ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61k14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, compl... 860 0.0
2ref|NM_192260.1| Oryza sativa (japonica cultivar-group), predic... 167 4e-38
3dbj|AK099825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
4dbj|AK060890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
5gb|AF182806.1|AF182806 Oryza sativa carbonic anhydrase 3 mRNA, c... 167 4e-38
6gb|U08404.1|OSU08404 Oryza sativa chloroplast carbonic anhydrase... 167 4e-38
7gb|AY109272.1| Zea mays PCO064414 mRNA sequence 137 4e-29
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
9dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
10dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
11dbj|AB016283.1| Oryza sativa gene for carbonic anhydrase, comple... 125 1e-25
12gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mR... 117 3e-23
13gb|U19739.1|UPU19739 Urochloa panicoides carbonic anhydrase 2 mR... 117 3e-23
14gb|U08403.1|ZMU08403 Zea mays Golden Bantam carbonic anhydrase m... 96 1e-16
15gb|U08401.1|ZMU08401 Zea mays carbonic anhydrase mRNA, complete cds 96 1e-16
16gb|AY109373.1| Zea mays CL2331_1 mRNA sequence 92 2e-15
17gb|M95073.1|MZEORFN Zea mays putative carbonic anhydrase homolog... 90 8e-15
18emb|AL929442.9| Mouse DNA sequence from clone RP23-95M20 on chro... 42 1.6
19gb|AF140060.1|BNFADD1 Brassica napus FAD31 gene, FAD31-DN allele... 42 1.6
20gb|AF056572.1| Brassica rapa cultivar R500 FAD31 gene, FAD31-R50... 42 1.6
21dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.6
22ref|XM_467687.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
23ref|NM_196639.1| Oryza sativa (japonica cultivar-group) hypothet... 40 6.3
24gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6... 40 6.3
25emb|Z99297.1|HS262D12 Human DNA sequence from clone RP1-262D12 o... 40 6.3
26emb|AL161799.19| Human DNA sequence from clone RP11-177H22 on ch... 40 6.3
27emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M... 40 6.3
28emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 6.3
29emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 6.3
30emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 6.3
31emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in... 40 6.3
32gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
33gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell ... 40 6.3
34gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell ... 40 6.3
35gb|AC021856.7| Homo sapiens BAC clone RP11-553E5 from 4, complet... 40 6.3
36gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-8... 40 6.3
37gb|U70770.1|DMU70770 Drosophila melanogaster furrowed (fw) gene,... 40 6.3
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
40dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
41gb|AC012170.6|AC012170 Homo sapiens chromosome 15 clone RP11-562... 40 6.3
42gb|AC018887.10| Homo sapiens BAC clone RP11-419E14 from 2, compl... 40 6.3
43gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, comple... 40 6.3
44dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 6.3
45dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
46dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
47dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
48dbj|AK108113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
49emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
50gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 ... 40 6.3
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
52emb|AL713980.9| Human DNA sequence from clone XXbac-81I18 on chr... 40 6.3 
>gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, complete cds
          Length = 1529

 Score =  860 bits (434), Expect = 0.0
 Identities = 458/467 (98%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgaaaatattatattaaacttatatatgatgtctttcgatcacaagnacgatcaaattat 60
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1485 tgaaaatattatattaaacttatatatgatgtctttcgatcacaag-acgatcaaattat 1427

                                                                        
Query: 61   gcatcacatagcagtacaattcctcgtcagaaaatggtgaagnnnnnnnggttctattgc 120
            ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 1426 gcatcacatagcagtacaattcctcgtcagaaaatggtgaagaaaaaaaggttctattgc 1367

                                                                        
Query: 121  ttatggcaaattcacatcgggccatccggcatccagtactggacaataacgggtacgcac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ttatggcaaattcacatcgggccatccggcatccagtactggacaataacgggtacgcac 1307

                                                                        
Query: 181  tcccatggcattgcattcacatcgatcggacgatatcttgatatatgtacgtttgtatat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 tcccatggcattgcattcacatcgatcggacgatatcttgatatatgtacgtttgtatat 1247

                                                                        
Query: 241  gtcggagttaaccggtggggaagatttactgctcccatgtttcgaacttgccggagacga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gtcggagttaaccggtggggaagatttactgctcccatgtttcgaacttgccggagacga 1187

