ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h... 57 2e-08
2CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val... 52 6e-07
3CD48A_ARATH (P54609) Cell division control protein 48 homolog A ... 50 1e-06
4CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog 50 2e-06
5CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ... 49 4e-06
6TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase h... 46 3e-05
7TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h... 44 1e-04
8TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER... 42 6e-04
9TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER... 42 6e-04
10TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T... 42 6e-04
11TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T... 42 6e-04
12TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T... 41 8e-04
13CDC48_YEAST (P25694) Cell division control protein 48 30 1.3

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 26/30 (86%), Positives = 26/30 (86%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAGT 97
           RKYQAFAQTLQQSRGFGSEFRFPD P   T
Sbjct: 756 RKYQAFAQTLQQSRGFGSEFRFPDAPTGTT 785



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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPD 115
           RKYQAFAQTLQQSRGFGSEFRFP+
Sbjct: 758 RKYQAFAQTLQQSRGFGSEFRFPE 781



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>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/53 (49%), Positives = 29/53 (54%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAGTXXXXXXXXXXXXXXXXXXXDLYS 28
           RKYQAFAQTLQQSRGFGSEFRF +   +G                    DLY+
Sbjct: 757 RKYQAFAQTLQQSRGFGSEFRFENSAGSGATTGVADPFATSAAAAGDDDDLYN 809



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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAGT 97
           RKYQAFAQTLQQSRGFG+EFRF D     T
Sbjct: 756 RKYQAFAQTLQQSRGFGTEFRFADTSGGAT 785



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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 23/29 (79%), Positives = 23/29 (79%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAG 100
           RKYQAFAQTLQQSRGFGSEFRF      G
Sbjct: 757 RKYQAFAQTLQQSRGFGSEFRFDSTAGVG 785



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>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFP-DQPXAG 100
           RKY+ FAQTLQQSRGFG+ F+FP + P AG
Sbjct: 762 RKYEMFAQTLQQSRGFGNNFKFPGEAPSAG 791



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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQ 112
           RKY+ FAQTLQQSRGFG+ F+FP +
Sbjct: 764 RKYEMFAQTLQQSRGFGNNFKFPGE 788



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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAG 100
           RKY+ FAQTLQQSRGFGS FRFP     G
Sbjct: 752 RKYEMFAQTLQQSRGFGS-FRFPSGNQGG 779



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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAG 100
           RKY+ FAQTLQQSRGFGS FRFP     G
Sbjct: 752 RKYEMFAQTLQQSRGFGS-FRFPSGNQGG 779



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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAG 100
           RKY+ FAQTLQQSRGFGS FRFP     G
Sbjct: 752 RKYEMFAQTLQQSRGFGS-FRFPSGNQGG 779



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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAG 100
           RKY+ FAQTLQQSRGFGS FRFP     G
Sbjct: 752 RKYEMFAQTLQQSRGFGS-FRFPSGNQGG 779



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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFP 118
           RKY+ FAQTLQQSRGFGS FRFP
Sbjct: 753 RKYEMFAQTLQQSRGFGS-FRFP 774



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>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 186 RKYQAFAQTLQQSRGFGSEFRFPDQPXAGT 97
           R+Y+A++Q ++ SRG  S F F D P   T
Sbjct: 775 RRYEAYSQQMKASRGQFSNFNFNDAPLGTT 804


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,879,734
Number of Sequences: 219361
Number of extensions: 139314
Number of successful extensions: 303
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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