ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191994.1| Oryza sativa (japonica cultivar-group), predic... 228 2e-56
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
3dbj|AP003374.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
5gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, co... 44 0.54
6dbj|AB090813.1| Anopheles gambiae retrotransposon RTAg4 DNA, com... 44 0.54
7emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chr... 44 0.54
8gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, compl... 42 2.1
9gb|AC116507.9| Mus musculus chromosome 19, clone RP24-309C17, co... 42 2.1
10gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosom... 42 2.1
11gb|AC108950.4| Mus musculus BAC clone RP23-458E21 from chromosom... 42 2.1
12gb|AC079244.29| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 2.1
13gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 2.1
14dbj|AP001591.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.1
15emb|AL844490.4| Mouse DNA sequence from clone RP23-98P13 on chro... 42 2.1
16dbj|AP000753.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.1
17gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, com... 40 8.4
18gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 8.4
19gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 40 8.4
20ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING fin... 40 8.4
21ref|XM_500587.1| Yarrowia lipolytica CLIB122, YALI0B06919g predi... 40 8.4
22emb|AL078633.32|HS1005F21 Human DNA sequence from clone RP5-1005... 40 8.4
23emb|AL033381.2|HS856G1 Human DNA sequence from clone RP5-856G1 o... 40 8.4
24emb|AJ278954.1|SLO278954 Spraguea lophii partial rpb1 gene for R... 40 8.4
25gb|AF462673.1| Homo sapiens isolate PELIZ immunoglobulin light c... 40 8.4
26gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome... 40 8.4
27gb|DQ427831.1| Sorghum propinquum locus pHER1D05 genomic sequence 40 8.4
28gb|DQ427830.1| Sorghum bicolor voucher PI585454 locus pHER1D05 g... 40 8.4
29gb|DQ427829.1| Sorghum bicolor voucher PI267539 locus pHER1D05 g... 40 8.4
30gb|DQ427828.1| Sorghum bicolor voucher PI267408 locus pHER1D05 g... 40 8.4
31gb|DQ427827.1| Sorghum bicolor voucher PI221607 locus pHER1D05 g... 40 8.4
32gb|DQ427826.1| Sorghum bicolor voucher PI152702 locus pHER1D05 g... 40 8.4
33gb|DQ427825.1| Sorghum bicolor voucher NSL92371 locus pHER1D05 g... 40 8.4
34gb|DQ427824.1| Sorghum bicolor voucher NSL87666 locus pHER1D05 g... 40 8.4
35gb|DQ427823.1| Sorghum bicolor voucher NSL77217 locus pHER1D05 g... 40 8.4
36gb|DQ427822.1| Sorghum bicolor voucher NSL77034 locus pHER1D05 g... 40 8.4
37gb|DQ427821.1| Sorghum bicolor voucher NSL56174 locus pHER1D05 g... 40 8.4
38gb|DQ427820.1| Sorghum bicolor voucher NSL56003 locus pHER1D05 g... 40 8.4
39gb|DQ427819.1| Sorghum bicolor voucher NSL55243 locus pHER1D05 g... 40 8.4
40gb|DQ427818.1| Sorghum bicolor voucher NSL51365 locus pHER1D05 g... 40 8.4
41gb|DQ427817.1| Sorghum bicolor voucher NSL51030 locus pHER1D05 g... 40 8.4
42gb|DQ427816.1| Sorghum bicolor voucher NSL50875 locus pHER1D05 g... 40 8.4
43gb|DQ427815.1| Sorghum bicolor voucher BTx623 locus pHER1D05 gen... 40 8.4
44gb|AC098873.3| Homo sapiens BAC clone RP11-793H20 from 4, comple... 40 8.4
45gb|AC097468.3| Homo sapiens BAC clone RP11-33O4 from 2, complete... 40 8.4
46gb|AC003014.1|AC003014 Human PAC clone RP1-290B4 from Xq23, comp... 40 8.4
47emb|CR391915.9| Zebrafish DNA sequence from clone CH211-130O18 i... 40 8.4
48emb|AL122013.5|CNS01DSU Human chromosome 14 DNA sequence BAC R-2... 40 8.4
49emb|CT025606.10| Mouse DNA sequence from clone RP24-120D14 on ch... 40 8.4
50emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 8.4
51emb|AL732572.10| Mouse DNA sequence from clone RP23-32C16 on chr... 40 8.4 
>ref|NM_191994.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3138

