ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61k14 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 138 bits (347), Expect = 8e-33 Identities = 65/66 (98%), Positives = 66/66 (100%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 KKKVQTECASMPFDDQCTVL+KEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK Sbjct: 259 KKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 318 Query: 286 FETWEQ 269 FETWEQ Sbjct: 319 FETWEQ 324
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 88.6 bits (218), Expect = 7e-18 Identities = 42/65 (64%), Positives = 48/65 (73%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV E S F+DQC ++EAVNVSL NLLTYPFV+EGV GTL L GG+YDFV+G Sbjct: 184 KSKVLAESESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGS 243 Query: 286 FETWE 272 FE WE Sbjct: 244 FELWE 248
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 85.9 bits (211), Expect = 5e-17 Identities = 42/64 (65%), Positives = 46/64 (71%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KVQ E F DQCT +KEAVNVSL NLLTYPFV+EG+ TL L GGHYDFV+G Sbjct: 246 KAKVQGEHVDKCFADQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGHYDFVNGG 305 Query: 286 FETW 275 FE W Sbjct: 306 FELW 309
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 85.1 bits (209), Expect = 8e-17 Identities = 40/64 (62%), Positives = 46/64 (71%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV E DDQC + +KEAVNVSL NLLTYPFV++G+ N TL L GGHYDFV+G Sbjct: 254 KSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGT 313 Query: 286 FETW 275 FE W Sbjct: 314 FELW 317
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 85.1 bits (209), Expect = 8e-17 Identities = 40/64 (62%), Positives = 46/64 (71%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV E DDQC + +KEAVNVSL NLLTYPFV++G+ N TL L GGHYDFV+G Sbjct: 255 KSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGT 314 Query: 286 FETW 275 FE W Sbjct: 315 FELW 318
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 84.3 bits (207), Expect = 1e-16 Identities = 40/64 (62%), Positives = 46/64 (71%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV E DDQC + +KEAVNVSL NLLTYPFV++G+ N TL L GGHYDFV+G Sbjct: 255 KSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNKTLALKGGHYDFVNGT 314 Query: 286 FETW 275 FE W Sbjct: 315 FELW 318
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 84.0 bits (206), Expect = 2e-16 Identities = 40/64 (62%), Positives = 45/64 (70%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV E DDQC +KEAVNVSL NLLTYPFV++G+ N TL L GGHYDFV+G Sbjct: 255 KSKVVAEHNGTHLDDQCVQCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGT 314 Query: 286 FETW 275 FE W Sbjct: 315 FELW 318
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 83.6 bits (205), Expect = 2e-16 Identities = 39/64 (60%), Positives = 46/64 (71%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV +E F+DQC ++EAVNVSL NLLTYPFV+EG+ GTL L GG+YDFV G Sbjct: 261 KSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKGA 320 Query: 286 FETW 275 FE W Sbjct: 321 FELW 324
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 81.3 bits (199), Expect = 1e-15 Identities = 38/64 (59%), Positives = 45/64 (70%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV+ + PF + CT +KEAVN SL NLLTYPFV+EG+ N TL L GG+YDFV G Sbjct: 253 KAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGS 312 Query: 286 FETW 275 FE W Sbjct: 313 FELW 316
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 80.1 bits (196), Expect = 3e-15 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV+ C ++ F D CT +KEAVNVSL NLLTYPFV++ + N L L G HYDFV+G Sbjct: 115 KSKVKANCNNLEFADLCTKCEKEAVNVSLGNLLTYPFVRDALVNKKLSLKGAHYDFVNGA 174 Query: 286 FETW 275 F+ W Sbjct: 175 FDLW 178
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 79.7 bits (195), Expect = 3e-15 Identities = 38/64 (59%), Positives = 46/64 (71%) Frame = -2 Query: 466 KKKVQTECASMPFDDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 K KV E + F +QCT +KEAVNVSL NLLTYPFV++G+ TL L GG+YDFV+G Sbjct: 244 KHKVLAEHGNATFAEQCTHCEKEAVNVSLGNLLTYPFVRDGLVKKTLALQGGYYDFVNGS 303 Query: 286 FETW 275 FE W Sbjct: 304 FELW 307
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 35.8 bits (81), Expect = 0.056 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = -2 Query: 400 EAVNVSLQ--NLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 E +N LQ NLL+Y F++E V N LK+ G HY +G+ Sbjct: 155 ERLNARLQLNNLLSYDFIQERVINNELKIFGWHYIIETGR 194
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 35.0 bits (79), Expect = 0.095 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -2 Query: 427 DDQCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 DD +L E V ++NL TYP V+ + G L++ G Y+ SG+ Sbjct: 144 DDLVEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESGE 190
>ACCD_PICAB (O47039) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 319 Score = 34.7 bits (78), Expect = 0.12 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 AL+ + D+ L+YV + S TGG + F + GD ++ G ++D+ +G Sbjct: 220 ALYIPQKDNRLLYVSILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKIVIDQTLG 276 Query: 368 QEVLE 382 Q+V+E Sbjct: 277 QKVIE 281
>ACCD_PINTH (P52769) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 321 Score = 34.3 bits (77), Expect = 0.16 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 AL+ H+ + L+Y+ + S TGG + F + GD ++ G ++++ +G Sbjct: 220 ALYIHQKEKKLLYISILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKRVIEQTLG 276 Query: 368 QEVLE 382 Q+V+E Sbjct: 277 QKVIE 281
