Clone Name | rbah61l01 |
---|---|
Clone Library Name | barley_pub |
>QORL_ARATH (Q9ZUC1) Quinone oxidoreductase-like protein At1g23740, chloroplast| precursor (EC 1.-.-.-) Length = 386 Score = 203 bits (516), Expect = 3e-52 Identities = 101/144 (70%), Positives = 114/144 (79%) Frame = -1 Query: 548 VIQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPDKYDVVFDXXXXXX 369 VIQLAK VYGASKVAATAST KLEL++SLGAD+AIDYTK++ +D+PDKYDVVFD Sbjct: 243 VIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCD 302 Query: 368 XXXXXXXXXXXXXVLTGAVTPPGFRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFS 189 LTGAVTPPGFRFVVTS+G VL KLNPY+ESGKVKPVVDPKGPFPFS Sbjct: 303 KAVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFS 362 Query: 188 QVVEAFSYLETGRAAGKVVISPVP 117 +V +AFSYLET A GKVV+ P+P Sbjct: 363 RVADAFSYLETNHATGKVVVYPIP 386
>QOR_LEIAM (P42865) Probable quinone oxidoreductase (EC 1.6.5.5)| (NADPH:quinone reductase) (P36) Length = 340 Score = 49.7 bits (117), Expect = 5e-06 Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 39/178 (21%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDD-----MPDKYDVVF--- 390 +QL K VYG + + +S K E LKS+G D I+Y +S D P DVV+ Sbjct: 163 VQLLKHVYGCTVIGTCSSEEKAEFLKSIGCDHVINYKTESLDGRLHELCPKGVDVVYECV 222 Query: 389 ------DXXXXXXXXXXXXXXXXXXXVLTGAVTP-------------------------P 303 D +G V P P Sbjct: 223 GGHTFNDAVRHVAVHARVVIIGSISSYKSGEVVPFSDPSGTSVTMLLLVKSASLNGFFLP 282 Query: 302 GFRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVI 129 F V+ +A L YL++G+VK VD K S V +A +L +G GKV++ Sbjct: 283 QFHDVIP---KYMANLLQYLKAGQVKLFVDKKVFHGLSSVADAVDHLYSGANYGKVLV 337
>RT4I1_BRARE (Q7T3C7) Reticulon-4-interacting protein 1 homolog, mitochondrial| precursor Length = 387 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/50 (46%), Positives = 34/50 (68%) Frame = -1 Query: 275 GSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVIS 126 GS L +++ +++GKV+PVV+ F F+QV EAF +E G A GK V+S Sbjct: 333 GSALDEVSEMVDAGKVRPVVEEV--FSFAQVPEAFQKVEQGHARGKTVVS 380
>RT4I1_MOUSE (Q924D0) Reticulon-4-interacting protein 1, mitochondrial precursor| (NOGO-interacting mitochondrial protein) Length = 396 Score = 42.7 bits (99), Expect = 7e-04 Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 38/180 (21%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPDKYDVVFDXXXXXXX 366 IQ+ K +GA V A S EL++ LGAD IDYT S ++ K +FD Sbjct: 222 IQVMK-AWGAH-VTAVCSKDASELVRKLGADEVIDYTLGSVEEQL-KSLKLFDFILDNVG 278 Query: 365 XXXXXXXXXXXXVLTGA-----VTP------------------------------PGFRF 291 +GA VTP G + Sbjct: 279 GSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGMLQTGVTVGTKALKHLWQGVHY 338 Query: 290 ---VVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPV 120 + G L ++ +++GK++PV++ FPFS+V EAF +E G A GK V++ V Sbjct: 339 RWAFFMASGPYLDEIAELVDAGKIRPVIE--RTFPFSEVPEAFLKVERGHARGKTVVNVV 396
>RT4I1_HUMAN (Q8WWV3) Reticulon-4-interacting protein 1, mitochondrial precursor| (NOGO-interacting mitochondrial protein) Length = 396 Score = 42.4 bits (98), Expect = 9e-04 Identities = 22/54 (40%), Positives = 34/54 (62%) Frame = -1 Query: 281 SDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPV 120 + G L + +++GK++PV++ FPFS+V EAF +E G A GK VI+ V Sbjct: 345 ASGPCLDDIAELVDAGKIRPVIEQT--FPFSKVPEAFLKVERGHARGKTVINVV 396
>YNN4_YEAST (P53912) Hypothetical 41.2 kDa protein in FPR1-TOM22 intergenic| region Length = 376 Score = 36.6 bits (83), Expect = 0.048 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = -1 Query: 548 VIQLAKQVYGASKVAATASTPKLELLKSLGADVAIDY-TKDSFDDMPDKYD 399 +IQLAK++ G SK+ AS +LLK GAD DY D + + KY+ Sbjct: 191 LIQLAKKLNGFSKIIVVASRKHEKLLKEYGADELFDYHDADVIEQIKKKYN 241
