Clone Name | rbah61k11 |
---|---|
Clone Library Name | barley_pub |
>YAD4_SCHPO (Q09830) Hypothetical protein C4G8.04 in chromosome I| Length = 772 Score = 32.3 bits (72), Expect = 1.2 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Frame = -1 Query: 587 SNEFFRSFPNCLTYTTSEDFVAKVKEAMTRDPQPLTPE-QRYNLSWEAATQRFMEHSELD 411 S++FFRS P C T + S FV+ E PE + Y++S + ++ S L Sbjct: 273 SSKFFRSSPRCSTPSVSSTFVSATSE----------PEVETYSVSTKNSSSNKNLRSSLS 322 Query: 410 KVLSSNGDCASTSGNSVDRKMRKSASLPNMSDI 312 K+LS++ N ++ + S++ P+M I Sbjct: 323 KLLSTS--------NLNNKPLSLSSTAPSMPSI 347
>CD2A2_RAT (Q8QZZ9) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)| Length = 160 Score = 32.0 bits (71), Expect = 1.5 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 140 WCRLTSH-IQDSVPEGA---AGACPRYVAYCSSGSRAPPRSTAGGARCP*SSSGQMLGPH 307 WCR +P GA AG PR+ SGS AP R AG ARC S + + P Sbjct: 80 WCRFELRGPHHPLPTGARRSAGGLPRH-----SGSTAPGRGAAGCARCLGSPAAR---PG 131 Query: 308 PRCPT 322 PR T Sbjct: 132 PRAGT 136
>IBP2_HUMAN (P18065) Insulin-like growth factor-binding protein 2 precursor| (IGFBP-2) (IBP-2) (IGF-binding protein 2) Length = 328 Score = 31.6 bits (70), Expect = 2.0 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 3/96 (3%) Frame = +2 Query: 200 PRYVAYCSSGSRAPPRSTA---GGARCP*SSSGQMLGPHPRCPTCLATRLISSSSCRHCF 370 P +A C APP + A GGAR P + L P C C + +C Sbjct: 50 PERLAACGPPPVAPPAAVAAVAGGARMPCAE----LVREPGCGCCSVCARLEGEACGVYT 105 Query: 371 QRC*HNHHCYSGPCPAPSAP*TSGSQPPMKGCIAAQ 478 RC CY P GS+ P++ + + Sbjct: 106 PRCGQGLRCYPHP----------GSELPLQALVMGE 131
>ZDHC4_MOUSE (Q9D6H5) Probable palmitoyltransferase ZDHHC4 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 4) (DHHC-4) Length = 343 Score = 31.6 bits (70), Expect = 2.0 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = +2 Query: 293 MLGPHPRCPTCLATRLISSSSCRHCFQRC*H--NHHC 397 M + RCPTC + S CR C RC H +HHC Sbjct: 144 MFPKNSRCPTCDLRKPARSKHCRLC-DRCVHRFDHHC 179
>FOXF1_MOUSE (Q61080) Forkhead box protein F1 (Forkhead-related protein FKHL5)| (Forkhead-related transcription factor 1) (FREAC-1) (Hepatocyte nuclear factor 3 forkhead homolog 8) (HFH-8) Length = 353 Score = 31.2 bits (69), Expect = 2.6 Identities = 22/95 (23%), Positives = 36/95 (37%) Frame = +2 Query: 173 VPEGAAGACPRYVAYCSSGSRAPPRSTAGGARCP*SSSGQMLGPHPRCPTCLATRLISSS 352 +P GA G + Y SS + PP ++A +S + P P A +S S Sbjct: 223 LPAGAGGVMEPHAVYSSSAAAWPPAASAA-----LNSGASYIKQQPLSPCNPAANPLSGS 277 Query: 353 SCRHCFQRC*HNHHCYSGPCPAPSAP*TSGSQPPM 457 H ++ + + ++GP P P M Sbjct: 278 ISTHSLEQPYLHQNSHNGPAELQGIPRYHSQSPSM 312
>PEX6_NEUCR (Q7SGP2) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1381 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -1 Query: 305 GGLAFAHYCFTGSELLRLSTGAVPGTLNYNKQHSVDMHLLPPQVQNP 165 GG+A T E TG +PGT++ + Q+ + + LP QNP Sbjct: 663 GGIACVDISLTHLEQSGSVTGRIPGTISNSWQYYLGIRKLPKHQQNP 709
>AKR1_NEUCR (Q7S3M5) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 729 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +2 Query: 314 CPTCLATRLISSSSCRHCFQRC--*HNHHC 397 C TC+ + S CR C QRC H+HHC Sbjct: 442 CVTCMIRTPLRSKHCRRC-QRCVAKHDHHC 470