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 32.7 bits (73), Expect = 0.47 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 400 EAVNVSLQ--NLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 287 E +N LQ NLL+Y F++E + LK+ G HY +G+ Sbjct: 155 ERLNARLQLNNLLSYDFIQEKASKNELKIFGWHYIIETGR 194
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 30.4 bits (67), Expect = 2.3 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 10/53 (18%) Frame = +2 Query: 323 LEGSVGHTLLDERVGQEVLE-------GHVDGLLLQDGALVIE-RH--GGALS 451 LEG+VG+ +D GQEVL HV G L+ ALV++ RH GG +S Sbjct: 126 LEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLDLRHCTGGQVS 178
>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]| Length = 1257 Score = 30.0 bits (66), Expect = 3.1 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 20/98 (20%) Frame = +2 Query: 194 HSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHT-------LL 352 H+ ++ +++ +L G ++ ELAGD++V+ DE+E G T ++ Sbjct: 545 HNFAAEGFVVHNTTLSDQLLAGAGMISE--ELAGDQLVLDFDEMEQERGITIDAANVSMV 602 Query: 353 DERVGQEVL------EGHVD-------GLLLQDGALVI 427 E G+E L GHVD + DGA+V+ Sbjct: 603 HEYEGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVV 640
>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 203 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 117 D A+PW +P I + PDGP+ I H + Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182
>I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (IL-18BP)| (Interferon gamma-inducing factor-binding protein) Length = 191 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -3 Query: 213 SSDRCECNAMGVRTRYCPVLDAGWPDVNLP*AIEPFFLHHFLTRNCTA 70 S D C + V T+ P LD WP+ +P L+ LT +CTA Sbjct: 41 SKDPCSSWSPAVPTKQYPALDVIWPEKEVP-------LNGTLTLSCTA 81
>LPSBP_PERAM (P26305) Hemolymph lipopolysaccharide-binding protein precursor| (LPS-binding protein) (LPS-BP) Length = 256 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 Query: 412 VLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFET 278 ++ E + LQNL + EG TN +G H FV G+F T Sbjct: 157 IINSEDESKVLQNLFSKVTKTEGATNNDYIFIGIHDRFVEGEFIT 201
>ACCD_CHLVU (P56293) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 411 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 ALH H++ L+Y+ + S TGG + F + GD + L G G ++++ + Sbjct: 192 ALHIHQNCAKLLYISVLTSPTTGG---VTASFAMLGDLLFAEPKALIGFAGRRVIEQTLQ 248 Query: 368 QEV 376 +++ Sbjct: 249 EQL 251
>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor| Length = 226 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -2 Query: 322 LVGGHYDFVSGKFETWEQ*IFPTG*LRHIQTYIYQDIVRSM 200 ++ G YD + TW + +FPTG Q Y+ Q + S+ Sbjct: 163 MIQGSYDLHGRRLHTWNRIVFPTGAPPAKQRYLVQLTITSL 203
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -2 Query: 421 QCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 272 + + +E V L NL T+P V+ + G + L G YD SG ++ Sbjct: 144 KAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGWVYDIESGSIAAFD 193
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -2 Query: 421 QCTVLKKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 272 + + +E V L NL T+P V+ + G + L G YD SG ++ Sbjct: 144 KAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGWVYDIESGSIAAFD 193
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = +3 Query: 315 PTSLRVPLVTPSLTNG*VKRFWRDTLTA----SFFRTVHWSSKGMEAHSVCT 458 P L++P +T ++ +++W + LTA S RT +W SK + H + T Sbjct: 390 PEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPT 441
>RPOZ_VIBPA (Q87TB0) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 200 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADEL-EGSVGHTLLDERVGQEV 376 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDALVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 377 LE 382 E Sbjct: 73 QE 74
>RPOZ_VIBVY (Q7MPX0) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 200 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADEL-EGSVGHTLLDERVGQEV 376 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDSLVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 377 LE 382 E Sbjct: 73 QE 74
>RPOZ_VIBVU (Q8DDV5) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 200 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADEL-EGSVGHTLLDERVGQEV 376 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDSLVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 377 LE 382 E Sbjct: 73 QE 74
>ACCD_EPIVI (P30064) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 493 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 AL ++S+ L+YV + S TGG + F + GD ++ + G ++++ + Sbjct: 392 ALFDYQSNKKLLYVSILTSPTTGG---VTASFGMLGDIIIAEPNSYIAFAGKRVIEQTLH 448 Query: 368 QEVLEG 385 + V EG Sbjct: 449 KIVPEG 454
>ACCD_CUSRE (P31562) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 497 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 AL+ ++S+ L+YV + S GG + F + GD ++V G ++++ + Sbjct: 379 ALYDYQSNKRLVYVSILTSPTAGG---VTASFGMLGDIIIVEPRAYVAFAGKRVIEQTLN 435 Query: 368 QEVLEGHVDG-LLLQDGA--LVIERH 436 Q + + L G L+I RH Sbjct: 436 QTIPNDSQEAEFLFHKGLFDLIIPRH 461
>NADA_LISIN (Q929Z0) Quinolinate synthetase A| Length = 366 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 257 GEDLLLPCFELAGDEVVVAADELEGSV 337 GEDL +PC DEVV AD + S+ Sbjct: 36 GEDLFIPCHHYQKDEVVPFADAIGDSL 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,202,228 Number of Sequences: 219361 Number of extensions: 1378170 Number of successful extensions: 4602 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4601 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
