ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 7e-39
2ref|NM_188276.1| Oryza sativa (japonica cultivar-group), predic... 151 2e-33
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
4dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
5dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
6gb|AF457972.1| Zea mays clone bms1.pk0021.g7, mRNA sequence 82 1e-12
7dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 44 0.29
8gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome... 42 1.1
9gb|AC021198.2|F14D7 Sequence of BAC F14D7 from Arabidopsis thali... 42 1.1
10gb|AC121513.15| Mus musculus chromosome 18, clone RP24-391B9, co... 42 1.1
11gb|DQ116823.1| Saccharomyces cerevisiae strain YJM326 TAO3p gene... 42 1.1
12gb|DQ116822.1| Saccharomyces cerevisiae strain YJM320 TAO3p gene... 42 1.1
13gb|DQ116821.1| Saccharomyces cerevisiae strain YJM1129 TAO3p gen... 42 1.1
14gb|DQ116820.1| Saccharomyces cerevisiae strain YJM269 TAO3p gene... 42 1.1
15gb|DQ116819.1| Saccharomyces cerevisiae strain YJM270 TAO3p gene... 42 1.1
16gb|DQ116818.1| Saccharomyces cerevisiae strain D273-10B TAO3p ge... 42 1.1
17gb|DQ116816.1| Saccharomyces cerevisiae strain Y55 TAO3p gene, c... 42 1.1
18gb|DQ116815.1| Saccharomyces cerevisiae strain YJM145 TAO3p gene... 42 1.1
19gb|DQ116813.1| Saccharomyces cerevisiae strain SK1 TAO3p gene, c... 42 1.1
20gb|DQ115392.1| Saccharomyces cerevisiae Vhs2p (VHS2) gene, parti... 42 1.1
21emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chr... 42 1.1
22ref|XM_633708.1| Dictyostelium discoideum PAICS (DDB0230088), pa... 40 4.5
23emb|Z38059.1|SC4357 S.cerevisiae chromosome IX lambda clones 435... 40 4.5
24dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 4.5
25gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 4.5
26gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 4.5
27gb|DQ116824.1| Saccharomyces cerevisiae strain Sigma1278b TAO3p ... 40 4.5
28gb|DQ116817.1| Saccharomyces cerevisiae strain A364A TAO3p gene,... 40 4.5
29gb|DQ116814.1| Saccharomyces cerevisiae strain W303 TAO3p gene, ... 40 4.5
30gb|DQ116812.1| Saccharomyces cerevisiae strain S288c TAO3p gene,... 40 4.5 
>dbj|AK068172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129D15, full
            insert sequence
          Length = 2276

 Score =  168 bits (85), Expect = 7e-39
 Identities = 137/156 (87%)
 Strand = Plus / Minus

                                                                        
Query: 164  cagatcttgctggtattcatttaccctgtccgacaactcaggatcccttgaggcaagcat 223
            |||||| |||||||||||| || || |||||  |||||||||||| |||||||| |||||
Sbjct: 1942 cagatcatgctggtattcagttgccttgtcccccaactcaggatctcttgaggccagcat 1883

                                                                        
Query: 224  ccgaactgncaacaagcctgcattttcagcacttccaattgcaacagtnncancaggaat 283
            || ||||| ||| || ||||||||||| ||| ||||||||||||||||  || |||||||
Sbjct: 1882 cctaactgccaataaacctgcattttccgcatttccaattgcaacagtagcaacaggaat 1823

                                                
Query: 284  acctttcggcatctgcacaatanataggagggaatc 319
            ||||||||||||||| |||||| |||||||||||||
Sbjct: 1822 acctttcggcatctggacaatagataggagggaatc 1787
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>ref|NM_188276.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1923

 Score =  151 bits (76), Expect = 2e-33
 Identities = 110/123 (89%)
 Strand = Plus / Minus

                                                                        
Query: 197  caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256
            |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| |
Sbjct: 1746 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 1687

                                                                        
Query: 257  tccaattgcaacagtnncancaggaatacctttcggcatctgcacaatanataggaggga 316
            |||||||||||||||  || |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 1686 tccaattgcaacagtagcaacaggaatacctttcggcatctggacaatagataggaggga 1627

