Clone Name | rbah61k14 |
---|---|
Clone Library Name | barley_pub |
>gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, complete cds Length = 1529 Score = 860 bits (434), Expect = 0.0 Identities = 458/467 (98%), Gaps = 1/467 (0%) Strand = Plus / Minus Query: 1 tgaaaatattatattaaacttatatatgatgtctttcgatcacaagnacgatcaaattat 60 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1485 tgaaaatattatattaaacttatatatgatgtctttcgatcacaag-acgatcaaattat 1427 Query: 61 gcatcacatagcagtacaattcctcgtcagaaaatggtgaagnnnnnnnggttctattgc 120 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1426 gcatcacatagcagtacaattcctcgtcagaaaatggtgaagaaaaaaaggttctattgc 1367 Query: 121 ttatggcaaattcacatcgggccatccggcatccagtactggacaataacgggtacgcac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 ttatggcaaattcacatcgggccatccggcatccagtactggacaataacgggtacgcac 1307 Query: 181 tcccatggcattgcattcacatcgatcggacgatatcttgatatatgtacgtttgtatat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 tcccatggcattgcattcacatcgatcggacgatatcttgatatatgtacgtttgtatat 1247 Query: 241 gtcggagttaaccggtggggaagatttactgctcccatgtttcgaacttgccggagacga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 gtcggagttaaccggtggggaagatttactgctcccatgtttcgaacttgccggagacga 1187 Query: 301 agtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgacgaacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 agtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgacgaacg 1127 Query: 361 ggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacggtgcact 420 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1126 ggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacggtgcact 1067 Query: 421 ggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 ggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 1020
>ref|NM_192260.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 797 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 738 Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | Sbjct: 737 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 678 Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 677 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 618
>dbj|AK099825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G17, full insert sequence Length = 1163 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 847 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 788 Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | Sbjct: 787 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 728 Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 727 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 668
>dbj|AK060890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B12, full insert sequence Length = 1165 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 846 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 787 Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | Sbjct: 786 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 727 Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 726 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 667
>gb|AF182806.1|AF182806 Oryza sativa carbonic anhydrase 3 mRNA, complete cds Length = 1169 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 841 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 782 Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | Sbjct: 781 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 722 Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 721 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 662
>gb|U08404.1|OSU08404 Oryza sativa chloroplast carbonic anhydrase mRNA, complete cds Length = 1148 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 832 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 773 Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | Sbjct: 772 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 713 Query: 408 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 712 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 653
>gb|AY109272.1| Zea mays PCO064414 mRNA sequence Length = 978 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 291 ccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctcc 350 ||||| ||||||||||||||| ||||||| ||||||||||| || |||| || || ||| Sbjct: 719 ccggacacgaagtcgtagtgggcgccgaccagcttgagggtccccttggccagcccttcc 660 Query: 351 ttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcagg 410 | |||||| ||||||||| |||||||| ||||||||||| ||||||||||||| |||| Sbjct: 659 tggacgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctccagg 600 Query: 411 acggtgcactggtcatcgaaaggcatggaggcg 443 | || ||||||||||||||| |||| ||||||| Sbjct: 599 atggagcactggtcatcgaagggcacggaggcg 567
