ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY065971.1| Triticum aestivum phosphoethanolamine methyltrans... 285 5e-74
2ref|XM_475841.1| Oryza sativa (japonica cultivar-group), predic... 127 3e-26
3gb|AY103779.1| Zea mays PCO126548 mRNA sequence 127 3e-26
4gb|AY626156.3| Zea mays putative phosphoethanolamine N-methyltra... 119 7e-24
5gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 111 2e-21
6gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 111 2e-21
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
8gb|AY551100.1| Oryza sativa (indica cultivar-group) phosphoethan... 68 2e-08
9dbj|AK069137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
10ref|NM_192178.1| Oryza sativa (japonica cultivar-group), predic... 66 9e-08
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
12dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
13dbj|AK102037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
14gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's H... 48 0.021
15dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 44 0.32
16emb|Z35641.2|CEC38H2 Caenorhabditis elegans Cosmid C38H2, comple... 42 1.3
17gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete seq... 42 1.3
18gb|AC008285.7| Drosophila melanogaster clone BACR31P16, complete... 40 5.0
19gb|AE007294.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 5.0
20gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosom... 40 5.0
21ref|XM_757246.1| Ustilago maydis 521 hypothetical protein (UM061... 40 5.0
22emb|AL953854.21| Human DNA sequence from clone RP11-211P14 on ch... 40 5.0
23emb|BX664730.2| Human DNA sequence from clone RP11-118H15 on chr... 40 5.0
24emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chr... 40 5.0
25emb|AL954685.6| Human DNA sequence from clone RP11-237M21 on chr... 40 5.0
26emb|AL953883.5| Human DNA sequence from clone RP11-246P17 on chr... 40 5.0
27emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chro... 40 5.0
28emb|AL353791.7| Human DNA sequence from clone RP11-475B17 on chr... 40 5.0
29emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.0
30gb|AC007995.23| Mus musculus, clone RP23-266E9, complete sequence 40 5.0
31emb|AL683804.15| Mouse DNA sequence from clone RP23-17F2 on chro... 40 5.0
32dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 5.0
33gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, comp... 40 5.0
34ref|NM_143309.1| Drosophila melanogaster CG13972-RA (CG13972), mRNA 40 5.0
35gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, comp... 40 5.0
36gb|AY194228.1| Enterobacter cloacae succinate dehydrogenase cyto... 40 5.0
37gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, r... 40 5.0
38gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Ca... 40 5.0
39gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99... 40 5.0
40dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.0
41emb|AL591855.11| Human DNA sequence from clone RP11-4C12 on chro... 40 5.0

>gb|AY065971.1| Triticum aestivum phosphoethanolamine methyltransferase mRNA,
            complete cds
          Length = 1782

 Score =  285 bits (144), Expect = 5e-74
 Identities = 199/214 (92%), Gaps = 5/214 (2%)
 Strand = Plus / Minus

                                                                        
Query: 164  gcaccgatcctctttatttaattcttaaccgaagccgaagccgctctgcttccggatcat 223
            |||||||||||||||||||| |||||||    | | ||||| ||||||||||||||||||
Sbjct: 1635 gcaccgatcctctttattta-ttcttaat---aacagaagcggctctgcttccggatcat 1580

                                                                        
Query: 224  cgcgtagcgtggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 283
            |||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 cgcgtc-cacggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 1521

                                                                        
Query: 284  cttctgctcgccggcggagctccgcttcagcttcgcgctccacccgttgacgatgtcgtc 343
            ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1520 cttctgctcgccggcagagctccgcttcagcttcgcgctccagccgttgacgatgtcgtc 1461

                                              
Query: 344  gtagtcctcctggctgaagtccgccaggaaggcc 377
            ||||||||||||| ||||||||||||||||||||
Sbjct: 1460 gtagtcctcctgggtgaagtccgccaggaaggcc 1427



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    cacgttacaaagncgagtctcgctcgtcacataacaaagttcagggaacacacagcacgt 60
            |||||||||||| ||||||||||||||||||  |||| ||||||| |    |||  ||||
Sbjct: 1742 cacgttacaaag-cgagtctcgctcgtcacagtacaa-gttcaggaat---acaatacgt 1688

                                                     
Query: 61   acgtacacatcat--tatcttacagatccgggtgcccggcc 99
            |||||||||| ||  ||||||||||||||||||||||||||
Sbjct: 1687 acgtacacattatcttatcttacagatccgggtgcccggcc 1647