                                                                        
Query: 301  agtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgacgaacg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 agtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgacgaacg 1127

                                                                        
Query: 361  ggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacggtgcact 420
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1126 ggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacggtgcact 1067

                                                           
Query: 421  ggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 1020
to top
>ref|NM_192260.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 819

 Score =  167 bits (84), Expect = 4e-38
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 797 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 738

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           |||||||||||||||||||||  ||||||||  |||||   ||| ||||||||||||| |
Sbjct: 737 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 678

                                                                       
Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 677 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 618
to top
>dbj|AK099825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G17, full
           insert sequence
          Length = 1163

 Score =  167 bits (84), Expect = 4e-38
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 847 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 788

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           |||||||||||||||||||||  ||||||||  |||||   ||| ||||||||||||| |
Sbjct: 787 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 728

                                                                       
Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 727 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 668
to top
>dbj|AK060890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B12, full
           insert sequence
          Length = 1165

 Score =  167 bits (84), Expect = 4e-38
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 846 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 787

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           |||||||||||||||||||||  ||||||||  |||||   ||| ||||||||||||| |
Sbjct: 786 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 727

                                                                       
Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 726 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 667
to top
>gb|AF182806.1|AF182806 Oryza sativa carbonic anhydrase 3 mRNA, complete cds
          Length = 1169

 Score =  167 bits (84), Expect = 4e-38
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 841 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 782

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           |||||||||||||||||||||  ||||||||  |||||   ||| ||||||||||||| |
Sbjct: 781 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 722

                                                                       
Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 721 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 662
to top
>gb|U08404.1|OSU08404 Oryza sativa chloroplast carbonic anhydrase mRNA, complete cds
          Length = 1148

 Score =  167 bits (84), Expect = 4e-38
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 832 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 773

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           |||||||||||||||||||||  ||||||||  |||||   ||| ||||||||||||| |
Sbjct: 772 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 713

                                                                       
Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 712 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 653
to top
>gb|AY109272.1| Zea mays PCO064414 mRNA sequence
          Length = 978

 Score =  137 bits (69), Expect = 4e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                       
Query: 291 ccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctcc 350
           ||||| ||||||||||||||| ||||||| ||||||||||| || |||| ||  || |||
Sbjct: 719 ccggacacgaagtcgtagtgggcgccgaccagcttgagggtccccttggccagcccttcc 660

                                                                       
Query: 351 ttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcagg 410
           | |||||| |||||||||  ||||||||  ||||||||||| ||||||||||||| ||||
Sbjct: 659 tggacgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctccagg 600

                                            
Query: 411 acggtgcactggtcatcgaaaggcatggaggcg 443
           | || ||||||||||||||| |||| |||||||
Sbjct: 599 atggagcactggtcatcgaagggcacggaggcg 567
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                            
Query: 288      ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
                |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 25698466 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 25698407

                                               
Query: 348      tccttgacgaacgggtaggtcaagaggttct 378
                |||||||||||||||||||||  ||||||||
Sbjct: 25698406 tccttgacgaacgggtaggtcttgaggttct 25698376



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 420      tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
                ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 25698144 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 25698097
to top
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0004A09
          Length = 158826

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                          
Query: 288    ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
              |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 145272 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 145213

                                             
Query: 348    tccttgacgaacgggtaggtcaagaggttct 378
              |||||||||||||||||||||  ||||||||
Sbjct: 145212 tccttgacgaacgggtaggtcttgaggttct 145182



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 420    tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
              ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 144950 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 144903
to top
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0039G05
          Length = 138429

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 930 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 871

                                          
Query: 348 tccttgacgaacgggtaggtcaagaggttct 378
           |||||||||||||||||||||  ||||||||
Sbjct: 870 tccttgacgaacgggtaggtcttgaggttct 840



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 420 tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
           ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 608 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 561
to top
>dbj|AB016283.1| Oryza sativa gene for carbonic anhydrase, complete cds
          Length = 8532

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                        
Query: 288  ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347
            |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 8047 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 7988

                                           
Query: 348  tccttgacgaacgggtaggtcaagaggttct 378
            |||||||||||||||||||||  ||||||||
Sbjct: 7987 tccttgacgaacgggtaggtcttgaggttct 7957