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 125 bits (63), Expect = 1e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 25698466 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 25698407 Query: 348 tccttgacgaacgggtaggtcaagaggttct 378 ||||||||||||||||||||| |||||||| Sbjct: 25698406 tccttgacgaacgggtaggtcttgaggttct 25698376 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Minus Query: 420 tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 25698144 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 25698097
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 125 bits (63), Expect = 1e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 145272 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 145213 Query: 348 tccttgacgaacgggtaggtcaagaggttct 378 ||||||||||||||||||||| |||||||| Sbjct: 145212 tccttgacgaacgggtaggtcttgaggttct 145182 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Minus Query: 420 tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 144950 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 144903
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 125 bits (63), Expect = 1e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 930 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 871 Query: 348 tccttgacgaacgggtaggtcaagaggttct 378 ||||||||||||||||||||| |||||||| Sbjct: 870 tccttgacgaacgggtaggtcttgaggttct 840 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Minus Query: 420 tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 608 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 561
>dbj|AB016283.1| Oryza sativa gene for carbonic anhydrase, complete cds Length = 8532 Score = 125 bits (63), Expect = 1e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 288 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 347 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 8047 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 7988 Query: 348 tccttgacgaacgggtaggtcaagaggttct 378 ||||||||||||||||||||| |||||||| Sbjct: 7987 tccttgacgaacgggtaggtcttgaggttct 7957 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Minus Query: 420 tggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 467 |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 7725 tggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 7678
>gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mRNA, complete cds Length = 1208 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 296 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 355 |||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| || Sbjct: 864 gacgaagtcgtagtggccgccgaccagcttgagggagccgttggacacaccttccttcac 805 Query: 356 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacggt 415 | |||||||||| |||||| | ||||| ||||||||||||||||||| || || || Sbjct: 804 ccaggggtaggtcaggaggttgtacagggagacgttgacggcctccttctccaagatgga 745 Query: 416 gcactggtcatcgaa 430 ||||||||| ||||| Sbjct: 744 gcactggtcgtcgaa 730
>gb|U19739.1|UPU19739 Urochloa panicoides carbonic anhydrase 2 mRNA, complete cds Length = 1034 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 296 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 355 |||||||||||||||||||||||| |||||||||| ||||||| ||| || ||||| || Sbjct: 703 gacgaagtcgtagtggccgccgaccagcttgagggacccgttggacacgccttccttcac 644 Query: 356 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacggt 415 | |||||||||| |||||| | |||||| |||||||| |||||||||| || || || Sbjct: 643 ccaggggtaggtcaggaggttgtagagggagacgttgactgcctccttctccaagatgga 584 Query: 416 gcactggtcatcgaa 430 ||||||||||||||| Sbjct: 583 gcactggtcatcgaa 569
>gb|U08403.1|ZMU08403 Zea mays Golden Bantam carbonic anhydrase mRNA, complete cds Length = 2184 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Minus Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||| |||||| || |||||||||||| |||||||| ||||||||||||| | Sbjct: 671 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 612 Query: 408 aggacggtgcactggtcatcgaaaggca 435 |||| || ||||||||||||||| |||| Sbjct: 611 aggatggagcactggtcatcgaacggca 584 Score = 87.7 bits (44), Expect = 3e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 |||||||| || |||||| || |||||||||||| |||||||| ||||||||||||| | Sbjct: 1277 tccttgaccaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 1218 Query: 408 aggacggtgcactggtcatcgaaaggca 435 |||| || ||||||||||||||| |||| Sbjct: 1217 aggatggagcactggtcatcgaacggca 1190 Score = 83.8 bits (42), Expect = 5e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 294 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 1934 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1875 Query: 354 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413 ||||| ||||||||| |||||||| ||||||||||| ||||||||||||| || | | Sbjct: 1874 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1815 Query: 414 gtgcactggtcatcgaaaggca 435 | |||||||||||||| |||| Sbjct: 1814 gaccactggtcatcgaacggca 1793