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>ref|XM_475841.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1488

 Score =  127 bits (64), Expect = 3e-26
 Identities = 103/116 (88%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagcttcgcg 320
            ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 1484 ttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagcttcgcg 1425

                                                                    
Query: 321  ctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgccaggaaggc 376
             |||| ||||| || ||||| ||||||||||||||| ||||||| |||| ||||||
Sbjct: 1424 ttccagccgttcacaatgtcatcgtagtcctcctgggtgaagtctgccatgaaggc 1369



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>gb|AY103779.1| Zea mays PCO126548 mRNA sequence
          Length = 2333

 Score =  127 bits (64), Expect = 3e-26
 Identities = 109/124 (87%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 309
            ||||| |||||||||| || ||||||| ||||||| ||||||||||||| |||||||| |
Sbjct: 1913 ggccaaatcacttggtggcaatgaacaacccccacctctgctcgccggcagagctccgtt 1854

                                                                        
Query: 310  tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgcca 369
            ||||||||||| |||| || || || |||||||| |||||||||||| ||||||| ||||
Sbjct: 1853 tcagcttcgcgttccagccattcacaatgtcgtcatagtcctcctgggtgaagtctgcca 1794

                
Query: 370  ggaa 373
            ||||
Sbjct: 1793 ggaa 1790



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>gb|AY626156.3| Zea mays putative phosphoethanolamine N-methyltransferase (PEAMT)
            mRNA, complete cds
          Length = 1806

 Score =  119 bits (60), Expect = 7e-24
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 309
            ||||| |||||||||| || ||||||| ||||||| ||||||| ||| | |||||||| |
Sbjct: 1647 ggccaaatcacttggtggcaatgaacaacccccacctctgctcaccgccagagctccgtt 1588

                                                                        
Query: 310  tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgcca 369
            ||||||||||| |||| ||||| || |||||||| |||||||||||| ||||||| ||||
Sbjct: 1587 tcagcttcgcgttccagccgttcacaatgtcgtcatagtcctcctgggtgaagtctgcca 1528

                
Query: 370  ggaa 373
            ||||
Sbjct: 1527 ggaa 1524



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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                         
Query: 256   atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 315
             |||| ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 14613 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 14672

                                                     
Query: 316   tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 355
             ||||| |||| ||||| || ||||| ||||||||||||||
Sbjct: 14673 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 14712



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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
             complete sequence
          Length = 166218

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                         
Query: 256   atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 315
             |||| ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 40454 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 40513

                                                     
Query: 316   tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 355
             ||||| |||| ||||| || ||||| ||||||||||||||
Sbjct: 40514 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 40553



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 256      atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 315
                |||| ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 27008031 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 27008090

                                                        
Query: 316      tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 355
                ||||| |||| ||||| || ||||| ||||||||||||||
Sbjct: 27008091 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 27008130



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>gb|AY551100.1| Oryza sativa (indica cultivar-group) phosphoethanolamine
            N-methyltransferase (PEAMT) mRNA, complete cds
          Length = 1986

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 256  atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 315
            ||||||||||||||||||||||||||||| ||||||| || || || ||||  |  || |
Sbjct: 1699 atcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagtt 1640

                                                          
Query: 316  tcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 361
            | ||  |||| || || || ||| ||||||||||||||||||||||
Sbjct: 1639 ttgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1594



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>dbj|AK069137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008P07, full
            insert sequence
          Length = 2069

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 256  atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 315
            ||||||||||||||||||||||||||||| ||||||| || || || ||||  |  || |
Sbjct: 1784 atcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagtt 1725

                                                          
Query: 316  tcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 361
            | ||  |||| || || || ||| ||||||||||||||||||||||
Sbjct: 1724 ttgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1679



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>ref|NM_192178.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1500

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                        
Query: 257  tcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagctt 316
            |||||||||||||||||||||||||||| ||||||| || || || ||||  |  || ||
Sbjct: 1500 tcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagttt 1441

                                                         
Query: 317  cgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 361
             ||  |||| || || || ||| ||||||||||||||||||||||
Sbjct: 1440 tgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1396



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 256      atcacttggtcgcgatgaacagcccccacttctgctc 292
                ||||||||||||||||||||||||||||| |||||||
Sbjct: 28737732 atcacttggtcgcgatgaacagcccccacctctgctc 28737696