>QORH_ARATH (Q9SV68) Putative chloroplastic quinone-oxidoreductase homolog (EC| 1.-.-.-) Length = 329 Score = 35.4 bits (80), Expect = 0.11 Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 22/163 (13%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPD----KYDVVFDXXX 378 +QLAK + V AT +E +KSLGAD +DY + KYD V Sbjct: 173 VQLAK--LANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCAN 230 Query: 377 XXXXXXXXXXXXXXXXVLTGAVTP-PGFRFVVTSDGSVLAK--LNPYL------------ 243 V+ +TP P + ++K L P L Sbjct: 231 GIPFSVFEPNLSENGKVID--ITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMV 288 Query: 242 ---ESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISP 123 + GKVK V+D K P S+ +A++ G A GK+++ P Sbjct: 289 NLVKEGKVKTVIDSK--HPLSKAEDAWAKSIDGHATGKIIVEP 329
>QORH_SPIOL (Q8H0M1) Chloroplastic quinone-oxidoreductase homolog (EC 1.-.-.-)| (ceQORH) Length = 329 Score = 34.7 bits (78), Expect = 0.18 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 20/161 (12%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPD----KYDVVFDXXX 378 +QLAK G + V AT L+ +K LGAD +DY + KYD V Sbjct: 173 VQLAK--LGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGAS 230 Query: 377 XXXXXXXXXXXXXXXXVL------TGAVTPPGFRFVVTSDGSVLAKLNP----------Y 246 V+ T +T + + V L P Sbjct: 231 GIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNL 290 Query: 245 LESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISP 123 ++ K+K V+D K P S+ +A+S + G A GK++I P Sbjct: 291 VKEKKLKTVIDSK--HPLSKGEDAWSRIMGGHATGKIIIEP 329
>YCZ2_YEAST (P25608) 40.1 kDa protein in GIT1-PAU3 intergenic region| Length = 368 Score = 32.7 bits (73), Expect = 0.69 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -1 Query: 548 VIQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTK-DSFDDMPDKYD 399 +IQLA ++ G +K+ AS +LLK GAD DY D + + KY+ Sbjct: 183 LIQLANKLNGFTKIIVVASRKHEKLLKEYGADQLFDYHDIDVVEQIKHKYN 233
>YL460_YEAST (P54007) Hypothetical 41.1 kDa protein ON CDC91-PAU4 intergenic| region Length = 376 Score = 32.7 bits (73), Expect = 0.69 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -1 Query: 548 VIQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTK-DSFDDMPDKYD 399 +IQLA ++ G +K+ AS +LLK GAD DY D + + KY+ Sbjct: 191 LIQLANKLNGFTKIIVVASRKHEKLLKEYGADELFDYHDIDVVEQIKHKYN 241
>CND2_MOUSE (Q8C156) Condensin complex subunit 2 (Barren homolog protein 1)| (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog) Length = 731 Score = 32.3 bits (72), Expect = 0.90 Identities = 25/85 (29%), Positives = 36/85 (42%) Frame = -1 Query: 320 GAVTPPGFRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAG 141 G TPP + DGS L E+ + K PK + + S + A G Sbjct: 179 GKDTPPQGEESHSGDGSTL-------ETERTKKPAKPKKKQSCKTIEQNLSNINVSEADG 231 Query: 140 KVVISPVP*DTAVNS*QPSTSGVFL 66 K + P+ TA + + ST+GVFL Sbjct: 232 KCAVDPMFQKTAASFDECSTTGVFL 256
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 32.3 bits (72), Expect = 0.90 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -1 Query: 269 VLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPVP 117 V+A+L G +KP +D +PF +V +A ++ + GKV++ P P Sbjct: 341 VVARLLALYNQGHIKPHID--SVWPFEKVADAMKQMQEKKNVGKVLLVPGP 389
>TOXD_COCCA (P54006) Protein TOXD| Length = 297 Score = 32.3 bits (72), Expect = 0.90 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDD-----MPDKYDVVFD 387 IQLAK +V T S EL+KSLGAD+ DY + + D +K +VFD Sbjct: 170 IQLAK--LSGYRVITTCSPHHFELMKSLGADLVFDYHEITSADHIRRCTQNKLKLVFD 225
>VAT1_MOUSE (Q62465) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 406 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -1 Query: 272 SVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPVP 117 SV+ +L G +KP +D +PF +V +A ++ + GKV++ P P Sbjct: 353 SVVTRLVALYNQGHIKPRID--SVWPFEKVADAMKQMQEKKNIGKVLLVPGP 402
>AST1_YEAST (P35183) Protein AST1| Length = 429 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -1 Query: 248 YLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVIS 126 +L++G VK VVD + + EAFSY+ T RA GK++++ Sbjct: 387 FLKNGTVKCVVDKV--YDWKDHKEAFSYMATQRAQGKLIMN 425
>PBUX_BACSU (P42086) Xanthine permease| Length = 438 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +1 Query: 10 IFFCFVCTIQQIFCSVIRGKNTPLVLGC*LFTAVS 114 IF C V T+ Q++ + G P+VLGC FTAVS Sbjct: 49 IFMCGVATLLQVWSNRFFGIGLPVVLGC-TFTAVS 82