>gb|U08401.1|ZMU08401 Zea mays carbonic anhydrase mRNA, complete cds Length = 1920 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Minus Query: 348 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttc 407 ||||||||||| |||||| || |||||||||||| |||||||| ||||||||||||| | Sbjct: 950 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 891 Query: 408 aggacggtgcactggtcatcgaaaggca 435 |||| || ||||||||||||||| |||| Sbjct: 890 aggatggagcactggtcatcgaacggca 863 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Minus Query: 294 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551 Query: 354 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413 ||||| ||||||||| |||||||| ||||||||||| ||||||||||||| || | | Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491 Query: 414 gtgcactggtcatcgaaaggca 435 | ||||||||||||||| |||| Sbjct: 1490 gagcactggtcatcgaacggca 1469
>gb|AY109373.1| Zea mays CL2331_1 mRNA sequence Length = 2552 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Minus Query: 294 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551 Query: 354 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413 ||||| ||||||||| |||||||| ||||||||||| ||||||||||||| || | | Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491 Query: 414 gtgcactggtcatcgaaaggca 435 | ||||||||||||||| |||| Sbjct: 1490 gagcactggtcatcgaacggca 1469 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 397 cctccttcttcaggacggtgcactggtcatcgaaaggca 435 ||||||||| ||||| || ||||||||||||||| |||| Sbjct: 901 cctccttctccaggatggagcactggtcatcgaacggca 863
>gb|M95073.1|MZEORFN Zea mays putative carbonic anhydrase homolog mRNA, partial cds Length = 210 Score = 89.7 bits (45), Expect = 8e-15 Identities = 114/137 (83%) Strand = Plus / Minus Query: 294 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 353 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 171 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 112 Query: 354 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttcttcaggacg 413 ||||| ||||||||| |||||||| ||||||||||| ||||||||||||| || | | Sbjct: 111 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 52 Query: 414 gtgcactggtcatcgaa 430 | ||||||||||||||| Sbjct: 51 gagcactggtcatcgaa 35
>emb|AL929442.9| Mouse DNA sequence from clone RP23-95M20 on chromosome 4, complete sequence Length = 176578 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aatattatattaaacttatat 25 ||||||||||||||||||||| Sbjct: 154336 aatattatattaaacttatat 154356
>gb|AF140060.1|BNFADD1 Brassica napus FAD31 gene, FAD31-DN allele, partial sequence Length = 655 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 aaatattatattaaacttata 24 ||||||||||||||||||||| Sbjct: 319 aaatattatattaaacttata 299
>gb|AF056572.1| Brassica rapa cultivar R500 FAD31 gene, FAD31-R500 allele, partial cds Length = 1714 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 aaatattatattaaacttata 24 ||||||||||||||||||||| Sbjct: 320 aaatattatattaaacttata 300
>dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-212D19, complete sequence Length = 138197 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 tatatgtacgtttgtatatgt 242 ||||||||||||||||||||| Sbjct: 80852 tatatgtacgtttgtatatgt 80872
>ref|XM_467687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1138 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 102 ggccgccgacgagcttgagg 121
>ref|NM_196639.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019M20.11), mRNA Length = 642 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 189 ggccgccgacgagcttgagg 208
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence Length = 252420 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tgatatatgtacgtttgtatatgt 242 |||||||||||| ||||||||||| Sbjct: 127219 tgatatatgtacatttgtatatgt 127196
>emb|Z99297.1|HS262D12 Human DNA sequence from clone RP1-262D12 on chromosome 1q23.3-24.3 Contains the 5' end of the MRPS14 gene for mitochondrial ribosomal protein S14, a serologically defined colon cancer antigen 3 (SDCCAG3) pseudogene, the 5' end of the TNN gene for tenascin N and a CpG island, complete sequence Length = 100997 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaatattatattaaactta 22 |||||||||||||||||||| Sbjct: 92573 aaaatattatattaaactta 92554
>emb|AL161799.19| Human DNA sequence from clone RP11-177H22 on chromosome 10 Contains part of the MLLT10 gene for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) and a heterogeneous nuclear ribonucleoprotein R (HNRPR)(HNRNPR, hnRNP-R) pseudogene, complete sequence Length = 139996 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ttatattaaacttatatatg 28 |||||||||||||||||||| Sbjct: 62570 ttatattaaacttatatatg 62551
>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3 Contains the 5' end of the gene for a novel protein (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG) pseudogene and a CpG island, complete sequence Length = 128216 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttctattgcttatggcaaat 131 |||||||||||||||||||| Sbjct: 55862 ttctattgcttatggcaaat 55881
