ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EWG_DROME (Q24312) DNA-binding protein Ewg (Protein erect wing) 34 0.37
2METK_BACHD (Q9K7Q9) S-adenosylmethionine synthetase (EC 2.5.1.6)... 30 4.0
3PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase ... 30 4.0
4KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-a... 30 5.3
5ZP1_RAT (O54766) Zona pellucida sperm-binding protein 1 precurso... 30 6.9
6METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13) (5-methylt... 30 6.9
7DAF_CAVPO (Q60401) Complement decay-accelerating factor precurso... 29 9.0

>EWG_DROME (Q24312) DNA-binding protein Ewg (Protein erect wing)|
          Length = 733

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 23/65 (35%), Positives = 28/65 (43%)
 Frame = -2

Query: 550 LPTGRSLPTTGVDPTHPTTGVTHPAMVIATVQDPHTVTEGGGHAPMTVMFQHTTAGAILQ 371
           LP G +    GV   H   G        AT+Q   ++T+  GH  MTV    T  G I  
Sbjct: 569 LPDGTTAQVQGVATLHQGEGG-------ATIQTVQSLTDVNGHENMTVDLTETQDGQIYI 621

Query: 370 GTEDG 356
            TEDG
Sbjct: 622 TTEDG 626



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>METK_BACHD (Q9K7Q9) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 399

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 346 AAYHHAGATPVAAPWRQKNQGAVLRRK 266
           AAY H G T V  PW Q ++  +LR++
Sbjct: 372 AAYGHFGRTDVELPWEQTDKAEILRQQ 398



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>PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1445

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 592 GHPTLPMAEGDHTLLPT----GRSLPTTGVDPTHPTTGVTHPAMVIATVQDPHTVTE 434
           GH T+P  E DHT +PT    GR     G+DP            ++ + Q P T TE
Sbjct: 637 GHQTIPGHEQDHTAVPTDQTGGRRDAGPGLDPD-----------MVTSTQVPPTATE 682



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>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated|
           protein 10.10) (High sulfur keratin-associated protein
           10.10) (Keratin-associated protein 18-10)
           (Keratin-associated protein 18.10)
          Length = 251

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
 Frame = +2

Query: 218 SQSQVTCC-AMPCFQHILSAENSSLILLTPGSSYGSSSCVVIRCESNSVFCSLENSACC- 391
           S  Q TCC + PC Q       S  +   P  S  S+SC    C+ +S   +   ++CC 
Sbjct: 130 SSCQPTCCTSSPCQQACCVPVCSKSVCYVPVCSGASTSC----CQQSSCQPACCTASCCR 185

Query: 392 -----SMLKHNGHGSMTSAFCNCMGILNGGDDHSGVSDACRRVSRIYA--CGRETPTCRK 550
                S+L H     +  + C C+ + + G   S    +C R +   +  C    P C +
Sbjct: 186 PSSSVSLLCH----PVCKSTC-CVPVPSCGASASSCQPSCCRTASCVSLLC---RPVCSR 237

Query: 551 ESMISFC 571
            +  S C
Sbjct: 238 PACYSLC 244



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>ZP1_RAT (O54766) Zona pellucida sperm-binding protein 1 precursor (Zona|
           pellucida glycoprotein 1) (Zp-1)
          Length = 617

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = -2

Query: 583 TLPMAEGDHTLLPTGRSLPTTGVDPTHPTTGVTHPAMVIATVQDPHTVTEGGGHAPMTVM 404
           TL   + DH L P     P T   P  P T   HP          HT+  G GH  +T +
Sbjct: 125 TLICPKPDHILTPESYLAPPTTPQPFIPHTFALHPI-------SGHTLA-GSGHTGLTTL 176

Query: 403 FQHT 392
           +  T
Sbjct: 177 YPET 180



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>METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13)|
           (5-methyltetrahydrofolate--homocysteine
           methyltransferase) (Methionine synthase, vitamin-B12
           dependent isozyme) (MS)
          Length = 1206

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 466 ATVQDPHTVTEGGGHAPMTVMFQHTTAGAILQGTEDGVTLAAYHHAG 326
           A +     +T+ G H P+ V     T G +L G+E G  LAA    G
Sbjct: 179 AVLGSRRAMTQAGRHIPVFVHVTVETTGTMLLGSEIGAALAAVEPLG 225



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>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55|
           antigen) [Contains: Complement decay-accelerating
           factor, GPI-anchored isoform]
          Length = 507

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
 Frame = -2

Query: 586 PTLPMAEGDHTLLPTGRSLPTTGVDPTHPT----TGVTHPAMVIATVQDPHTVTEGGGHA 419
           PT   A G  T LPT +        P  PT    T V  P   + T Q   TV   G   
Sbjct: 295 PTTTSAPGTTTTLPTQKPTTVNTAGPEVPTTQRSTTVNVPGTKVPTTQRSTTVNVPGTEV 354

Query: 418 PMT 410
           P T
Sbjct: 355 PTT 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,111,733
Number of Sequences: 219361
Number of extensions: 1381811
Number of successful extensions: 5344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5336
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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