>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein-binding protein 1) (PTPRF-interacting protein-binding protein 1) (hSGT2) Length = 1011 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +3 Query: 63 WQKHTTCAWLLAIYSGVSWNRRNDHFAGGSSCLEVGKRLHDLGEGERPLGVDHRLHLPGL 242 W K C WL+ G N A G + L+ ++ DL E+ LG+ H LH L Sbjct: 647 WTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQ--DL---EKELGIKHSLHRKKL 701 Query: 243 EVRVE 257 ++ ++ Sbjct: 702 QLALQ 706
>FAS_BOVIN (Q71SP7) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2513 Score = 31.6 bits (70), Expect = 1.5 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -1 Query: 260 KLNPYLESGKVKPVVDP--KGPFPFSQVVEAFSYLETGRAAGKVVI 129 +++ L++G K VV P + FP +Q +AF Y+ G+ GKVVI Sbjct: 1811 EVSTLLKAGIRKGVVQPLKRTVFPRTQAEDAFRYMAQGKHIGKVVI 1856
>YMN1_YEAST (Q03102) Hypothetical 40.0 kDa protein in COX14-COS3 intergenic| region Length = 365 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTP-KLELLKSLGAD-VAIDYTKDSF 423 IQLA V+ ASKV A A P K+ ++S G + V +DY SF Sbjct: 183 IQLALNVFKASKVIAIAGGPEKVAFVESFGDNVVGVDYKDPSF 225
>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3| precursor Length = 556 Score = 30.4 bits (67), Expect = 3.4 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 2/113 (1%) Frame = +1 Query: 178 STTWEKGKGPLGSTTGFTFPDSR*GLSFARTDPSEVTTNRNPGGVTAPVRXXXXXXXXXX 357 STT + STT T D + A T + TT+ + T+ Sbjct: 155 STTSSLSSAQISSTTRRTSTDMKSSEMIATTVSTTSTTSSSTSSTTSSTTSSTTSSTTSS 214 Query: 358 XXAFSPWPTASNTTSYL--SGMSSKLSLV*SMATSAPRLFRSSSFGVLAVAAT 510 + S T S+TTS S SS S S TS+ +S F V + +++ Sbjct: 215 TTSSSTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSIFSVTSSSSS 267
>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2504 Score = 30.4 bits (67), Expect = 3.4 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = -1 Query: 269 VLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVI 129 V A L + G VKP+ FP +QV +AF Y+ G+ GKV++ Sbjct: 1803 VAALLKAGIRDGVVKPLKCTV--FPKAQVEDAFRYMAQGKHIGKVLV 1847
>SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing protein 6 (Ankyrin| repeat domain-containing protein 14) Length = 871 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3 Query: 279 RRVRPGEAQPLPRVREGEAGGRPQGAFPLLPG 184 R + PG A+P R E EAG P GA PG Sbjct: 27 RLLEPGAAEPAERGAEPEAGAEPAGAEVAGPG 58
>DHSO_MACFA (Q4R639) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol| 2-dehydrogenase) Length = 356 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -1 Query: 539 LAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPDKYD 399 +AK + A V S P+L K +GAD+ + +K+S ++ K + Sbjct: 190 VAKAMGAAQVVVTDLSAPRLSKAKEIGADLVLQISKESPQEIAGKVE 236
>ADH1_CANAL (P43067) Alcohol dehydrogenase 1 (EC 1.1.1.1) (40 kDa allergen)| (Allergen Cand a 1) (Can a 1) (Can a I) Length = 350 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -1 Query: 545 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKD 429 +Q A+ + G VA K E +KSLGA+ +D+TKD Sbjct: 190 VQYARAM-GLRVVAIDGGDEKGEFVKSLGAEAYVDFTKD 227
>TAGF_BACSU (P13485) CDP-glycerol:poly(glycerophosphate)| glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F) Length = 746 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -1 Query: 299 FRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVV 132 F F + G ++ +E+ K D K P F + F YLE+GR++ KVV Sbjct: 684 FDFEKEAPGPLVKTTEETIEAIKQISSPDYKLPVSFGPFYDKFCYLESGRSSEKVV 739
>ASPM_MOUSE (Q8CJ27) Abnormal spindle-like microcephaly-associated protein| homolog (Calmodulin-binding protein 1) (Spindle and hydroxyurea checkpoint abnormal protein) (Calmodulin-binding protein Sha1) Length = 3122 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +3 Query: 48 LLSNPWQKHTTCAWLL-AIYSGVSWNRRNDH 137 LL +K T+CA + A++ G SW ++NDH Sbjct: 2841 LLCRRQEKITSCATRIQALWRGYSWRKKNDH 2871 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,250,118 Number of Sequences: 219361 Number of extensions: 1574453 Number of successful extensions: 5909 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5605 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5894 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)