ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62a06 |
|---|---|
| Clone Library Name | barley_pub |
>FENR_MESCR (P41343) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 365 Score = 110 bits (275), Expect = 9e-25 Identities = 50/55 (90%), Positives = 53/55 (96%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 E+LKKDNTYVYMCGLKGMEKGIDDIMV LAA+DGI+W DYKKQLKKAEQWNVEVY Sbjct: 311 ELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAEDGIDWFDYKKQLKKAEQWNVEVY 365
>FENR1_ORYSA (P41344) Ferredoxin--NADP reductase, leaf isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 362 Score = 108 bits (269), Expect = 4e-24 Identities = 49/55 (89%), Positives = 52/55 (94%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 E+LKKD+TYVYMCGLKGMEKGIDDIMV LAAKDGI+W DYKKQLKK EQWNVEVY Sbjct: 308 ELLKKDHTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWADYKKQLKKGEQWNVEVY 362
>FENR1_PEA (P10933) Ferredoxin--NADP reductase, leaf isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 360 Score = 106 bits (264), Expect = 2e-23 Identities = 47/55 (85%), Positives = 53/55 (96%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 E+LKKDNT+VYMCGLKGMEKGIDDIMV LAAKDGI+W++YK+ LKKAEQWNVEVY Sbjct: 306 ELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 360
>FENR_SPIOL (P00455) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 369 Score = 105 bits (262), Expect = 3e-23 Identities = 47/55 (85%), Positives = 52/55 (94%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 EMLKKDNTY YMCGLKGMEKGIDDIMV LAA +GI+W++YK+QLKKAEQWNVEVY Sbjct: 315 EMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY 369
>FENR_VICFA (P41346) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 363 Score = 101 bits (252), Expect = 4e-22 Identities = 44/55 (80%), Positives = 51/55 (92%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 E+LKKDNT+VYMCGLKGMEKGIDDIMV + KDGI+W++YK+ LKKAEQWNVEVY Sbjct: 309 ELLKKDNTFVYMCGLKGMEKGIDDIMVSIRPKDGIDWIEYKRTLKKAEQWNVEVY 363
>FENR1_TOBAC (O04977) Ferredoxin--NADP reductase, leaf-type isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 362 Score = 95.5 bits (236), Expect = 3e-20 Identities = 42/54 (77%), Positives = 49/54 (90%) Frame = -1 Query: 342 MLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 +L+KDNT++YMCGLKGME+GID+IM LA +DGI W DYKKQLKKAEQWNVEVY Sbjct: 309 LLQKDNTFIYMCGLKGMEQGIDEIMSALAERDGIVWADYKKQLKKAEQWNVEVY 362
>FENR_ANAVT (Q44549) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 440 Score = 71.2 bits (173), Expect = 6e-13 Identities = 28/55 (50%), Positives = 42/55 (76%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 +++K + T+ Y+CGL+GME+GID + AAK+G+ W DY+K LKKA +W+VE Y Sbjct: 386 QLIKNEKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
>FENR_ANASP (P58558) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 440 Score = 71.2 bits (173), Expect = 6e-13 Identities = 28/55 (50%), Positives = 42/55 (76%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 +++K + T+ Y+CGL+GME+GID + AAK+G+ W DY+K LKKA +W+VE Y Sbjct: 386 QLIKNEKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
>FENR_ANASO (P21890) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 440 Score = 70.5 bits (171), Expect = 1e-12 Identities = 28/55 (50%), Positives = 41/55 (74%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 +++K T+ Y+CGL+GME+GID + AAK+G+ W DY+K LKKA +W+VE Y Sbjct: 386 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
>FENR_SPISP (P00454) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 294 Score = 69.3 bits (168), Expect = 2e-12 Identities = 29/55 (52%), Positives = 41/55 (74%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 E+++K NT+ Y+CGLKGME GID+ M A K ++W DY+K+LKK +W+VE Y Sbjct: 240 ELIQKPNTHTYICGLKGMEGGIDEGMSAAAGKFDVDWSDYQKELKKKHRWHVETY 294
>FENR_SYNP2 (P31973) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 402 Score = 67.4 bits (163), Expect = 8e-12 Identities = 28/55 (50%), Positives = 40/55 (72%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 EM++K NT+VYMCGLKGM+ ID+ A K G+NW + ++ +KK +W+VEVY Sbjct: 348 EMIQKPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHVEVY 402
>FENR_SYNEL (Q93RE3) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 386 Score = 66.6 bits (161), Expect = 1e-11 Identities = 30/56 (53%), Positives = 42/56 (75%), Gaps = 1/56 (1%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDY-KKQLKKAEQWNVEVY 181 ++L+K NT+VYMCGL+GME GID+ M AAK+G +W ++ K LKK +W+VE Y Sbjct: 331 QLLQKKNTHVYMCGLRGMEPGIDEAMTAAAAKNGADWQEFLKGTLKKEGRWHVETY 386
>FENR_CYAPA (Q00598) Ferredoxin--NADP reductase, cyanelle precursor (EC| 1.18.1.2) (FNR) Length = 363 Score = 63.9 bits (154), Expect = 9e-11 Identities = 28/54 (51%), Positives = 37/54 (68%) Frame = -1 Query: 342 MLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 M++K NT+VYMCGL+GME GI M D+A +G W K LKK ++W+VE Y Sbjct: 310 MIQKPNTFVYMCGLRGMEDGIQQCMEDIAKANGTTWDAVVKGLKKEKRWHVETY 363
