ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_507580.1| PREDICTED Oryza sativa (japonica cultivar-group... 466 e-128
2ref|XM_482105.1| Oryza sativa (japonica cultivar-group), mRNA 466 e-128
3ref|XM_507214.2| PREDICTED Oryza sativa (japonica cultivar-group... 466 e-128
4dbj|AK109433.2| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
5dbj|AK112013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
6dbj|AK104318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
7dbj|AK069608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 311 1e-81
9dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic D... 311 1e-81
10dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic D... 311 1e-81
11dbj|AK119345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 1e-81
12ref|XM_426551.1| PREDICTED: Gallus gallus similar to carbamoyl-p... 42 1.9
13gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, co... 42 1.9
14emb|CR954965.4| Mouse DNA sequence from clone RP23-19H11 on chro... 42 1.9
15gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome... 42 1.9
16emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.9
17emb|AL670675.7| Mouse DNA sequence from clone RP23-263N18 on chr... 42 1.9
18emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chr... 42 1.9
19gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.4
20gb|AF538844.1| Homo sapiens matrix metalloproteinase 9 (gelatina... 40 7.4
21ref|NM_004994.2| Homo sapiens matrix metallopeptidase 9 (gelatin... 40 7.4
22gb|DQ194553.1| Homo sapiens matrix metallopeptidase 9 (gelatinas... 40 7.4
23gb|BC006093.1| Homo sapiens matrix metallopeptidase 9 (gelatinas... 40 7.4
24gb|AC107743.14| Mus musculus chromosome 1, clone RP23-326A12, co... 40 7.4
25emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, stra... 40 7.4
26emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 40 7.4
27gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.4
28gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 7.4
29gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, comple... 40 7.4
30gb|AE004543.1| Pseudomonas aeruginosa PAO1, section 104 of 529 o... 40 7.4
31gb|AY889934.1| Synthetic construct Homo sapiens clone FLH116913.... 40 7.4
32ref|NM_210926.1| Eremothecium gossypii AFR025Cp (AFR025C), mRNA 40 7.4
33gb|AC139316.4| Mus musculus BAC clone RP24-500I24 from 3, comple... 40 7.4
34emb|AL162458.10| Human DNA sequence from clone RP11-465L10 on ch... 40 7.4
35emb|AL663092.15| Mouse DNA sequence from clone RP23-91I20 on chr... 40 7.4
36gb|J05070.1|HUM4COLA Human type IV collagenase mRNA, complete cds 40 7.4
37gb|M68353.1|HUMIVCOL11 Human type IV collagenase (CLG4B) gene, e... 40 7.4

>ref|XM_507580.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.125
            mRNA
          Length = 1513

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1346 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1287

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1286 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1227

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1226 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1167

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1166 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 1107

                                                                        
Query: 352  accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
            ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 1106 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 1047

                                                                        
Query: 412  ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
            |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 1046 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 987

                                                                        
Query: 472  aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
            |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 986  aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 927

                           
Query: 532  ttcgccagctggatg 546
            || ||||||||||||
Sbjct: 926  ttggccagctggatg 912



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>ref|XM_482105.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1392

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1189 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1130

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1129 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1070

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1069 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1010

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1009 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 950

                                                                        
Query: 352  accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
            ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 949  accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 890

                                                                        
Query: 412  ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
            |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 889  ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 830

                                                                        
Query: 472  aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
            |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 829  aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 770

                           
Query: 532  ttcgccagctggatg 546
            || ||||||||||||
Sbjct: 769  ttggccagctggatg 755



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>ref|XM_507214.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.125
            mRNA
          Length = 1510

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1234 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1175

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1174 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1115

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1114 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1055

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1054 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 995

                                                                        
Query: 352  accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
            ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 994  accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 935

                                                                        
Query: 412  ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
            |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 934  ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 875

                                                                        
Query: 472  aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
            |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 874  aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 815

                           
Query: 532  ttcgccagctggatg 546
            || ||||||||||||
Sbjct: 814  ttggccagctggatg 800



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>dbj|AK109433.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C06, full
            insert sequence
          Length = 1503

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1340 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1281

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1280 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1221

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1220 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1161

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1160 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 1101

                                                                        
Query: 352  accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
            ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 1100 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 1041

                                                                        
Query: 412  ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
            |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 1040 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 981