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 420  tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467
            ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 7725 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 7678
to top
>gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mRNA, complete cds
          Length = 1208

 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                       
Query: 296 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 355
           |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| ||
Sbjct: 864 gacgaagtcgtagtggccgccgaccagcttgagggagccgttggacacaccttccttcac 805

                                                                       
Query: 356 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacggt 415
             | |||||||||| |||||| |  ||||| ||||||||||||||||||| || || || 
Sbjct: 804 ccaggggtaggtcaggaggttgtacagggagacgttgacggcctccttctccaagatgga 745

                          
Query: 416 gcactggtcatcgaa 430
           ||||||||| |||||
Sbjct: 744 gcactggtcgtcgaa 730
to top
>gb|U19739.1|UPU19739 Urochloa panicoides carbonic anhydrase 2 mRNA, complete cds
          Length = 1034

 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                       
Query: 296 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 355
           |||||||||||||||||||||||| ||||||||||  ||||||| ||| || ||||| ||
Sbjct: 703 gacgaagtcgtagtggccgccgaccagcttgagggacccgttggacacgccttccttcac 644

                                                                       
Query: 356 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacggt 415
             | |||||||||| |||||| | |||||| |||||||| |||||||||| || || || 
Sbjct: 643 ccaggggtaggtcaggaggttgtagagggagacgttgactgcctccttctccaagatgga 584

                          
Query: 416 gcactggtcatcgaa 430
           |||||||||||||||
Sbjct: 583 gcactggtcatcgaa 569
to top
>gb|U08403.1|ZMU08403 Zea mays Golden Bantam carbonic anhydrase mRNA, complete cds
          Length = 2184

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           ||||||||||| |||||| ||  |||||||||||| |||||||| ||||||||||||| |
Sbjct: 671 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 612

                                       
Query: 408 aggacggtgcactggtcatcgaaaggca 435
           |||| || ||||||||||||||| ||||
Sbjct: 611 aggatggagcactggtcatcgaacggca 584



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                        
Query: 348  tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
            |||||||| || |||||| ||  |||||||||||| |||||||| ||||||||||||| |
Sbjct: 1277 tccttgaccaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 1218

                                        
Query: 408  aggacggtgcactggtcatcgaaaggca 435
            |||| || ||||||||||||||| ||||
Sbjct: 1217 aggatggagcactggtcatcgaacggca 1190



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 117/142 (82%)
 Strand = Plus / Minus

                                                                        
Query: 294  gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353
            ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 1934 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1875

                                                                        
Query: 354  acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413
            ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||  || | |
Sbjct: 1874 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1815

                                  
Query: 414  gtgcactggtcatcgaaaggca 435
            |  |||||||||||||| ||||
Sbjct: 1814 gaccactggtcatcgaacggca 1793
to top
>gb|U08401.1|ZMU08401 Zea mays carbonic anhydrase mRNA, complete cds
          Length = 1920

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                       
Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407
           ||||||||||| |||||| ||  |||||||||||| |||||||| ||||||||||||| |
Sbjct: 950 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 891

                                       
Query: 408 aggacggtgcactggtcatcgaaaggca 435
           |||| || ||||||||||||||| ||||
Sbjct: 890 aggatggagcactggtcatcgaacggca 863



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 294  gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353
            ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551

                                                                        
Query: 354  acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413
            ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||  || | |
Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491

                                  
Query: 414  gtgcactggtcatcgaaaggca 435
            | ||||||||||||||| ||||
Sbjct: 1490 gagcactggtcatcgaacggca 1469
to top
>gb|AY109373.1| Zea mays CL2331_1 mRNA sequence
          Length = 2552

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 294  gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353
            ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551

                                                                        
Query: 354  acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413
            ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||  || | |
Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491

                                  
Query: 414  gtgcactggtcatcgaaaggca 435
            | ||||||||||||||| ||||
Sbjct: 1490 gagcactggtcatcgaacggca 1469



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 397 cctccttcttcaggacggtgcactggtcatcgaaaggca 435
           ||||||||| ||||| || ||||||||||||||| ||||
Sbjct: 901 cctccttctccaggatggagcactggtcatcgaacggca 863
to top
>gb|M95073.1|MZEORFN Zea mays putative carbonic anhydrase homolog mRNA, partial cds
          Length = 210