               
Query: 317  atc 319
            |||
Sbjct: 1626 atc 1624
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 4e-25
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                           
Query: 197     caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256
               |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| |
Sbjct: 5410770 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 5410711

                                                         
Query: 257     tccaattgcaacagtnncancaggaatacctttcggcatctg 298
               |||||||||||||||  || ||||||||||||||||||||||
Sbjct: 5410710 tccaattgcaacagtagcaacaggaatacctttcggcatctg 5410669



 Score =  107 bits (54), Expect = 2e-20
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                           
Query: 197     caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256
               |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| |
Sbjct: 5418290 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttctgcatt 5418231

                                                         
Query: 257     tccaattgcaacagtnncancaggaatacctttcggcatctg 298
               |||||||||||||||  || ||||||||| ||||| ||||||
Sbjct: 5418230 tccaattgcaacagtagcaacaggaatacttttcgacatctg 5418189
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>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1046G12
          Length = 163533

 Score =  123 bits (62), Expect = 4e-25
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                          
Query: 197    caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256
              |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| |
Sbjct: 162114 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 162055

                                                        
Query: 257    tccaattgcaacagtnncancaggaatacctttcggcatctg 298
              |||||||||||||||  || ||||||||||||||||||||||
Sbjct: 162054 tccaattgcaacagtagcaacaggaatacctttcggcatctg 162013
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>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1015E06
          Length = 164583

 Score =  123 bits (62), Expect = 4e-25
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                        
Query: 197  caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256
            |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| |
Sbjct: 7610 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttccgcatt 7551

                                                      
Query: 257  tccaattgcaacagtnncancaggaatacctttcggcatctg 298
            |||||||||||||||  || ||||||||||||||||||||||
Sbjct: 7550 tccaattgcaacagtagcaacaggaatacctttcggcatctg 7509



 Score =  107 bits (54), Expect = 2e-20
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                         
Query: 197   caactcaggatcccttgaggcaagcatccgaactgncaacaagcctgcattttcagcact 256
             |||||||||||| |||||||| ||||||| ||||| ||| || ||||||||||| ||| |
Sbjct: 15130 caactcaggatctcttgaggccagcatcctaactgccaataaacctgcattttctgcatt 15071

                                                       
Query: 257   tccaattgcaacagtnncancaggaatacctttcggcatctg 298
             |||||||||||||||  || ||||||||| ||||| ||||||
Sbjct: 15070 tccaattgcaacagtagcaacaggaatacttttcgacatctg 15029
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>gb|AF457972.1| Zea mays clone bms1.pk0021.g7, mRNA sequence
          Length = 585

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 111/136 (81%)
 Strand = Plus / Plus

                                                                       
Query: 184 ttaccctgtccgacaactcaggatcccttgaggcaagcatccgaactgncaacaagcctg 243
           |||||||||||   | ||||||||| ||||  || || |||| | ||| || ||| ||||
Sbjct: 274 ttaccctgtcctggagctcaggatctcttgcagccagaatcctagctgccagcaaacctg 333

                                                                       
Query: 244 cattttcagcacttccaattgcaacagtnncancaggaatacctttcggcatctgcacaa 303
           ||||||| ||| | || || ||||||||  || ||||||||||||| ||||| |||||||
Sbjct: 334 cattttctgcattcccgatagcaacagtcgcaacaggaataccttttggcatttgcacaa 393

                           
Query: 304 tanataggagggaatc 319
           || |||||||||||||
Sbjct: 394 tagataggagggaatc 409
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 236     caagcctgcattttcagcactt 257
               ||||||||||||||||||||||
Sbjct: 4256809 caagcctgcattttcagcactt 4256788
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>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence
          Length = 170302

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 67     aacaggagtcagtgctcaagg 87
              |||||||||||||||||||||
Sbjct: 169166 aacaggagtcagtgctcaagg 169146
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>gb|AC021198.2|F14D7 Sequence of BAC F14D7 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81513

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   gaacctaattcctcgagtaat 137
             |||||||||||||||||||||
Sbjct: 28171 gaacctaattcctcgagtaat 28151
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>gb|AC121513.15| Mus musculus chromosome 18, clone RP24-391B9, complete sequence
          Length = 160247