                                                                        
Query: 472  aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
            |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 980  aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 921

                           
Query: 532  ttcgccagctggatg 546
            || ||||||||||||
Sbjct: 920  ttggccagctggatg 906



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>dbj|AK112013.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C09, full
           insert sequence
          Length = 980

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                       
Query: 112 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
           ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 682 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 623

                                                                       
Query: 172 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
           || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 622 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 563

                                                                       
Query: 232 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
           ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 562 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 503

                                                                       
Query: 292 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
           ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 502 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 443

                                                                       
Query: 352 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
           ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 442 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 383

                                                                       
Query: 412 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
           |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 382 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 323

                                                                       
Query: 472 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
           |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 322 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 263

                          
Query: 532 ttcgccagctggatg 546
           || ||||||||||||
Sbjct: 262 ttggccagctggatg 248



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>dbj|AK104318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D02, full
            insert sequence
          Length = 1392

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1189 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1130

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1129 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1070

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1069 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1010

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1009 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 950

                                                                        
Query: 352  accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
            ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 949  accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 890

                                                                        
Query: 412  ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
            |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 889  ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 830

                                                                        
Query: 472  aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
            |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 829  aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 770

                           
Query: 532  ttcgccagctggatg 546
            || ||||||||||||
Sbjct: 769  ttggccagctggatg 755



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>dbj|AK069608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N13, full
            insert sequence
          Length = 1510

 Score =  466 bits (235), Expect = e-128
 Identities = 385/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1234 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1175

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1174 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1115

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1114 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1055

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1054 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 995

                                                                        
Query: 352  accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 411
            ||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 994  accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 935

                                                                        
Query: 412  ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 471
            |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || 
Sbjct: 934  ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 875

                                                                        
Query: 472  aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 531
            |||||||||||||| || ||||| || || ||||||||||| || |||||||| || |||
Sbjct: 874  aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 815

                           
Query: 532  ttcgccagctggatg 546
            || ||||||||||||
Sbjct: 814  ttggccagctggatg 800



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  311 bits (157), Expect = 1e-81
 Identities = 241/269 (89%)
 Strand = Plus / Plus

                                                                            
Query: 112      tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
                ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 17848737 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 17848796

                                                                            
Query: 172      aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
                || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 17848797 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 17848856

                                                                            
Query: 232      ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
                ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 17848857 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 17848916

                                                                            
Query: 292      aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
                ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 17848917 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 17848976

                                             
Query: 352      accaccttgaccgccttctcgccctggcc 380
                ||||||||||| |||||||||||||||||
Sbjct: 17848977 accaccttgacggccttctcgccctggcc 17849005



 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                            
Query: 379      ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 438
                ||||| |||||||  |||||||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 17849108 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 17849167

                                                                            
Query: 439      tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 498
                ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || 
Sbjct: 17849168 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 17849227

                                                            
Query: 499      gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 542
                || ||||||||||| || |||||||| || ||||| ||||||||
Sbjct: 17849228 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 17849271



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>dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0709D11
          Length = 146856

 Score =  311 bits (157), Expect = 1e-81
 Identities = 241/269 (89%)
 Strand = Plus / Plus

                                                                         
Query: 112   tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
             ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 70243 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 70302

                                                                         
Query: 172   aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
             || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 70303 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 70362

                                                                         
Query: 232   ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
             ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 70363 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 70422

                                                                         
Query: 292   aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
             ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 70423 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 70482

                                          
Query: 352   accaccttgaccgccttctcgccctggcc 380
             ||||||||||| |||||||||||||||||
Sbjct: 70483 accaccttgacggccttctcgccctggcc 70511



 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                         
Query: 379   ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 438
             ||||| |||||||  |||||||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 70614 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 70673

                                                                         
Query: 439   tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 498
             ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || 
Sbjct: 70674 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 70733

                                                         
Query: 499   gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 542
             || ||||||||||| || |||||||| || ||||| ||||||||
Sbjct: 70734 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 70777



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>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0011E04
          Length = 136767

 Score =  311 bits (157), Expect = 1e-81
 Identities = 241/269 (89%)
 Strand = Plus / Plus

                                                                          
Query: 112    tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
              ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 123131 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 123190

                                                                          
Query: 172    aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
              || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 123191 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 123250

                                                                          
Query: 232    ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
              ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 123251 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 123310

                                                                          
Query: 292    aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
              ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 123311 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 123370