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                       
Query: 294 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353
           ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 171 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 112

                                                                       
Query: 354 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413
           ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||  || | |
Sbjct: 111 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 52

                            
Query: 414 gtgcactggtcatcgaa 430
           | |||||||||||||||
Sbjct: 51  gagcactggtcatcgaa 35
to top
>emb|AL929442.9| Mouse DNA sequence from clone RP23-95M20 on chromosome 4, complete
              sequence
          Length = 176578

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      aatattatattaaacttatat 25
              |||||||||||||||||||||
Sbjct: 154336 aatattatattaaacttatat 154356
to top
>gb|AF140060.1|BNFADD1 Brassica napus FAD31 gene, FAD31-DN allele, partial sequence
          Length = 655

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 4   aaatattatattaaacttata 24
           |||||||||||||||||||||
Sbjct: 319 aaatattatattaaacttata 299
to top
>gb|AF056572.1| Brassica rapa cultivar R500 FAD31 gene, FAD31-R500 allele, partial
           cds
          Length = 1714

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 4   aaatattatattaaacttata 24
           |||||||||||||||||||||
Sbjct: 320 aaatattatattaaacttata 300
to top
>dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-212D19, complete
             sequence
          Length = 138197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 222   tatatgtacgtttgtatatgt 242
             |||||||||||||||||||||
Sbjct: 80852 tatatgtacgtttgtatatgt 80872
to top
>ref|XM_467687.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 ggccgccgacgagcttgagg 329
           ||||||||||||||||||||
Sbjct: 102 ggccgccgacgagcttgagg 121
to top
>ref|NM_196639.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0019M20.11), mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 ggccgccgacgagcttgagg 329
           ||||||||||||||||||||
Sbjct: 189 ggccgccgacgagcttgagg 208
to top
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete
              sequence
          Length = 252420

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 219    tgatatatgtacgtttgtatatgt 242
              |||||||||||| |||||||||||
Sbjct: 127219 tgatatatgtacatttgtatatgt 127196
to top
>emb|Z99297.1|HS262D12 Human DNA sequence from clone RP1-262D12 on chromosome 1q23.3-24.3
             Contains the 5' end of the MRPS14 gene for mitochondrial
             ribosomal protein S14, a serologically defined colon
             cancer antigen 3 (SDCCAG3) pseudogene, the 5' end of the
             TNN gene for tenascin N and a CpG island, complete
             sequence
          Length = 100997

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aaaatattatattaaactta 22
             ||||||||||||||||||||
Sbjct: 92573 aaaatattatattaaactta 92554
to top
>emb|AL161799.19| Human DNA sequence from clone RP11-177H22 on chromosome 10 Contains
             part of the MLLT10 gene for myeloid/lymphoid or
             mixed-lineage leukemia (trithorax homolog, Drosophila);
             translocated to, 10 (AF10) and a heterogeneous nuclear
             ribonucleoprotein R (HNRPR)(HNRNPR, hnRNP-R) pseudogene,
             complete sequence
          Length = 139996

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ttatattaaacttatatatg 28
             ||||||||||||||||||||
Sbjct: 62570 ttatattaaacttatatatg 62551
to top
>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3
             Contains the 5' end of the gene for a novel protein
             (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG)
             pseudogene and a CpG island, complete sequence
          Length = 128216

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ttctattgcttatggcaaat 131
             ||||||||||||||||||||
Sbjct: 55862 ttctattgcttatggcaaat 55881
to top
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      tatattaaacttatatatga 29
               ||||||||||||||||||||
Sbjct: 1425662 tatattaaacttatatatga 1425643
to top
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      tatattaaacttatatatga 29
               ||||||||||||||||||||
Sbjct: 1412668 tatattaaacttatatatga 1412649
to top
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      tatattaaacttatatatga 29
               ||||||||||||||||||||
Sbjct: 1447650 tatattaaacttatatatga 1447631
to top
>emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in linkage group 11,
             complete sequence
          Length = 145678

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     aaatattatattaaacttatatat 27
             ||||||||||||||| ||||||||
Sbjct: 47396 aaatattatattaaaattatatat 47373
to top
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
              complete sequence
          Length = 139421

