecQ helicase| homolog) Length = 988 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2 Query: 558 KQKSGMNSSMHFAKCYLTATILTKEGTYAWYLMPIGAGRSSCWK 427 K K G N H K + +T++ G + LMP GAG+S C++ Sbjct: 240 KSKFGFNQFRHRQKQCILSTLM---GHDTFVLMPTGAGKSLCYQ 280
>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 825 Score = 29.6 bits (65), Expect = 7.3 Identities = 11/42 (26%), Positives = 22/42 (52%) Frame = -1 Query: 289 GNVSSKSWSSLLNRNADLLEEESVAELVHKLDGLSRPGSPCN 164 G ++ W + R +L+++ S+AE V+ G+ PC+ Sbjct: 46 GRINDGKWQAAFYRARELVDQMSIAEKVNLTTGVGSASGPCS 87
>NMD2_SCHPO (O13824) Nonsense-mediated mRNA decay protein 2 (Up-frameshift| suppressor 2) Length = 1049 Score = 29.3 bits (64), Expect = 9.6 Identities = 17/78 (21%), Positives = 35/78 (44%) Frame = -1 Query: 595 KFTFNTFLDACAEAKKWNEFEYAFRKMLSNGYHFDERRHLRMVLDAYRSGKEQLLEDIWD 416 K +FL+A + K + + +L N HF +++ +S KE+ L D+ Sbjct: 597 KLQMQSFLEAIQKKKLASALASQDQLVLENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQ 656 Query: 415 YLCRNGRVPPAAMIMERF 362 ++ V P +++ +F Sbjct: 657 IRLKDDNVFPTLLLLRKF 674
>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)| Length = 129 Score = 29.3 bits (64), Expect = 9.6 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = -1 Query: 229 EESVAELVHKLDGLSRPGSPCNSLYENVMSGCTEFLGGSGGKAPSDG 89 EE V L +++ L + +E + S + LGG+GG P+ G Sbjct: 77 EEKVNSLEVRVETLEKQEERVQEQFEELQSELQQMLGGAGGAGPAGG 123
>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (B150) (RNA polymerase II subunit 2) Length = 1224 Score = 29.3 bits (64), Expect = 9.6 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = -1 Query: 358 LKLRQGHTTAALSCISSFQESKIGNVSSKSWSSLLNRN----ADLLEEESV 218 LK+R+GH ++ E +V +WSSLLN D EEES+ Sbjct: 651 LKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESI 701 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,807,308 Number of Sequences: 219361 Number of extensions: 2017033 Number of successful extensions: 6695 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6425 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6693 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)