ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61k24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016772.1| Zea mays clone Contig605 mRNA sequence 52 8e-04
2gb|AY224466.1| Oryza sativa (japonica cultivar-group) isolate 23... 52 8e-04
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
4dbj|AK121949.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
5dbj|AK119535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
6dbj|AK072071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
7dbj|AK069937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
8gb|AY105690.1| Zea mays PCO065072 mRNA sequence 52 8e-04
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 8e-04
10emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa... 52 8e-04
11gb|AC132164.1| Drosophila pseudoobscura FOSMID DPSF1-548A11 (Ch... 42 0.73
12gb|BT024111.1| Zea mays clone EL01N0516B01 mRNA sequence 42 0.73
13emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c1... 42 0.73
14gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, co... 40 2.9
15gb|AC079757.8| Homo sapiens BAC clone RP11-109N2 from 7, complet... 40 2.9
16gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 ... 40 2.9
17gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, comp... 40 2.9
18gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 2.9
19gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, comp... 40 2.9 
>gb|BT016772.1| Zea mays clone Contig605 mRNA sequence
          Length = 1938

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcatt 128
            |||||||||||||||||||||||| || || |||||  |||||||
Sbjct: 1682 tcaattgctatctgtgaagtccgcatcaatgacatccccatcatt 1638
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>gb|AY224466.1| Oryza sativa (japonica cultivar-group) isolate 23949 heat
            shock-related protein mRNA, partial cds
          Length = 1257

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
            ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 1257 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 1198

                               
Query: 141  tgagcttgttgatccagca 159
            ||||||||| | |||||||
Sbjct: 1197 tgagcttgtcggtccagca 1179
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                           
Query: 84      tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
               ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 7990552 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 7990493

                                  
Query: 141     tgagcttgttgatccagca 159
               ||||||||| | |||||||
Sbjct: 7990492 tgagcttgtcggtccagca 7990474
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>dbj|AK121949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107J07, full
            insert sequence
          Length = 2462

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
            ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 2148 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 2089

                               
Query: 141  tgagcttgttgatccagca 159
            ||||||||| | |||||||
Sbjct: 2088 tgagcttgtcggtccagca 2070
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>dbj|AK119535.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B03, full
            insert sequence
          Length = 1667

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
            ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 1377 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 1318

                               
Query: 141  tgagcttgttgatccagca 159
            ||||||||| | |||||||
Sbjct: 1317 tgagcttgtcggtccagca 1299
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>dbj|AK072071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L16, full
            insert sequence
          Length = 2201

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
            ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 1893 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 1834

                               
Query: 141  tgagcttgttgatccagca 159
            ||||||||| | |||||||
Sbjct: 1833 tgagcttgtcggtccagca 1815
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>dbj|AK069937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038F19, full
           insert sequence
          Length = 1293

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                       
Query: 84  tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
           ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 979 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 920

                              
Query: 141 tgagcttgttgatccagca 159
           ||||||||| | |||||||
Sbjct: 919 tgagcttgtcggtccagca 901
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>gb|AY105690.1| Zea mays PCO065072 mRNA sequence
          Length = 1632

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcatt 128
            ||||||||||||||||||||| ||||| || |||||  |||||||
Sbjct: 1369 tcaattgctatctgtgaagtctgcgtcaatgacatccccatcatt 1325
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                           
Query: 84      tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
               ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 7990433 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 7990374

                                  
Query: 141     tgagcttgttgatccagca 159
               ||||||||| | |||||||
Sbjct: 7990373 tgagcttgtcggtccagca 7990355
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>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 153111

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 66/79 (83%), Gaps = 3/79 (3%)
 Strand = Plus / Plus

                                                                        
Query: 84   tcaattgctatctgtgaagtccgcgtcgataacatctncatcattgggtccctttcc--- 140
            ||||||||| || ||||| ||||| || ||||||||| ||||||| |||||||| ||   
Sbjct: 9618 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtcccttaccgcc 9677

                               
Query: 141  tgagcttgttgatccagca 159
            ||||||||| | |||||||
Sbjct: 9678 tgagcttgtcggtccagca 9696
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>gb|AC132164.1| Drosophila pseudoobscura  FOSMID DPSF1-548A11 (Children's Hospital
             Oakland Research Institute Drosophila pseudoobscura FOSMID
             Library) complete sequence
          Length = 42098

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   cagnagagccagcaccaccagcac 208
             ||| ||||||||||||||||||||
Sbjct: 15702 cagcagagccagcaccaccagcac 15679
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>gb|BT024111.1| Zea mays clone EL01N0516B01 mRNA sequence
          Length = 2060

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 89   tgctatctgtgaagtccgcgtcgataacatctncatcatt 128
            ||||||||||||||||||| || || |||||  |||||||
Sbjct: 1841 tgctatctgtgaagtccgcatcaatgacatccccatcatt 1802
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>emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c15, COMPLETE SEQUENCE
          Length = 126536

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      catcctcaacctagaatgcca 29
              |||||||||||||||||||||
Sbjct: 110581 catcctcaacctagaatgcca 110601
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>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence
          Length = 175586

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tgtatcactcaccatgatcc 71
             ||||||||||||||||||||
Sbjct: 43788 tgtatcactcaccatgatcc 43807
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>gb|AC079757.8| Homo sapiens BAC clone RP11-109N2 from 7, complete sequence
          Length = 13464

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    tcagaatagaactcaggtctatgt 54
             ||||||| ||||||||||||||||
Sbjct: 11341 tcagaattgaactcaggtctatgt 11318
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>gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 map q31-q35,
            complete sequence
          Length = 115948

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   ctcagaatagaactcaggtc 49
            ||||||||||||||||||||
Sbjct: 3966 ctcagaatagaactcaggtc 3947
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>gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, complete sequence
          Length = 218180

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     tcagaatagaactcaggtct 50
              ||||||||||||||||||||
Sbjct: 112410 tcagaatagaactcaggtct 112391
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 192     gccagcaccaccagcactag 211
               ||||||||||||||||||||
Sbjct: 1000007 gccagcaccaccagcactag 1000026
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>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence
          Length = 172583

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tgtatcactcaccatgatcc 71
              ||||||||||||||||||||
Sbjct: 157554 tgtatcactcaccatgatcc 157573


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,470,994
Number of Sequences: 3902068
Number of extensions: 1470994
Number of successful extensions: 97209
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 97168
Number of HSP's gapped (non-prelim): 67
length of query: 225
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 203
effective length of database: 17,147,199,772
effective search space: 3480881553716
effective search space used: 3480881553716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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