>FENR_SYNY3 (Q55318) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 413 Score = 60.8 bits (146), Expect = 8e-10 Identities = 23/54 (42%), Positives = 37/54 (68%) Frame = -1 Query: 342 MLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 +++ T+ YMCGLKGME GID+ LA ++G W +++++KK +W+VE Y Sbjct: 360 LMQNPKTHTYMCGLKGMEPGIDEAFTALAEQNGKEWTTFQREMKKEHRWHVETY 413
>FENR2_TOBAC (O04397) Ferredoxin--NADP reductase, root-type isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 375 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/53 (45%), Positives = 33/53 (62%) Frame = -1 Query: 339 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 L + ++Y CGLKGM GI D + +A + G +W QLKK +QW+VEVY Sbjct: 323 LLDEGAHIYFCGLKGMMPGIQDTLKRVAERRGESWEQKLSQLKKNKQWHVEVY 375
>FENR2_ORYSA (P41345) Ferredoxin--NADP reductase, root isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 378 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = -1 Query: 321 YVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 ++Y CGLKGM GI D + +A + G +W QLKK +QW+VEVY Sbjct: 332 HIYFCGLKGMMPGIQDTLKKVAEQRGESWEQKLSQLKKNKQWHVEVY 378
>FENR2_PEA (Q41014) Ferredoxin--NADP reductase, root isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 377 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/53 (43%), Positives = 34/53 (64%) Frame = -1 Query: 339 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 L + ++Y CGL+GM GI + + +A K G +W + QLKK +QW+VEVY Sbjct: 325 LLDNGAHIYFCGLRGMMPGIQETLKRVAEKRGESWEEKLSQLKKNKQWHVEVY 377
>FENR3_ORYSA (O23877) Ferredoxin--NADP reductase, embryo isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 378 Score = 52.0 bits (123), Expect = 4e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = -1 Query: 321 YVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 ++Y CGLKGM GI D + +A + G +W QLKK +QW+VEVY Sbjct: 332 HIYFCGLKGMMPGIQDTLKRVAEQRGESWEQKLSQLKKNKQWHVEVY 378
>FENR_CHLRE (P53991) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 354 Score = 51.2 bits (121), Expect = 6e-07 Identities = 22/53 (41%), Positives = 35/53 (66%) Frame = -1 Query: 339 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 181 L + ++Y CGLKGM GI D++ +A + G+N+ ++ + LK QW+VEVY Sbjct: 302 LLDNGAHMYFCGLKGMMPGIQDMLERVAKEKGLNYEEWVEGLKHKNQWHVEVY 354
>Y013_NPVAC (P41423) Hypothetical 38.7 kDa protein in PK1-LEF1 intergenic| region Length = 327 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 261 LAAKDGINWLDYKKQLKKAEQWNVEVY*SSSSCHCH 154 +AA+D N DYKK A+QW+ V S C+ H Sbjct: 20 IAAEDRFNADDYKKYHINAQQWSHIVKWDSFKCNTH 55
>CYSJ_ZYMMO (Q5NRM1) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 606 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -1 Query: 339 LKKDNTYVYMCG-LKGMEKGIDDIMVDLAAKDG 244 +K+D Y+Y+CG M K +D ++D+ ++G Sbjct: 549 IKEDGAYLYVCGDATHMAKDVDKALIDIIRQEG 581
>FENR_IMPCY (P84210) Ferredoxin--NADP reductase, chloroplast (EC 1.18.1.2)| (FNR) (Fragments) Length = 37 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -1 Query: 294 MEKGIDDIMVDLAAK 250 + +GIDDIMVDLAAK Sbjct: 23 VSRGIDDIMVDLAAK 37
>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor| Length = 2809 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 174 SSSCHCHGRTCMLMFFPPSFHFYSRWILCKAQASAIYTPCI 52 S SC C PP FHF+ +CK + +PC+ Sbjct: 746 SYSCSC----------PPGFHFWQDTEICKDVDECLSSPCV 776
>YS42_CAEEL (Q09371) Hypothetical protein ZK177.2| Length = 296 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 324 TYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKK 208 T V C KG K ++ I+ + +K + W D K Q+KK Sbjct: 23 TTVINCVSKGRHKDVNAIVRETESKKIVPWSDAKVQIKK 61
>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P| Length = 202 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/19 (42%), Positives = 16/19 (84%) Frame = -1 Query: 315 YMCGLKGMEKGIDDIMVDL 259 Y+CGL+ +E+GI+ ++D+ Sbjct: 91 YLCGLRALERGIERAVIDI 109
>SRE27_CAEEL (O62488) Serpentine receptor class epsilon-27 (Protein sre-27)| Length = 364 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -3 Query: 187 GLLIIIIVSLP-WKDMHANVFPT*FSFLLQM 98 G+ + + S+P WK + N FP+ F FL+++ Sbjct: 298 GICTVAMYSIPAWKKRYKNAFPSIFCFLMRL 328
>THSA_THEAC (P48424) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 545 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -1 Query: 345 EMLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGI 241 E +KK V +C +KGIDD+ AK+GI Sbjct: 278 EKIKKSGANVVLC-----QKGIDDVAQHYLAKEGI 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,020,863 Number of Sequences: 219361 Number of extensions: 624090 Number of successful extensions: 1739 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1716 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1738 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
