ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479825.1| Oryza sativa (japonica cultivar-group), mRNA 90 1e-14
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
3dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
5dbj|AK103562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
6gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4... 42 2.3
7gb|AC087376.5| Homo sapiens chromosome 11, clone RP11-230O19, co... 42 2.3
8gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 42 2.3
9gb|AC146980.9| Mus musculus chromosome 3, clone RP24-97N14, comp... 40 9.2
10gb|BC073367.1| Xenopus laevis MGC80788 protein, mRNA (cDNA clone... 40 9.2
11gb|AC126408.6| Mus musculus chromosome 13, clone RP23-216P14, co... 40 9.2
12gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, co... 40 9.2
13gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence 40 9.2
14gb|AC021055.18| Homo sapiens 3 BAC RP11-139K4 (Roswell Park Canc... 40 9.2
15gb|AC098648.2| Homo sapiens chromosome 3 clone RP11-240N7, compl... 40 9.2
16emb|AL831716.7| Mouse DNA sequence from clone RP23-280E8 on chro... 40 9.2
17emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chr... 40 9.2
18emb|BX005231.8| Mouse DNA sequence from clone RP23-392C6 on chro... 40 9.2
19emb|AL163512.35| Mouse DNA sequence from clone RP21-468E12 on ch... 40 9.2 
>ref|XM_479825.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2841

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  ttcgtcgacctttggtatgtgctctccagctttcgaggcgacattccctgtagtggatgc 526
            |||||| ||||||||| ||||| ||||||||||  |||   |||| |||| |||||||||
Sbjct: 2415 ttcgtcaacctttggtgtgtgccctccagctttgaaggaaccatttcctggagtggatgc 2356

                                                         
Query: 527  ttcaggaatgacagagatcttctggtagctcaggatcctcgactc 571
            |||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct: 2355 ttcaggtatgactgaaatcttctgatagctcaagatcctcgactc 2311



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 301  ctttcgttctgcagtctggtctgatcttgcagaaacagcagctgaagagccccttgcgag 360
            |||||||  |||||||||||||||||||||||||||||||  |||| || ||| ||||||
Sbjct: 2551 ctttcgtcttgcagtctggtctgatcttgcagaaacagcatttgaacagtcccctgcgag 2492

              
Query: 361  gc 362
            ||
Sbjct: 2491 gc 2490
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                           
Query: 467     ttcgtcgacctttggtatgtgctctccagctttcgaggcgacattccctgtagtggatgc 526
               |||||| ||||||||| ||||| ||||||||||  |||   |||| |||| |||||||||
Sbjct: 1109009 ttcgtcaacctttggtgtgtgccctccagctttgaaggaaccatttcctggagtggatgc 1108950

                                                            
Query: 527     ttcaggaatgacagagatcttctggtagctcaggatcctcgactc 571
               |||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct: 1108949 ttcaggtatgactgaaatcttctgatagctcaagatcctcgactc 1108905



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 301     ctttcgttctgcagtctggtctgatcttgcagaaacagcagctgaagagccccttgcgag 360
               |||||||  |||||||||||||||||||||||||||||||  |||| || ||| ||||||
Sbjct: 1109145 ctttcgtcttgcagtctggtctgatcttgcagaaacagcatttgaacagtcccctgcgag 1109086

                 
Query: 361     gc 362
               ||
Sbjct: 1109085 gc 1109084
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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                         
Query: 467   ttcgtcgacctttggtatgtgctctccagctttcgaggcgacattccctgtagtggatgc 526
             |||||| ||||||||| ||||| ||||||||||  |||   |||| |||| |||||||||
Sbjct: 22246 ttcgtcaacctttggtgtgtgccctccagctttgaaggaaccatttcctggagtggatgc 22187

                                                          
Query: 527   ttcaggaatgacagagatcttctggtagctcaggatcctcgactc 571
             |||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct: 22186 ttcaggtatgactgaaatcttctgatagctcaagatcctcgactc 22142



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 301   ctttcgttctgcagtctggtctgatcttgcagaaacagcagctgaagagccccttgcgag 360
             |||||||  |||||||||||||||||||||||||||||||  |||| || ||| ||||||
Sbjct: 22382 ctttcgtcttgcagtctggtctgatcttgcagaaacagcatttgaacagtcccctgcgag 22323

               
Query: 361   gc 362
             ||
Sbjct: 22322 gc 22321
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>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_B05
          Length = 144799

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                          
Query: 467    ttcgtcgacctttggtatgtgctctccagctttcgaggcgacattccctgtagtggatgc 526
              |||||| ||||||||| ||||| ||||||||||  |||   |||| |||| |||||||||
Sbjct: 137536 ttcgtcaacctttggtgtgtgccctccagctttgaaggaaccatttcctggagtggatgc 137477

                                                           
Query: 527    ttcaggaatgacagagatcttctggtagctcaggatcctcgactc 571
              |||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct: 137476 ttcaggtatgactgaaatcttctgatagctcaagatcctcgactc 137432



