Clone Name | rbah62a03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK068172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129D15, full insert sequence Length = 2276 Score = 168 bits (85), Expect = 7e-39 Identities = 137/156 (87%) Strand = Plus / Minus Query: 164 cagatcttgctggtattcatttaccctgtccgacaactcaggatcccttgaggcaagcat 223 |||||| |||||||||||| || || ||||| |||||||||||| |||||||| ||||| Sbjct: 1942 cagatcatgctggtattcagttgccttgtcccccaactcaggatctcttgaggccagcat 1883 Query: 224 ccgaactgncaacaagcctgcattttcagcacttccaattgcaacagtnncancaggaat 283 || ||||| ||| || ||||||||||| ||| |||||||||||||||| || ||||||| Sbjct: 1882 cctaactgccaataaacctgcattttccgcatttccaattgcaacagtagcaacaggaat 1823 Query: 284 acctttcggcatctgcacaatanataggagggaatc 319 ||||||||||||||| |||||| ||||||||||||| Sbjct: 1822 acctttcggcatctggacaatagataggagggaatc 1787
>ref|NM_188276.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 151 bits (76), Expect = 2e-33 Identities = 110/123 (89%) Strand = Plus / Minus Query: 197 caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256 |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| | Sbjct: 1746 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 1687 Query: 257 tccaattgcaacagtnncancaggaatacctttcggcatctgcacaatanataggaggga 316 ||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||| Sbjct: 1686 tccaattgcaacagtagcaacaggaatacctttcggcatctggacaatagataggaggga 1627 Query: 317 atc 319 ||| Sbjct: 1626 atc 1624
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 4e-25 Identities = 91/102 (89%) Strand = Plus / Minus Query: 197 caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256 |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| | Sbjct: 5410770 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 5410711 Query: 257 tccaattgcaacagtnncancaggaatacctttcggcatctg 298 ||||||||||||||| || |||||||||||||||||||||| Sbjct: 5410710 tccaattgcaacagtagcaacaggaatacctttcggcatctg 5410669 Score = 107 bits (54), Expect = 2e-20 Identities = 89/102 (87%) Strand = Plus / Minus Query: 197 caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256 |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| | Sbjct: 5418290 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttctgcatt 5418231 Query: 257 tccaattgcaacagtnncancaggaatacctttcggcatctg 298 ||||||||||||||| || ||||||||| ||||| |||||| Sbjct: 5418230 tccaattgcaacagtagcaacaggaatacttttcgacatctg 5418189
>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1046G12 Length = 163533 Score = 123 bits (62), Expect = 4e-25 Identities = 91/102 (89%) Strand = Plus / Minus Query: 197 caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256 |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| | Sbjct: 162114 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 162055 Query: 257 tccaattgcaacagtnncancaggaatacctttcggcatctg 298 ||||||||||||||| || |||||||||||||||||||||| Sbjct: 162054 tccaattgcaacagtagcaacaggaatacctttcggcatctg 162013
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 123 bits (62), Expect = 4e-25 Identities = 91/102 (89%) Strand = Plus / Minus Query: 197 caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256 |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| | Sbjct: 7610 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 7551 Query: 257 tccaattgcaacagtnncancaggaatacctttcggcatctg 298 ||||||||||||||| || |||||||||||||||||||||| Sbjct: 7550 tccaattgcaacagtagcaacaggaatacctttcggcatctg 7509 Score = 107 bits (54), Expect = 2e-20 Identities = 89/102 (87%) Strand = Plus / Minus Query: 197 caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256 |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| | Sbjct: 15130 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttctgcatt 15071 Query: 257 tccaattgcaacagtnncancaggaatacctttcggcatctg 298 ||||||||||||||| || ||||||||| ||||| |||||| Sbjct: 15070 tccaattgcaacagtagcaacaggaatacttttcgacatctg 15029
>gb|AF457972.1| Zea mays clone bms1.pk0021.g7, mRNA sequence Length = 585 Score = 81.8 bits (41), Expect = 1e-12 Identities = 111/136 (81%) Strand = Plus / Plus Query: 184 ttaccctgtccgacaactcaggatcccttgaggcaagcatccgaactgncaacaagcctg 243 ||||||||||| | ||||||||| |||| || || |||| | ||| || ||| |||| Sbjct: 274 ttaccctgtcctggagctcaggatctcttgcagccagaatcctagctgccagcaaacctg 333 Query: 244 cattttcagcacttccaattgcaacagtnncancaggaatacctttcggcatctgcacaa 303 ||||||| ||| | || || |||||||| || ||||||||||||| ||||| ||||||| Sbjct: 334 cattttctgcattcccgatagcaacagtcgcaacaggaataccttttggcatttgcacaa 393 Query: 304 tanataggagggaatc 319 || ||||||||||||| Sbjct: 394 tagataggagggaatc 409
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 caagcctgcattttcagcactt 257 |||||||||||||||||||||| Sbjct: 4256809 caagcctgcattttcagcactt 4256788