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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431H09
          Length = 166886

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                   
Query: 256    atcacttggtcgcgatgaacagcccccacttctgctc 292
              ||||||||||||||||||||||||||||| |||||||
Sbjct: 120806 atcacttggtcgcgatgaacagcccccacctctgctc 120770



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>dbj|AK102037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081D06, full
            insert sequence
          Length = 3221

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 256  atcacttggtcgcgatgaacagcccccacttctgctc 292
            ||||||||||||||||||||||||||||| |||||||
Sbjct: 2984 atcacttggtcgcgatgaacagcccccacctctgctc 2948



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>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 157107

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 168   cgatcctctttatttaattcttaa 191
             ||||||||||||||||||||||||
Sbjct: 32346 cgatcctctttatttaattcttaa 32369



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 332     gacgatgtcgtcgtagtcctcc 353
               ||||||||||||||||||||||
Sbjct: 1075622 gacgatgtcgtcgtagtcctcc 1075601



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>emb|Z35641.2|CEC38H2 Caenorhabditis elegans Cosmid C38H2, complete sequence
          Length = 31950

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   cacttctgctcgccggcggag 302
             |||||||||||||||||||||
Sbjct: 15748 cacttctgctcgccggcggag 15768



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>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence
          Length = 536165

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    tgacgatgtcgtcgtagtcct 351
              |||||||||||||||||||||
Sbjct: 377931 tgacgatgtcgtcgtagtcct 377951



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    tgacgatgtcgtcgtagtcct 351
              |||||||||||||||||||||
Sbjct: 320695 tgacgatgtcgtcgtagtcct 320715



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>gb|AC008285.7| Drosophila melanogaster clone BACR31P16, complete sequence
          Length = 177084

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 307    gcttcagcttcgcgctccacccgt 330
              |||||||||||||| |||||||||
Sbjct: 169464 gcttcagcttcgcgatccacccgt 169487



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>gb|AE007294.1| Sinorhizobium meliloti 1021 plasmid pSymA section 100 of 121 of the
            complete plasmid sequence
          Length = 9983

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  cgaagccgaagccgctctgc 212
            ||||||||||||||||||||
Sbjct: 5324 cgaagccgaagccgctctgc 5305



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>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete
           sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 gtagtcctcctggctgaagt 363
           ||||||||||||||||||||
Sbjct: 711 gtagtcctcctggctgaagt 730



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>ref|XM_757246.1| Ustilago maydis 521 hypothetical protein (UM06192.1) partial mRNA
          Length = 3558

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ccaacacacggccacagcat 157
           ||||||||||||||||||||
Sbjct: 632 ccaacacacggccacagcat 651



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>emb|AL953854.21| Human DNA sequence from clone RP11-211P14 on chromosome 9 Contains a
             pseudogene similar to part of a vomeronasal 2 family
             protein and a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 157546

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   tctttatttaattcttaacc 193
             ||||||||||||||||||||
Sbjct: 41424 tctttatttaattcttaacc 41405



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>emb|BX664730.2| Human DNA sequence from clone RP11-118H15 on chromosome 9 Contains a
              novel gene, complete sequence
          Length = 171251

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    tctttatttaattcttaacc 193
              ||||||||||||||||||||
Sbjct: 158902 tctttatttaattcttaacc 158883



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>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains
           eight novel pseudogenes, two novel genes and three CpG
           islands, complete sequence
          Length = 181647

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 tctttatttaattcttaacc 193
           ||||||||||||||||||||
Sbjct: 548 tctttatttaattcttaacc 567



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>emb|AL954685.6| Human DNA sequence from clone RP11-237M21 on chromosome 9, complete
             sequence
          Length = 130124

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   tctttatttaattcttaacc 193
             ||||||||||||||||||||
Sbjct: 70560 tctttatttaattcttaacc 70579



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>emb|AL953883.5| Human DNA sequence from clone RP11-246P17 on chromosome 9, complete
             sequence
          Length = 102894

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   tctttatttaattcttaacc 193
             ||||||||||||||||||||
Sbjct: 81891 tctttatttaattcttaacc 81872



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>emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chromosome 9 Contains the
             5' end of the GDA gene for guanine deaminase and a CpG
             island, complete sequence
          Length = 131933

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   tcctctttatttaattctta 190
             ||||||||||||||||||||
Sbjct: 24338 tcctctttatttaattctta 24319