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 301    ctttcgttctgcagtctggtctgatcttgcagaaacagcagctgaagagccccttgcgag 360
              |||||||  |||||||||||||||||||||||||||||||  |||| || ||| ||||||
Sbjct: 137672 ctttcgtcttgcagtctggtctgatcttgcagaaacagcatttgaacagtcccctgcgag 137613

                
Query: 361    gc 362
              ||
Sbjct: 137612 gc 137611
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>dbj|AK103562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132K03, full
            insert sequence
          Length = 2839

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  ttcgtcgacctttggtatgtgctctccagctttcgaggcgacattccctgtagtggatgc 526
            |||||| ||||||||| ||||| ||||||||||  |||   |||| |||| |||||||||
Sbjct: 2413 ttcgtcaacctttggtgtgtgccctccagctttgaaggaaccatttcctggagtggatgc 2354

                                                         
Query: 527  ttcaggaatgacagagatcttctggtagctcaggatcctcgactc 571
            |||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct: 2353 ttcaggtatgactgaaatcttctgatagctcaagatcctcgactc 2309



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 301  ctttcgttctgcagtctggtctgatcttgcagaaacagcagctgaagagccccttgcgag 360
            |||||||  |||||||||||||||||||||||||||||||  |||| || ||| ||||||
Sbjct: 2549 ctttcgtcttgcagtctggtctgatcttgcagaaacagcatttgaacagtcccctgcgag 2490

              
Query: 361  gc 362
            ||
Sbjct: 2489 gc 2488
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>gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4g23, complete sequence
          Length = 103199

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   aatatgcttgctagttgctac 257
             |||||||||||||||||||||
Sbjct: 22724 aatatgcttgctagttgctac 22744
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>gb|AC087376.5| Homo sapiens chromosome 11, clone RP11-230O19, complete sequence
          Length = 164441

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 517    tagtggatgcttcaggaatga 537
              |||||||||||||||||||||
Sbjct: 135089 tagtggatgcttcaggaatga 135109
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 324    atcttgcagaaacagcagctg 344
              |||||||||||||||||||||
Sbjct: 335243 atcttgcagaaacagcagctg 335223
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>gb|AC146980.9| Mus musculus chromosome 3, clone RP24-97N14, complete sequence
          Length = 161054

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    gaacctcagagaaacagcca 446
              ||||||||||||||||||||
Sbjct: 142082 gaacctcagagaaacagcca 142101
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>gb|BC073367.1| Xenopus laevis MGC80788 protein, mRNA (cDNA clone MGC:80788
           IMAGE:5513391), complete cds
          Length = 2655

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 atcttgcagaaacagcagct 343
           ||||||||||||||||||||
Sbjct: 968 atcttgcagaaacagcagct 987
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>gb|AC126408.6| Mus musculus chromosome 13, clone RP23-216P14, complete sequence
          Length = 238967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 470   gtcgacctttggtatgtgctctcc 493
             ||||||||||| ||||||||||||
Sbjct: 49009 gtcgacctttgatatgtgctctcc 48986
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>gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, complete sequence
          Length = 233298

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    cttgcagaaacagcagctga 345
              ||||||||||||||||||||
Sbjct: 167749 cttgcagaaacagcagctga 167768
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>gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence
          Length = 80906

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    agagtcagactcaggagcgggctg 111
             ||||||||||||||||| ||||||
Sbjct: 66626 agagtcagactcaggagagggctg 66649
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>gb|AC021055.18| Homo sapiens 3 BAC RP11-139K4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156754

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   aggaatgacagagatcttct 549
             ||||||||||||||||||||
Sbjct: 83659 aggaatgacagagatcttct 83678
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>gb|AC098648.2| Homo sapiens chromosome 3 clone RP11-240N7, complete sequence
          Length = 151924

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   ggtagaacctcagagaaaca 442
             ||||||||||||||||||||
Sbjct: 67235 ggtagaacctcagagaaaca 67254
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>emb|AL831716.7| Mouse DNA sequence from clone RP23-280E8 on chromosome X, complete
             sequence
          Length = 166068

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   ttgctacccatggaacacct 270
             ||||||||||||||||||||
Sbjct: 74991 ttgctacccatggaacacct 75010
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>emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chromosome 2, complete
             sequence
          Length = 178517

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   gacattccctgtagtggatg 525
             ||||||||||||||||||||
Sbjct: 67766 gacattccctgtagtggatg 67785
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>emb|BX005231.8| Mouse DNA sequence from clone RP23-392C6 on chromosome X, complete
             sequence
          Length = 129970

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   cagaaacagcagctgaagag 349
             ||||||||||||||||||||
Sbjct: 22684 cagaaacagcagctgaagag 22703
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>emb|AL163512.35| Mouse DNA sequence from clone RP21-468E12 on chromosome X, complete
             sequence
          Length = 134334

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ttgctacccatggaacacct 270
             ||||||||||||||||||||
Sbjct: 98914 ttgctacccatggaacacct 98895


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,873,784
Number of Sequences: 3902068
Number of extensions: 4873784
Number of successful extensions: 115185
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115130
Number of HSP's gapped (non-prelim): 55
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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