 Score =  228 bits (115), Expect = 2e-56
 Identities = 277/331 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  tggaggaaacgttgcctatcttgctctcctggaagctgctgatgcaggagagtgctgccg 333
            |||| ||||| |||| ||||||||||||||| ||| |  |||||||||| |  || ||| 
Sbjct: 2770 tggatgaaacattgcgtatcttgctctcctgaaaggtattgatgcaggacatcgccgcca 2711

                                                                        
Query: 334  tcgtatggccttgtctcagttttaggcagaatctctccattatcatggcagccggtggaa 393
              || |  |||||||||||||| ||||| ||||| |||||||||||||  || || ||||
Sbjct: 2710 ctgtgtccccttgtctcagtttcaggcaaaatctttccattatcatgggggcaggcggaa 2651

                                                                        
Query: 394  cccgaccattgcgacacaggtagtcccatatgtcttccagcagctgctccttcccgctcc 453
            | || ||||   | |||| |||||||||||  |||||||  | ||||||||||||| |||
Sbjct: 2650 ctcggccatattggcacatgtagtcccatacatcttccaataactgctccttcccgttcc 2591

                                                                        
Query: 454  tataggcatcaagtaccatgcgtaggtgccttctttcgtcaaaatggtagccgttagata 513
            |||| |||||||| ||||| || |||||||||| ||||||||| ||||||||  ||||||
Sbjct: 2590 tatatgcatcaagcaccatacgaaggtgccttcgttcgtcaaagtggtagccactagata 2531

                                                                        
Query: 514  acattttgcgaaatgcatactcgaattcattccacttttttgcttcggcacaagcgtcca 573
            |||||||||||||||||||||| || ||||||||| | |||||||| ||||| || ||||
Sbjct: 2530 acattttgcgaaatgcatactcaaaatcattccacctctttgcttcagcacaggcctcca 2471

                                           
Query: 574  agaaagtattgaaagtaaacttgtctgcaat 604
             |||| |||||||||||||||||||||||||
Sbjct: 2470 tgaaaatattgaaagtaaacttgtctgcaat 2440
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 4e-42
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                            
Query: 442      ccttcccgctcctataggcatcaagtaccatgcgtaggtgccttctttcgtcaaaatggt 501
                |||||||| ||||||| |||||||| ||||| || |||||||||| ||||||||| ||||
Sbjct: 27723827 ccttcccgttcctatatgcatcaagcaccatacgaaggtgccttcgttcgtcaaagtggt 27723768

                                                                            
Query: 502      agccgttagataacattttgcgaaatgcatactcgaattcattccacttttttgcttcgg 561
                ||||  |||||||||||||||||||||||||||| || ||||||||| | |||||||| |
Sbjct: 27723767 agccactagataacattttgcgaaatgcatactcaaaatcattccacctctttgcttcag 27723708

                                                           
Query: 562      cacaagcgtccaagaaagtattgaaagtaaacttgtctgcaat 604
                |||| || |||| |||| |||||||||||||||||||||||||
Sbjct: 27723707 cacaggcctccatgaaaatattgaaagtaaacttgtctgcaat 27723665



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Minus

                                                                            
Query: 274      tggaggaaacgttgcctatcttgctctcctggaagctgctgatgcaggagagtgctgccg 333
                |||| ||||| |||| ||||||||||||||| ||| |  |||||||||| |  || ||| 
Sbjct: 27724523 tggatgaaacattgcgtatcttgctctcctgaaaggtattgatgcaggacatcgccgcca 27724464

                                                                
Query: 334      tcgtatggccttgtctcagttttaggcagaatctctccattatcatgg 381
                  || |  |||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 27724463 ctgtgtccccttgtctcagtttcaggcaaaatctttccattatcatgg 27724416
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>dbj|AP003374.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1117_G01
          Length = 125454

 Score =  180 bits (91), Expect = 4e-42
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                         
Query: 442   ccttcccgctcctataggcatcaagtaccatgcgtaggtgccttctttcgtcaaaatggt 501
             |||||||| ||||||| |||||||| ||||| || |||||||||| ||||||||| ||||
Sbjct: 15882 ccttcccgttcctatatgcatcaagcaccatacgaaggtgccttcgttcgtcaaagtggt 15823