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>emb|AL353791.7| Human DNA sequence from clone RP11-475B17 on chromosome 9 Contains the 3'
              end of novel protein similar to contactin associated
              protein-like 3 (CNTNAP3) and a pseudogene similar to part
              of vomeronasal 2 family, complete sequence
          Length = 208233

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    tctttatttaattcttaacc 193
              ||||||||||||||||||||
Sbjct: 104698 tctttatttaattcttaacc 104717



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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   cgctgctcggcggccagatc 258
             ||||||||||||||||||||
Sbjct: 96941 cgctgctcggcggccagatc 96960



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>gb|AC007995.23| Mus musculus, clone RP23-266E9, complete sequence
          Length = 204193

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    gtagtcctcctggctgaagt 363
              ||||||||||||||||||||
Sbjct: 185351 gtagtcctcctggctgaagt 185370



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>emb|AL683804.15| Mouse DNA sequence from clone RP23-17F2 on chromosome 1 Contains  a
             SEC61 gamma subunit (Sec61g) pseudogene, a limb expression
             1 homolog (chicken) (Lix1) pseudogene, a novel pseudogene,
             the 5' end of the gene for an ortholog of human Ras
             association (RalGDS/AF-6) and pleckstrin homology domains
             1 RAPH1 and a CpG island, complete sequence
          Length = 198631

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    acatcattatcttacagatc 86
             ||||||||||||||||||||
Sbjct: 85216 acatcattatcttacagatc 85235



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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 233     tggcgtcgctgctcggcggc 252
               ||||||||||||||||||||
Sbjct: 1266679 tggcgtcgctgctcggcggc 1266698



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>gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, complete sequence
          Length = 142656

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    atcctctttatttaattctt 189
              ||||||||||||||||||||
Sbjct: 125275 atcctctttatttaattctt 125294



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>ref|NM_143309.1| Drosophila melanogaster CG13972-RA (CG13972), mRNA
          Length = 1347

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 307  gcttcagcttcgcgctccacccgt 330
            |||||||||||||| |||||||||
Sbjct: 1094 gcttcagcttcgcgatccacccgt 1071



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>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence
          Length = 154939

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   atcctctttatttaattctt 189
             ||||||||||||||||||||
Sbjct: 76263 atcctctttatttaattctt 76282



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>gb|AY194228.1| Enterobacter cloacae succinate dehydrogenase cytochrome b-556 subunit
            (sdhC), succinate dehydrogenase hydrophobic membrane
            anchor protein (sdhD), succinate dehydrogenase
            flavoprotein subunit (sdhA), and succinate dehydrogenase
            iron-sulfur protein (sdhB) genes, complete cds; and
            2-oxoglutarate dehydrogenase E1 component (sucA) gene,
            partial cds
          Length = 6771

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 279  ccccacttctgctcgccggcggag 302
            ||||||||||||||||||| ||||
Sbjct: 6123 ccccacttctgctcgccggaggag 6100



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>gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, region 98A-98B, BAC clone
             BACR15D01, complete sequence
          Length = 180499

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   gcttcagcttcgcgctccacccgt 330
             |||||||||||||| |||||||||
Sbjct: 30801 gcttcagcttcgcgatccacccgt 30824



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>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 109003

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 213   ttccggatcatcgcgtagcgtggc 236
             |||| |||||||||||||||||||
Sbjct: 92074 ttcctgatcatcgcgtagcgtggc 92051



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>gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99 of 118 of the
             complete sequence
          Length = 224910

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   gcttcagcttcgcgctccacccgt 330
             |||||||||||||| |||||||||
Sbjct: 79987 gcttcagcttcgcgatccacccgt 80010



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>dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-100N3, complete
              sequences
          Length = 159372

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    tcctctttatttaattctta 190
              ||||||||||||||||||||
Sbjct: 103987 tcctctttatttaattctta 104006



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>emb|AL591855.11| Human DNA sequence from clone RP11-4C12 on chromosome 9, complete
            sequence
          Length = 153214

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tctttatttaattcttaacc 193
            ||||||||||||||||||||
Sbjct: 6785 tctttatttaattcttaacc 6804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,083,836
Number of Sequences: 3902068
Number of extensions: 3083836
Number of successful extensions: 59285
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59092
Number of HSP's gapped (non-prelim): 191
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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