>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence Length = 170302 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aacaggagtcagtgctcaagg 87 ||||||||||||||||||||| Sbjct: 169166 aacaggagtcagtgctcaagg 169146
>gb|AC021198.2|F14D7 Sequence of BAC F14D7 from Arabidopsis thaliana chromosome 1, complete sequence Length = 81513 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 gaacctaattcctcgagtaat 137 ||||||||||||||||||||| Sbjct: 28171 gaacctaattcctcgagtaat 28151
>gb|AC121513.15| Mus musculus chromosome 18, clone RP24-391B9, complete sequence Length = 160247 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aacaggagtcagtgctcaagg 87 ||||||||||||||||||||| Sbjct: 19536 aacaggagtcagtgctcaagg 19516
>gb|DQ116823.1| Saccharomyces cerevisiae strain YJM326 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116822.1| Saccharomyces cerevisiae strain YJM320 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116821.1| Saccharomyces cerevisiae strain YJM1129 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116820.1| Saccharomyces cerevisiae strain YJM269 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116819.1| Saccharomyces cerevisiae strain YJM270 TAO3p gene, complete cds Length = 7128 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116818.1| Saccharomyces cerevisiae strain D273-10B TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116816.1| Saccharomyces cerevisiae strain Y55 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116815.1| Saccharomyces cerevisiae strain YJM145 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ116813.1| Saccharomyces cerevisiae strain SK1 TAO3p gene, complete cds Length = 7131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 384 actttgctgcttttgttcagg 364
>gb|DQ115392.1| Saccharomyces cerevisiae Vhs2p (VHS2) gene, partial cds; and Yil135c-Ap (YIL134C-A), Flx1p (FLX1), Rpl16ap (RPL16A), Csm2p (CSM2), Fkh1p (FKH1), Yil130wp (YIL130W), Tao3p (TAO3), Met18p (MET18), Yil127cp (YIL127C), Sth1p (STH1), Kgd1p (KGD1), Ayr1p (AYR1), and Sim1p (SIM1) genes, complete cds Length = 34297 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 actttgctgcttttgttcagg 39 ||||||||||||||||||||| Sbjct: 17279 actttgctgcttttgttcagg 17299
>emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chromosome X, complete sequence Length = 264395 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 aagcctgcattttcagcactt 257 ||||||||||||||||||||| Sbjct: 47539 aagcctgcattttcagcactt 47559
>ref|XM_633708.1| Dictyostelium discoideum PAICS (DDB0230088), partial mRNA Length = 2994 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/29 (89%) Strand = Plus / Minus Query: 258 ccaattgcaacagtnncancaggaatacc 286 |||||||||||||| || |||||||||| Sbjct: 1433 ccaattgcaacagtaccaacaggaatacc 1405
>emb|Z38059.1|SC4357 S.cerevisiae chromosome IX lambda clones 4357-3717 Length = 75317 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ctttgctgcttttgttcagg 39 |||||||||||||||||||| Sbjct: 73884 ctttgctgcttttgttcagg 73903
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 acagtaacaggagtcagtgc 81 |||||||||||||||||||| Sbjct: 1295599 acagtaacaggagtcagtgc 1295580
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cctttcggcatctgcacaat 304 |||||||||||||||||||| Sbjct: 2746531 cctttcggcatctgcacaat 2746550
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tttcagcacttccaattgca 266 |||||||||||||||||||| Sbjct: 2027009 tttcagcacttccaattgca 2027028
>gb|DQ116824.1| Saccharomyces cerevisiae strain Sigma1278b TAO3p gene, complete cds Length = 7131 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ctttgctgcttttgttcagg 39 |||||||||||||||||||| Sbjct: 383 ctttgctgcttttgttcagg 364
>gb|DQ116817.1| Saccharomyces cerevisiae strain A364A TAO3p gene, complete cds Length = 7131 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ctttgctgcttttgttcagg 39 |||||||||||||||||||| Sbjct: 383 ctttgctgcttttgttcagg 364
>gb|DQ116814.1| Saccharomyces cerevisiae strain W303 TAO3p gene, complete cds Length = 7131 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ctttgctgcttttgttcagg 39 |||||||||||||||||||| Sbjct: 383 ctttgctgcttttgttcagg 364
>gb|DQ116812.1| Saccharomyces cerevisiae strain S288c TAO3p gene, complete cds Length = 7131 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ctttgctgcttttgttcagg 39 |||||||||||||||||||| Sbjct: 383 ctttgctgcttttgttcagg 364 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,443,360 Number of Sequences: 3902068 Number of extensions: 2443360 Number of successful extensions: 43513 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43417 Number of HSP's gapped (non-prelim): 96 length of query: 338 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 316 effective length of database: 17,147,199,772 effective search space: 5418515127952 effective search space used: 5418515127952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)