                                                                         
Query: 502   agccgttagataacattttgcgaaatgcatactcgaattcattccacttttttgcttcgg 561
             ||||  |||||||||||||||||||||||||||| || ||||||||| | |||||||| |
Sbjct: 15822 agccactagataacattttgcgaaatgcatactcaaaatcattccacctctttgcttcag 15763

                                                        
Query: 562   cacaagcgtccaagaaagtattgaaagtaaacttgtctgcaat 604
             |||| || |||| |||| |||||||||||||||||||||||||
Sbjct: 15762 cacaggcctccatgaaaatattgaaagtaaacttgtctgcaat 15720



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Minus

                                                                         
Query: 274   tggaggaaacgttgcctatcttgctctcctggaagctgctgatgcaggagagtgctgccg 333
             |||| ||||| |||| ||||||||||||||| ||| |  |||||||||| |  || ||| 
Sbjct: 16578 tggatgaaacattgcgtatcttgctctcctgaaaggtattgatgcaggacatcgccgcca 16519

                                                             
Query: 334   tcgtatggccttgtctcagttttaggcagaatctctccattatcatgg 381
               || |  |||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 16518 ctgtgtccccttgtctcagtttcaggcaaaatctttccattatcatgg 16471
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>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0485G01
          Length = 167203

 Score =  180 bits (91), Expect = 4e-42
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                          
Query: 442    ccttcccgctcctataggcatcaagtaccatgcgtaggtgccttctttcgtcaaaatggt 501
              |||||||| ||||||| |||||||| ||||| || |||||||||| ||||||||| ||||
Sbjct: 132393 ccttcccgttcctatatgcatcaagcaccatacgaaggtgccttcgttcgtcaaagtggt 132334

                                                                          
Query: 502    agccgttagataacattttgcgaaatgcatactcgaattcattccacttttttgcttcgg 561
              ||||  |||||||||||||||||||||||||||| || ||||||||| | |||||||| |
Sbjct: 132333 agccactagataacattttgcgaaatgcatactcaaaatcattccacctctttgcttcag 132274

                                                         
Query: 562    cacaagcgtccaagaaagtattgaaagtaaacttgtctgcaat 604
              |||| || |||| |||| |||||||||||||||||||||||||
Sbjct: 132273 cacaggcctccatgaaaatattgaaagtaaacttgtctgcaat 132231



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Minus

                                                                          
Query: 274    tggaggaaacgttgcctatcttgctctcctggaagctgctgatgcaggagagtgctgccg 333
              |||| ||||| |||| ||||||||||||||| ||| |  |||||||||| |  || ||| 
Sbjct: 133089 tggatgaaacattgcgtatcttgctctcctgaaaggtattgatgcaggacatcgccgcca 133030

                                                              
Query: 334    tcgtatggccttgtctcagttttaggcagaatctctccattatcatgg 381
                || |  |||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 133029 ctgtgtccccttgtctcagtttcaggcaaaatctttccattatcatgg 132982
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>gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, complete sequence
          Length = 188504

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 427    cttccagcagctgctccttcccgctc 452
              ||||||| ||||||||||||||||||
Sbjct: 175856 cttccagaagctgctccttcccgctc 175831
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>dbj|AB090813.1| Anopheles gambiae retrotransposon RTAg4 DNA, complete sequence
          Length = 7072

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 399  ccattgcgacacaggtagtccc 420
            ||||||||||||||||||||||
Sbjct: 6118 ccattgcgacacaggtagtccc 6097
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>emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chromosome 15, complete
             sequence
          Length = 217225

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 427   cttccagcagctgctccttcccgctc 452
             ||||||| ||||||||||||||||||
Sbjct: 31018 cttccagaagctgctccttcccgctc 30993
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>gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, complete sequence
          Length = 212613

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 454  tataggcatcaagtaccatgc 474
            |||||||||||||||||||||
Sbjct: 3072 tataggcatcaagtaccatgc 3092
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>gb|AC116507.9| Mus musculus chromosome 19, clone RP24-309C17, complete sequence
          Length = 168364

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   gtcttccagcagctgctcctt 445
             |||||||||||||||||||||
Sbjct: 75803 gtcttccagcagctgctcctt 75823
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>gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosome 3, complete sequence
          Length = 192136

