>HSP90_CANAL (P46598) Heat shock protein 90 homolog|
          Length = 707

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 595 KFTFNTFLDACAEAKKWNEFEYAFRKMLSNGYHFD--ERRHLRMVLDAYRSGKEQLLEDI 422
           K    TF +   + +++N+F  AF K +  G H D   R+ L  +L  Y +   + +  +
Sbjct: 395 KKMIETFNEISEDQEQFNQFYTAFSKNIKLGIHEDAQNRQSLAKLLRFYSTKSSEEMTSL 454

Query: 421 WDYLCR 404
            DY+ R
Sbjct: 455 SDYVTR 460

>BLM_CAEEL (O18017) Bloom syndrome protein homolog (EC 3.6.1.-) (RecQ helicase|
           homolog)
          Length = 988

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 558 KQKSGMNSSMHFAKCYLTATILTKEGTYAWYLMPIGAGRSSCWK 427
           K K G N   H  K  + +T++   G   + LMP GAG+S C++
Sbjct: 240 KSKFGFNQFRHRQKQCILSTLM---GHDTFVLMPTGAGKSLCYQ 280

>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 825

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 289 GNVSSKSWSSLLNRNADLLEEESVAELVHKLDGLSRPGSPCN 164
           G ++   W +   R  +L+++ S+AE V+   G+     PC+
Sbjct: 46  GRINDGKWQAAFYRARELVDQMSIAEKVNLTTGVGSASGPCS 87

>NMD2_SCHPO (O13824) Nonsense-mediated mRNA decay protein 2 (Up-frameshift|
           suppressor 2)
          Length = 1049

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 17/78 (21%), Positives = 35/78 (44%)
 Frame = -1

Query: 595 KFTFNTFLDACAEAKKWNEFEYAFRKMLSNGYHFDERRHLRMVLDAYRSGKEQLLEDIWD 416
           K    +FL+A  + K  +      + +L N  HF       +++   +S KE+ L D+  
Sbjct: 597 KLQMQSFLEAIQKKKLASALASQDQLVLENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQ 656

Query: 415 YLCRNGRVPPAAMIMERF 362
              ++  V P  +++ +F
Sbjct: 657 IRLKDDNVFPTLLLLRKF 674

>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)|
          Length = 129

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 229 EESVAELVHKLDGLSRPGSPCNSLYENVMSGCTEFLGGSGGKAPSDG 89
           EE V  L  +++ L +        +E + S   + LGG+GG  P+ G
Sbjct: 77  EEKVNSLEVRVETLEKQEERVQEQFEELQSELQQMLGGAGGAGPAGG 123

>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC|
           2.7.7.6) (B150) (RNA polymerase II subunit 2)
          Length = 1224

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -1

Query: 358 LKLRQGHTTAALSCISSFQESKIGNVSSKSWSSLLNRN----ADLLEEESV 218
           LK+R+GH    ++      E    +V   +WSSLLN       D  EEES+
Sbjct: 651 LKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESI 701


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,807,308
Number of Sequences: 219361
Number of extensions: 2017033
Number of successful extensions: 6695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6693
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)