                                           
Query: 352    accaccttgaccgccttctcgccctggcc 380
              ||||||||||| |||||||||||||||||
Sbjct: 123371 accaccttgacggccttctcgccctggcc 123399



 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                          
Query: 379    ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 438
              ||||| |||||||  |||||||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 123502 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 123561

                                                                          
Query: 439    tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 498
              ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || 
Sbjct: 123562 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 123621

                                                          
Query: 499    gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 542
              || ||||||||||| || |||||||| || ||||| ||||||||
Sbjct: 123622 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 123665



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>dbj|AK119345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E02, full
            insert sequence
          Length = 2944

 Score =  311 bits (157), Expect = 1e-81
 Identities = 241/269 (89%)
 Strand = Plus / Plus

                                                                        
Query: 112  tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 171
            ||||||||||  || || ||||| ||||| |||| |||||| ||||||||||||||||| 
Sbjct: 1197 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1256

                                                                        
Query: 172  aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 231
            || |||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||
Sbjct: 1257 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1316

                                                                        
Query: 232  ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 291
            ||||||||||| ||||| |||||||||||| |||  || |||||||||||||||||||||
Sbjct: 1317 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1376

                                                                        
Query: 292  aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 351
            ||||||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1377 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 1436

                                         
Query: 352  accaccttgaccgccttctcgccctggcc 380
            ||||||||||| |||||||||||||||||
Sbjct: 1437 accaccttgacggccttctcgccctggcc 1465



 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                        
Query: 379  ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 438
            ||||| |||||||  |||||||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 1568 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 1627

                                                                        
Query: 439  tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 498
            ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || 
Sbjct: 1628 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 1687

                                                        
Query: 499  gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 542
            || ||||||||||| || |||||||| || ||||| ||||||||
Sbjct: 1688 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 1731



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>ref|XM_426551.1| PREDICTED: Gallus gallus similar to carbamoyl-phosphate synthetase
           III (LOC428994), mRNA
          Length = 6789

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 469 ttcaggagctccagcttcggggtgc 493
           |||||||||||||||||||| ||||
Sbjct: 944 ttcaggagctccagcttcggcgtgc 968



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>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence
          Length = 206675

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     catcacatatttttctgcttt 24
             |||||||||||||||||||||
Sbjct: 49629 catcacatatttttctgcttt 49609



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>emb|CR954965.4| Mouse DNA sequence from clone RP23-19H11 on chromosome X, complete
              sequence
          Length = 176114

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    aaggggaaaggccccttgggg 213
              |||||||||||||||||||||
Sbjct: 156903 aaggggaaaggccccttgggg 156923



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>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence
          Length = 178222

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 193    aaggggaaaggccccttgggg 213
              |||||||||||||||||||||
Sbjct: 152094 aaggggaaaggccccttgggg 152074



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 435     ggtgtagtcgatggccacgtcggctccca 463
               ||||||||||| |||||||||||| ||||
Sbjct: 3014860 ggtgtagtcgacggccacgtcggcgccca 3014832



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>emb|AL670675.7| Mouse DNA sequence from clone RP23-263N18 on chromosome X, complete
              sequence
          Length = 173987

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    aaggggaaaggccccttgggg 213
              |||||||||||||||||||||
Sbjct: 121448 aaggggaaaggccccttgggg 121468



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>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete
              sequence
          Length = 237318

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     caacaaatattttgctcagta 57
              |||||||||||||||||||||
Sbjct: 120555 caacaaatattttgctcagta 120535



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gcgccggtgaggaccaccac 335
               ||||||||||||||||||||
Sbjct: 1929802 gcgccggtgaggaccaccac 1929821



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>gb|AF538844.1| Homo sapiens matrix metalloproteinase 9 (gelatinase B, 92kD
            gelatinase, 92kD type IV collagenase) (MMP9) gene,
            complete cds
          Length = 11224

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ggccacgtcggctcccaggc 466
            ||||||||||||||||||||
Sbjct: 7290 ggccacgtcggctcccaggc 7271



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>ref|NM_004994.2| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa
            gelatinase, 92kDa type IV collagenase) (MMP9), mRNA
          Length = 2387

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ggccacgtcggctcccaggc 466
            ||||||||||||||||||||
Sbjct: 1852 ggccacgtcggctcccaggc 1833