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    aacaggagtcagtgctcaagg 87
             |||||||||||||||||||||
Sbjct: 19536 aacaggagtcagtgctcaagg 19516
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>gb|DQ116823.1| Saccharomyces cerevisiae strain YJM326 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116822.1| Saccharomyces cerevisiae strain YJM320 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116821.1| Saccharomyces cerevisiae strain YJM1129 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116820.1| Saccharomyces cerevisiae strain YJM269 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116819.1| Saccharomyces cerevisiae strain YJM270 TAO3p gene, complete cds
          Length = 7128

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116818.1| Saccharomyces cerevisiae strain D273-10B TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116816.1| Saccharomyces cerevisiae strain Y55 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116815.1| Saccharomyces cerevisiae strain YJM145 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ116813.1| Saccharomyces cerevisiae strain SK1 TAO3p gene, complete cds
          Length = 7131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  actttgctgcttttgttcagg 39
           |||||||||||||||||||||
Sbjct: 384 actttgctgcttttgttcagg 364
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>gb|DQ115392.1| Saccharomyces cerevisiae Vhs2p (VHS2) gene, partial cds; and Yil135c-Ap
             (YIL134C-A), Flx1p (FLX1), Rpl16ap (RPL16A), Csm2p (CSM2),
             Fkh1p (FKH1), Yil130wp (YIL130W), Tao3p (TAO3), Met18p
             (MET18), Yil127cp (YIL127C), Sth1p (STH1), Kgd1p (KGD1),
             Ayr1p (AYR1), and Sim1p (SIM1) genes, complete cds
          Length = 34297

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    actttgctgcttttgttcagg 39
             |||||||||||||||||||||
Sbjct: 17279 actttgctgcttttgttcagg 17299
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>emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chromosome X, complete
             sequence
          Length = 264395

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   aagcctgcattttcagcactt 257
             |||||||||||||||||||||
Sbjct: 47539 aagcctgcattttcagcactt 47559
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>ref|XM_633708.1| Dictyostelium discoideum PAICS (DDB0230088), partial mRNA
          Length = 2994

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/29 (89%)
 Strand = Plus / Minus

                                         
Query: 258  ccaattgcaacagtnncancaggaatacc 286
            ||||||||||||||  || ||||||||||
Sbjct: 1433 ccaattgcaacagtaccaacaggaatacc 1405
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>emb|Z38059.1|SC4357 S.cerevisiae chromosome IX lambda clones 4357-3717
          Length = 75317

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ctttgctgcttttgttcagg 39
             ||||||||||||||||||||
Sbjct: 73884 ctttgctgcttttgttcagg 73903
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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 62      acagtaacaggagtcagtgc 81
               ||||||||||||||||||||
Sbjct: 1295599 acagtaacaggagtcagtgc 1295580
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     cctttcggcatctgcacaat 304
               ||||||||||||||||||||
Sbjct: 2746531 cctttcggcatctgcacaat 2746550
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     tttcagcacttccaattgca 266
               ||||||||||||||||||||
Sbjct: 2027009 tttcagcacttccaattgca 2027028
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>gb|DQ116824.1| Saccharomyces cerevisiae strain Sigma1278b TAO3p gene, complete cds
          Length = 7131

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  ctttgctgcttttgttcagg 39
           ||||||||||||||||||||
Sbjct: 383 ctttgctgcttttgttcagg 364
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>gb|DQ116817.1| Saccharomyces cerevisiae strain A364A TAO3p gene, complete cds
          Length = 7131

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  ctttgctgcttttgttcagg 39
           ||||||||||||||||||||
Sbjct: 383 ctttgctgcttttgttcagg 364
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>gb|DQ116814.1| Saccharomyces cerevisiae strain W303 TAO3p gene, complete cds
          Length = 7131

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  ctttgctgcttttgttcagg 39
           ||||||||||||||||||||
Sbjct: 383 ctttgctgcttttgttcagg 364
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>gb|DQ116812.1| Saccharomyces cerevisiae strain S288c TAO3p gene, complete cds
          Length = 7131

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  ctttgctgcttttgttcagg 39
           ||||||||||||||||||||
Sbjct: 383 ctttgctgcttttgttcagg 364


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,443,360
Number of Sequences: 3902068
Number of extensions: 2443360
Number of successful extensions: 43513
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43417
Number of HSP's gapped (non-prelim): 96
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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