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    ggccgccgacgagcttgagg 329
              ||||||||||||||||||||
Sbjct: 110220 ggccgccgacgagcttgagg 110239
to top
>gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179892

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      aaaatattatattaaacttatata 26
              ||||||||||||||||| ||||||
Sbjct: 159051 aaaatattatattaaacatatata 159074
to top
>gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 186714

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      aaaatattatattaaacttatata 26
              ||||||||||||||||| ||||||
Sbjct: 107876 aaaatattatattaaacatatata 107853
to top
>gb|AC021856.7| Homo sapiens BAC clone RP11-553E5 from 4, complete sequence
          Length = 202507

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      aaaatattatattaaacttatata 26
              ||||| ||||||||||||||||||
Sbjct: 128989 aaaatgttatattaaacttatata 129012
to top
>gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-85d15, complete
             sequence
          Length = 127331

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     aaaatattatattaaacttatata 26
             |||||||||||||||| |||||||
Sbjct: 31960 aaaatattatattaaatttatata 31983
to top
>gb|U70770.1|DMU70770 Drosophila melanogaster furrowed (fw) gene, complete cds
          Length = 13523

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 3    aaaatattatattaaacttatata 26
            ||||||||||||||||| ||||||
Sbjct: 9092 aaaatattatattaaacatatata 9069
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      ggccgccgacgagcttgagg 329
                ||||||||||||||||||||
Sbjct: 14930442 ggccgccgacgagcttgagg 14930461
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      ggccgccgacgagcttgagg 329
                ||||||||||||||||||||
Sbjct: 28350077 ggccgccgacgagcttgagg 28350096
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      ggccgccgacgagcttgagg 329
                ||||||||||||||||||||
Sbjct: 30832078 ggccgccgacgagcttgagg 30832097
to top
>gb|AC012170.6|AC012170 Homo sapiens chromosome 15 clone RP11-562A8 map 15q21.1, complete
             sequence
          Length = 198550

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aaatattatattaaacttat 23
             ||||||||||||||||||||
Sbjct: 74413 aaatattatattaaacttat 74432
to top
>gb|AC018887.10| Homo sapiens BAC clone RP11-419E14 from 2, complete sequence
          Length = 189466

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    atatatgtacgtttgtatat 240
              ||||||||||||||||||||
Sbjct: 169067 atatatgtacgtttgtatat 169048
to top
>gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, complete sequence
          Length = 156789

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      aaaatattatattaaactta 22
              ||||||||||||||||||||
Sbjct: 126655 aaaatattatattaaactta 126636
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     aacttatatatgatgtcttt 36
              ||||||||||||||||||||
Sbjct: 320903 aacttatatatgatgtcttt 320922
to top
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ggccgccgacgagcttgagg 329
             ||||||||||||||||||||
Sbjct: 62655 ggccgccgacgagcttgagg 62674
to top
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    ggccgccgacgagcttgagg 329
              ||||||||||||||||||||
Sbjct: 148106 ggccgccgacgagcttgagg 148125
to top
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ggccgccgacgagcttgagg 329
             ||||||||||||||||||||
Sbjct: 15655 ggccgccgacgagcttgagg 15674
to top
>dbj|AK108113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C02, full
           insert sequence
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 ggccgccgacgagcttgagg 329
           ||||||||||||||||||||
Sbjct: 102 ggccgccgacgagcttgagg 121
to top
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ggccgccgacgagcttgagg 329
             ||||||||||||||||||||
Sbjct: 59918 ggccgccgacgagcttgagg 59937
to top
>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete
              sequence
          Length = 308317

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      aaaatattatattaaacttatata 26
              ||||||||||||||||| ||||||
Sbjct: 286492 aaaatattatattaaacatatata 286515
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      ggccgccgacgagcttgagg 329
                ||||||||||||||||||||
Sbjct: 14938683 ggccgccgacgagcttgagg 14938702
to top
>emb|AL713980.9| Human DNA sequence from clone XXbac-81I18 on chromosome 6, complete
             sequence
          Length = 123817

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aaatattatattaaacttat 23
             ||||||||||||||||||||
Sbjct: 66991 aaatattatattaaacttat 67010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,408,383
Number of Sequences: 3902068
Number of extensions: 3408383
Number of successful extensions: 60221
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59902
Number of HSP's gapped (non-prelim): 316
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top