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>gb|DQ194553.1| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa
            gelatinase, 92kDa type IV collagenase) (MMP9) gene,
            complete cds
          Length = 11651

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ggccacgtcggctcccaggc 466
            ||||||||||||||||||||
Sbjct: 7299 ggccacgtcggctcccaggc 7280



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>gb|BC006093.1| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa
            gelatinase, 92kDa type IV collagenase), mRNA (cDNA clone
            MGC:12688 IMAGE:4054882), complete cds
          Length = 2373

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ggccacgtcggctcccaggc 466
            ||||||||||||||||||||
Sbjct: 1838 ggccacgtcggctcccaggc 1819



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>gb|AC107743.14| Mus musculus chromosome 1, clone RP23-326A12, complete sequence
          Length = 221645

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ggggaaaggccccttggggt 214
             ||||||||||||||||||||
Sbjct: 57015 ggggaaaggccccttggggt 57034



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>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11
          Length = 346161

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    gccgccaccttcgatgcgcc 521
              ||||||||||||||||||||
Sbjct: 198482 gccgccaccttcgatgcgcc 198463



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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    ccgccttctcgccctggccg 381
              ||||||||||||||||||||
Sbjct: 108881 ccgccttctcgccctggccg 108900



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 364     gccttctcgccctggccgactgcg 387
               |||||||||||||||||| |||||
Sbjct: 3316095 gccttctcgccctggccggctgcg 3316118



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 410    ccggcatgtcgtcgaagctgtcct 433
              ||||||||||||||| ||||||||
Sbjct: 486057 ccggcatgtcgtcgatgctgtcct 486034



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>gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, complete sequence
          Length = 140811

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    atttttctgctttgtatgca 31
             ||||||||||||||||||||
Sbjct: 99456 atttttctgctttgtatgca 99437



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>gb|AE004543.1| Pseudomonas aeruginosa PAO1, section 104 of 529 of the complete
            genome
          Length = 10589

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 435  ggtgtagtcgatggccacgtcggc 458
            |||||||||||| |||||||||||
Sbjct: 7973 ggtgtagtcgatcgccacgtcggc 7996



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>gb|AY889934.1| Synthetic construct Homo sapiens clone FLH116913.01X matrix
            metalloproteinase 9 (MMP9) mRNA, complete cds
          Length = 2124

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ggccacgtcggctcccaggc 466
            ||||||||||||||||||||
Sbjct: 1833 ggccacgtcggctcccaggc 1814



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>ref|NM_210926.1| Eremothecium gossypii AFR025Cp (AFR025C), mRNA
          Length = 1401

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 410 ccggcatgtcgtcgaagctgtcct 433
           ||||||||||||||| ||||||||
Sbjct: 575 ccggcatgtcgtcgatgctgtcct 598



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>gb|AC139316.4| Mus musculus BAC clone RP24-500I24 from 3, complete sequence
          Length = 187000

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tttttctgctttgtatgcac 32
             ||||||||||||||||||||
Sbjct: 52360 tttttctgctttgtatgcac 52379



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>emb|AL162458.10| Human DNA sequence from clone RP11-465L10 on chromosome 20, complete
              sequence
          Length = 150791

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    ggccacgtcggctcccaggc 466
              ||||||||||||||||||||
Sbjct: 100622 ggccacgtcggctcccaggc 100603



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>emb|AL663092.15| Mouse DNA sequence from clone RP23-91I20 on chromosome 2, complete
              sequence
          Length = 207554

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 489    ggtgctggctgtggccgccacctt 512
              |||||||||||||||| |||||||
Sbjct: 171909 ggtgctggctgtggccaccacctt 171932



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>gb|J05070.1|HUM4COLA Human type IV collagenase mRNA, complete cds
          Length = 2334

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ggccacgtcggctcccaggc 466
            ||||||||||||||||||||
Sbjct: 1852 ggccacgtcggctcccaggc 1833



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>gb|M68353.1|HUMIVCOL11 Human type IV collagenase (CLG4B) gene, exon 11
          Length = 171

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 ggccacgtcggctcccaggc 466
           ||||||||||||||||||||
Sbjct: 93  ggccacgtcggctcccaggc 74


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,026,943
Number of Sequences: 3902068
Number of extensions: 4026943
Number of successful extensions: 91459
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91100
Number of HSP's gapped (non-prelim): 359
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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