Clone Name | rbah61k16 |
---|---|
Clone Library Name | barley_pub |
>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6, complete sequence Length = 186793 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 26 aatactattttgtatttacaaca 48 ||||||||||||||||||||||| Sbjct: 116509 aatactattttgtatttacaaca 116487
>emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in linkage group 6, complete sequence Length = 222787 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 26 aatactattttgtatttacaaca 48 ||||||||||||||||||||||| Sbjct: 15065 aatactattttgtatttacaaca 15087
>emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in linkage group 5, complete sequence Length = 149707 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 aatactattttgtatttacaa 46 ||||||||||||||||||||| Sbjct: 53453 aatactattttgtatttacaa 53473
>ref|NM_212869.1| Danio rerio zgc:76966 (zgc:76966), mRNA Length = 2222 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ccatgcactgattattaagca 114 ||||||||||||||||||||| Sbjct: 1509 ccatgcactgattattaagca 1489
>gb|BC066744.1| Danio rerio zgc:76966, mRNA (cDNA clone MGC:76966 IMAGE:6525345), complete cds Length = 2222 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ccatgcactgattattaagca 114 ||||||||||||||||||||| Sbjct: 1509 ccatgcactgattattaagca 1489
>emb|Z95559.1|CEY41E3 Caenorhabditis elegans YAC Y41E3, complete sequence Length = 150641 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 gaacatgaataattgcagcaa 91 ||||||||||||||||||||| Sbjct: 119231 gaacatgaataattgcagcaa 119211
>gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosome 14, complete sequence Length = 143851 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 acaacattccacgctaaaac 62 |||||||||||||||||||| Sbjct: 119843 acaacattccacgctaaaac 119862
>emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chromosome 6, complete sequence Length = 118731 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tcataataatctttttatac 300 |||||||||||||||||||| Sbjct: 59203 tcataataatctttttatac 59184
>emb|CR697668.2|CNS0G19S Tetraodon nigroviridis full-length cDNA Length = 1405 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ataattgcagcaacaccatg 98 |||||||||||||||||||| Sbjct: 957 ataattgcagcaacaccatg 976
>emb|CR354596.12| Zebrafish DNA sequence from clone CH211-117K14 in linkage group 23, complete sequence Length = 172749 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ttaatactattttgtattta 43 |||||||||||||||||||| Sbjct: 164156 ttaatactattttgtattta 164137
>emb|AL646091.4| Mouse DNA sequence from clone RP23-101K9 on chromosome 11, complete sequence Length = 133477 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aacatgaataattgcagcaa 91 |||||||||||||||||||| Sbjct: 36604 aacatgaataattgcagcaa 36585
>gb|AF397167.1| Streptococcus mutans sdcC gene locus, complete sequence Length = 3350 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ctaaaatactaatagcactg 137 |||||||||||||||||||| Sbjct: 1707 ctaaaatactaatagcactg 1688
>emb|CR376729.7| Zebrafish DNA sequence from clone CH211-282K21 in linkage group 8, complete sequence Length = 39033 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 atgaataattgcagcaacac 94 |||||||||||||||||||| Sbjct: 14994 atgaataattgcagcaacac 14975
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ctaaaatactaatagcactg 137 |||||||||||||||||||| Sbjct: 1978573 ctaaaatactaatagcactg 1978554
>emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chromosome 14, complete sequence Length = 181740 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 acaacattccacgctaaaac 62 |||||||||||||||||||| Sbjct: 171573 acaacattccacgctaaaac 171554
>dbj|AP006347.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02G18, TM0334a, complete sequence Length = 77969 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ttaatactattttgtattta 43 |||||||||||||||||||| Sbjct: 21946 ttaatactattttgtattta 21965 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,673,555 Number of Sequences: 3902068 Number of extensions: 3673555 Number of successful extensions: 55826 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55790 Number of HSP's gapped (non-prelim): 36 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)