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 454   tataggcatcaagtaccatgc 474
             |||||||||||||||||||||
Sbjct: 99166 tataggcatcaagtaccatgc 99146
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>gb|AC108950.4| Mus musculus BAC clone RP23-458E21 from chromosome 9, complete sequence
          Length = 181083

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   caccagaaccaccaaggaact 129
             |||||||||||||||||||||
Sbjct: 65393 caccagaaccaccaaggaact 65373
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>gb|AC079244.29| Mus musculus strain C57BL/6J chromosome 9 clone rp23-343k17, complete
              sequence
          Length = 223861

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 109    caccagaaccaccaaggaact 129
              |||||||||||||||||||||
Sbjct: 209221 caccagaaccaccaaggaact 209201
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>gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone rp23-426k2, complete
              sequence
          Length = 213098

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 109    caccagaaccaccaaggaact 129
              |||||||||||||||||||||
Sbjct: 209103 caccagaaccaccaaggaact 209123
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>dbj|AP001591.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-838I13, complete
              sequence
          Length = 178982

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 424    tgtcttccagcagctgctcct 444
              |||||||||||||||||||||
Sbjct: 173742 tgtcttccagcagctgctcct 173762
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>emb|AL844490.4| Mouse DNA sequence from clone RP23-98P13 on chromosome X, complete
             sequence
          Length = 108612

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 415   agtcccatatgtcttccagca 435
             |||||||||||||||||||||
Sbjct: 83789 agtcccatatgtcttccagca 83809
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>dbj|AP000753.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-697H9, complete
             sequence
          Length = 184057

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   tgtcttccagcagctgctcct 444
             |||||||||||||||||||||
Sbjct: 76432 tgtcttccagcagctgctcct 76452
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>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence
          Length = 222682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 44     gataggaggctaacatggcggtca 67
              |||||||||||||||| |||||||
Sbjct: 150567 gataggaggctaacatagcggtca 150544
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 210     agctcggcgacgctctcctcctcg 233
               |||||||||| |||||||||||||
Sbjct: 1303638 agctcggcgaagctctcctcctcg 1303615
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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    catatgtcttccagcagctg 439
              ||||||||||||||||||||
Sbjct: 480305 catatgtcttccagcagctg 480324
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>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
           in-between-RING-finger ubiquitin-associated domain
           protein) (LOC480259), mRNA
          Length = 3490

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 tgtcttccagcagctgctcc 443
           ||||||||||||||||||||
Sbjct: 715 tgtcttccagcagctgctcc 696
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>ref|XM_500587.1| Yarrowia lipolytica CLIB122, YALI0B06919g predicted mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 ggttcagaagactcgaccac 269
           ||||||||||||||||||||
Sbjct: 437 ggttcagaagactcgaccac 418
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>emb|AL078633.32|HS1005F21 Human DNA sequence from clone RP5-1005F21 on chromosome 20 Contains the
             PSMA7 gene for proteasome (prosome, macropain) subunit
             alpha type 7, the HRH3 gene for histamine receptor H3, the
             SS18L1 gene for synovial sarcoma translocation gene on
             chromosome 18-like 1, the GTPBP5 gene for GTP binding
             protein 5 (putative), the 3' end of the C20orf40 gene for
             a novel protein similar to Pleurodeles waltlii RAP55
             protein and seven CpG islands, complete sequence
          Length = 100976

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ctccctggccttgagaggcc 193
             ||||||||||||||||||||
Sbjct: 30569 ctccctggccttgagaggcc 30588
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>emb|AL033381.2|HS856G1 Human DNA sequence from clone RP5-856G1 on chromosome 6p24.1-25.3,
             complete sequence
          Length = 151795

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 363   aatctctccattatcatggcagcc 386
             |||||||||||||| |||||||||
Sbjct: 30831 aatctctccattatgatggcagcc 30808
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>emb|AJ278954.1|SLO278954 Spraguea lophii partial rpb1 gene for RNA polymerase II largest
           subunit
          Length = 1755

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 aagaaagtattgaaagtaaa 592
           ||||||||||||||||||||
Sbjct: 707 aagaaagtattgaaagtaaa 726
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>gb|AF462673.1| Homo sapiens isolate PELIZ immunoglobulin light chain variable
           region mRNA, partial cds
          Length = 376

