Clone Name | rbah61k24 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016772.1| Zea mays clone Contig605 mRNA sequence Length = 1938 Score = 52.0 bits (26), Expect = 8e-04 Identities = 40/45 (88%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcatt 128 |||||||||||||||||||||||| || || ||||| ||||||| Sbjct: 1682 tcaattgctatctgtgaagtccgcatcaatgacatccccatcatt 1638
>gb|AY224466.1| Oryza sativa (japonica cultivar-group) isolate 23949 heat shock-related protein mRNA, partial cds Length = 1257 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 1257 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 1198 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 1197 tgagcttgtcggtccagca 1179
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 7990552 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 7990493 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 7990492 tgagcttgtcggtccagca 7990474
>dbj|AK121949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107J07, full insert sequence Length = 2462 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 2148 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 2089 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 2088 tgagcttgtcggtccagca 2070
>dbj|AK119535.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B03, full insert sequence Length = 1667 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 1377 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 1318 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 1317 tgagcttgtcggtccagca 1299
>dbj|AK072071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L16, full insert sequence Length = 2201 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 1893 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 1834 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 1833 tgagcttgtcggtccagca 1815
>dbj|AK069937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038F19, full insert sequence Length = 1293 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 979 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 920 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 919 tgagcttgtcggtccagca 901
>gb|AY105690.1| Zea mays PCO065072 mRNA sequence Length = 1632 Score = 52.0 bits (26), Expect = 8e-04 Identities = 40/45 (88%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcatt 128 ||||||||||||||||||||| ||||| || ||||| ||||||| Sbjct: 1369 tcaattgctatctgtgaagtctgcgtcaatgacatccccatcatt 1325
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 7990433 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 7990374 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 7990373 tgagcttgtcggtccagca 7990355
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 52.0 bits (26), Expect = 8e-04 Identities = 66/79 (83%), Gaps = 3/79 (3%) Strand = Plus / Plus Query: 84 tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140 ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| || Sbjct: 9618 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 9677 Query: 141 tgagcttgttgatccagca 159 ||||||||| | ||||||| Sbjct: 9678 tgagcttgtcggtccagca 9696
>gb|AC132164.1| Drosophila pseudoobscura FOSMID DPSF1-548A11 (Children's Hospital Oakland Research Institute Drosophila pseudoobscura FOSMID Library) complete sequence Length = 42098 Score = 42.1 bits (21), Expect = 0.73 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cagnagagccagcaccaccagcac 208 ||| |||||||||||||||||||| Sbjct: 15702 cagcagagccagcaccaccagcac 15679
>gb|BT024111.1| Zea mays clone EL01N0516B01 mRNA sequence Length = 2060 Score = 42.1 bits (21), Expect = 0.73 Identities = 35/40 (87%) Strand = Plus / Minus Query: 89 tgctatctgtgaagtccgcgtcgataacatctncatcatt 128 ||||||||||||||||||| || || ||||| ||||||| Sbjct: 1841 tgctatctgtgaagtccgcatcaatgacatccccatcatt 1802
>emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c15, COMPLETE SEQUENCE Length = 126536 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 catcctcaacctagaatgcca 29 ||||||||||||||||||||| Sbjct: 110581 catcctcaacctagaatgcca 110601
>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence Length = 175586 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtatcactcaccatgatcc 71 |||||||||||||||||||| Sbjct: 43788 tgtatcactcaccatgatcc 43807
>gb|AC079757.8| Homo sapiens BAC clone RP11-109N2 from 7, complete sequence Length = 13464 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tcagaatagaactcaggtctatgt 54 ||||||| |||||||||||||||| Sbjct: 11341 tcagaattgaactcaggtctatgt 11318
>gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 map q31-q35, complete sequence Length = 115948 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ctcagaatagaactcaggtc 49 |||||||||||||||||||| Sbjct: 3966 ctcagaatagaactcaggtc 3947
>gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, complete sequence Length = 218180 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tcagaatagaactcaggtct 50 |||||||||||||||||||| Sbjct: 112410 tcagaatagaactcaggtct 112391
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccagcaccaccagcactag 211 |||||||||||||||||||| Sbjct: 1000007 gccagcaccaccagcactag 1000026
>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence Length = 172583 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtatcactcaccatgatcc 71 |||||||||||||||||||| Sbjct: 157554 tgtatcactcaccatgatcc 157573 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,470,994 Number of Sequences: 3902068 Number of extensions: 1470994 Number of successful extensions: 97209 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 97168 Number of HSP's gapped (non-prelim): 67 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)