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tatattaaacttatatatga 29 |||||||||||||||||||| Sbjct: 1425662 tatattaaacttatatatga 1425643
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tatattaaacttatatatga 29 |||||||||||||||||||| Sbjct: 1412668 tatattaaacttatatatga 1412649
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tatattaaacttatatatga 29 |||||||||||||||||||| Sbjct: 1447650 tatattaaacttatatatga 1447631
>emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in linkage group 11, complete sequence Length = 145678 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 aaatattatattaaacttatatat 27 ||||||||||||||| |||||||| Sbjct: 47396 aaatattatattaaaattatatat 47373
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 110220 ggccgccgacgagcttgagg 110239
>gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179892 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaaatattatattaaacttatata 26 ||||||||||||||||| |||||| Sbjct: 159051 aaaatattatattaaacatatata 159074
>gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 186714 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 aaaatattatattaaacttatata 26 ||||||||||||||||| |||||| Sbjct: 107876 aaaatattatattaaacatatata 107853
>gb|AC021856.7| Homo sapiens BAC clone RP11-553E5 from 4, complete sequence Length = 202507 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaaatattatattaaacttatata 26 ||||| |||||||||||||||||| Sbjct: 128989 aaaatgttatattaaacttatata 129012
>gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-85d15, complete sequence Length = 127331 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaaatattatattaaacttatata 26 |||||||||||||||| ||||||| Sbjct: 31960 aaaatattatattaaatttatata 31983
>gb|U70770.1|DMU70770 Drosophila melanogaster furrowed (fw) gene, complete cds Length = 13523 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 aaaatattatattaaacttatata 26 ||||||||||||||||| |||||| Sbjct: 9092 aaaatattatattaaacatatata 9069
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 14930442 ggccgccgacgagcttgagg 14930461
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 28350077 ggccgccgacgagcttgagg 28350096
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 30832078 ggccgccgacgagcttgagg 30832097
>gb|AC012170.6|AC012170 Homo sapiens chromosome 15 clone RP11-562A8 map 15q21.1, complete sequence Length = 198550 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaatattatattaaacttat 23 |||||||||||||||||||| Sbjct: 74413 aaatattatattaaacttat 74432
>gb|AC018887.10| Homo sapiens BAC clone RP11-419E14 from 2, complete sequence Length = 189466 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 atatatgtacgtttgtatat 240 |||||||||||||||||||| Sbjct: 169067 atatatgtacgtttgtatat 169048
>gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, complete sequence Length = 156789 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaatattatattaaactta 22 |||||||||||||||||||| Sbjct: 126655 aaaatattatattaaactta 126636
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aacttatatatgatgtcttt 36 |||||||||||||||||||| Sbjct: 320903 aacttatatatgatgtcttt 320922
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 62655 ggccgccgacgagcttgagg 62674
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 148106 ggccgccgacgagcttgagg 148125
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684F11 Length = 147731 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 15655 ggccgccgacgagcttgagg 15674
>dbj|AK108113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C02, full insert sequence Length = 1138 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 102 ggccgccgacgagcttgagg 121
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 59918 ggccgccgacgagcttgagg 59937
>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete sequence Length = 308317 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaaatattatattaaacttatata 26 ||||||||||||||||| |||||| Sbjct: 286492 aaaatattatattaaacatatata 286515
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggccgccgacgagcttgagg 329 |||||||||||||||||||| Sbjct: 14938683 ggccgccgacgagcttgagg 14938702
>emb|AL713980.9| Human DNA sequence from clone XXbac-81I18 on chromosome 6, complete sequence Length = 123817 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaatattatattaaacttat 23 |||||||||||||||||||| Sbjct: 66991 aaatattatattaaacttat 67010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,408,383 Number of Sequences: 3902068 Number of extensions: 3408383 Number of successful extensions: 60221 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59902 Number of HSP's gapped (non-prelim): 316 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)