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ctctcctggaagctgctgat 316
           ||||||||||||||||||||
Sbjct: 132 ctctcctggaagctgctgat 113
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>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence
          Length = 208026

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 573   aagaaagtattgaaagtaaa 592
             ||||||||||||||||||||
Sbjct: 24088 aagaaagtattgaaagtaaa 24107
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>gb|DQ427831.1| Sorghum propinquum locus pHER1D05 genomic sequence
          Length = 591

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427830.1| Sorghum bicolor voucher PI585454 locus pHER1D05 genomic sequence
          Length = 590

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427829.1| Sorghum bicolor voucher PI267539 locus pHER1D05 genomic sequence
          Length = 590

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427828.1| Sorghum bicolor voucher PI267408 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427827.1| Sorghum bicolor voucher PI221607 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427826.1| Sorghum bicolor voucher PI152702 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427825.1| Sorghum bicolor voucher NSL92371 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427824.1| Sorghum bicolor voucher NSL87666 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427823.1| Sorghum bicolor voucher NSL77217 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427822.1| Sorghum bicolor voucher NSL77034 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427821.1| Sorghum bicolor voucher NSL56174 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427820.1| Sorghum bicolor voucher NSL56003 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427819.1| Sorghum bicolor voucher NSL55243 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427818.1| Sorghum bicolor voucher NSL51365 locus pHER1D05 genomic sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427817.1| Sorghum bicolor voucher NSL51030 locus pHER1D05 genomic sequence
          Length = 590

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427816.1| Sorghum bicolor voucher NSL50875 locus pHER1D05 genomic sequence
          Length = 588

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|DQ427815.1| Sorghum bicolor voucher BTx623 locus pHER1D05 genomic sequence
          Length = 588

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ccagcagctgctccttcccg 449
           ||||||||||||||||||||
Sbjct: 178 ccagcagctgctccttcccg 159
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>gb|AC098873.3| Homo sapiens BAC clone RP11-793H20 from 4, complete sequence
          Length = 119147

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 539    ttcattccacttttttgctt 558
              ||||||||||||||||||||
Sbjct: 113278 ttcattccacttttttgctt 113259
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>gb|AC097468.3| Homo sapiens BAC clone RP11-33O4 from 2, complete sequence
          Length = 169741

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 66     caagaattacagaaaggcacccat 89
              ||||||||| ||||||||||||||
Sbjct: 108467 caagaattagagaaaggcacccat 108490
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>gb|AC003014.1|AC003014 Human PAC clone RP1-290B4 from Xq23, complete sequence
          Length = 76169

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 512   taacattttgcgaaatgcatactc 535
             ||||||||||| ||||||||||||
Sbjct: 45712 taacattttgcaaaatgcatactc 45689
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>emb|CR391915.9| Zebrafish DNA sequence from clone CH211-130O18 in linkage group 19,
             complete sequence
          Length = 77634

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 540   tcattccacttttttgcttc 559
             ||||||||||||||||||||
Sbjct: 45152 tcattccacttttttgcttc 45171
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>emb|AL122013.5|CNS01DSU Human chromosome 14 DNA sequence BAC R-204K16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173010

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    catatgtcttccagcagctg 439
              ||||||||||||||||||||
Sbjct: 161024 catatgtcttccagcagctg 161005
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>emb|CT025606.10| Mouse DNA sequence from clone RP24-120D14 on chromosome 12, complete
             sequence
          Length = 164251

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   aagaaagtattgaaagtaaa 592
             ||||||||||||||||||||
Sbjct: 39878 aagaaagtattgaaagtaaa 39859
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    ggttcagaagactcgaccac 269
              ||||||||||||||||||||
Sbjct: 923460 ggttcagaagactcgaccac 923441
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>emb|AL732572.10| Mouse DNA sequence from clone RP23-32C16 on chromosome 2, complete
              sequence
          Length = 213704

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 306    aagctgctgatgcaggagagtgct 329
              |||||| |||||||||||||||||
Sbjct: 196119 aagctgatgatgcaggagagtgct 196142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,650,629
Number of Sequences: 3902068
Number of extensions: 4650629
Number of successful extensions: 86548
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86381
Number of HSP's gapped (non-prelim): 166
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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