>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 702 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +2 Query: 314 CPTCLATRLISSSSCRHCFQRC--*HNHHC 397 C TC+ + S CR C QRC H+HHC Sbjct: 430 CVTCMIQTPLRSKHCRRC-QRCVAKHDHHC 458
>MCR_CHICK (Q8QHI2) Mineralocorticoid receptor (MR) (Fragment)| Length = 147 Score = 30.4 bits (67), Expect = 4.4 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -1 Query: 419 ELDKVLSSNGDCASTSGNSVDRKMRKSASLPNMSDIVDGGLAFAHYCFTGSELLRL 252 EL K+++ C S SG S R + + L +M D+V L F Y F S+ L++ Sbjct: 91 ELKKMVTK---CPSNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESQALKV 143
>ZDHC4_BOVIN (Q58DT3) Probable palmitoyltransferase ZDHHC4 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 4) (DHHC-4) Length = 343 Score = 30.4 bits (67), Expect = 4.4 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = +2 Query: 287 GQMLGPHPRCPTCLATRLISSSSCRHCFQRC*H--NHHC 397 G M + RCPTC + S C C RC H +HHC Sbjct: 142 GVMFPKNVRCPTCDLRKPARSKHCSVC-NRCVHRFDHHC 179
>F16P2_SOLTU (P46276) Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11)| (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (CY-F1) Length = 340 Score = 30.0 bits (66), Expect = 5.8 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = -1 Query: 401 SSNGDCASTSGNSVDRKMRKSASLPNMSDIVDGGLAF--AHYCFTGSE-LLRLSTGA 240 SSN DC + G M K P + D++ G+ A YC GS L LSTG+ Sbjct: 126 SSNIDCGVSIGTIFGIYMIKDGHEPTLDDVLQPGMNMLAAGYCMYGSSCTLVLSTGS 182
>YJEK_ECOLI (P39280) Hypothetical UPF0069 protein yjeK| Length = 342 Score = 30.0 bits (66), Expect = 5.8 Identities = 13/56 (23%), Positives = 27/56 (48%) Frame = -1 Query: 488 PLTPEQRYNLSWEAATQRFMEHSELDKVLSSNGDCASTSGNSVDRKMRKSASLPNM 321 P Q +W+ A + H ELD+++ S GD + +D + + ++P++ Sbjct: 133 PYAENQGNKRNWQTALEYVAAHPELDEMIFSGGDPLMAKDHELDWLLTQLEAIPHI 188
>HTPG_WIGBR (Q8D228) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 638 Score = 30.0 bits (66), Expect = 5.8 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -1 Query: 554 LTYTTSEDFVAKVKEAMTRDPQPLTPEQRYNLSWE 450 L Y+ +F K+K +T+D + LTPE++ + +W+ Sbjct: 199 LKYSNHINFPIKLKTKITKDNKILTPEEKKSYTWK 233
>MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)| Length = 978 Score = 30.0 bits (66), Expect = 5.8 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -1 Query: 419 ELDKVLSSNGDCASTSGNSVDRKMRKSASLPNMSDIVDGGLAFAHYCFTGSELLRLSTGA 240 EL K+++ C ++SG S R + + L +M D+V+ L F Y F S+ L++ A Sbjct: 896 ELRKMVTK---CPNSSGQSWQRFYQLTKLLDSMHDLVNDLLEFCFYTFRESQALKVEFPA 952 Query: 239 V 237 + Sbjct: 953 M 953
>DMN_HUMAN (O15061) Desmuslin| Length = 1565 Score = 26.2 bits (56), Expect(2) = 6.7 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +2 Query: 173 VPEGAAGACPRYVAYCSSGSRAPPRSTAGGARCP*SSSGQMLGPHPRCP 319 V E +AG A + SR+ T G + P S LGP P CP Sbjct: 1149 VVEVSAGGDLSQAASPTGASRSVRHVTLGPGQSPLSREVIFLGPAPACP 1197 Score = 21.9 bits (45), Expect(2) = 6.7 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 413 PAPSAP*TSGSQPPMKGCIAAQV*GAGGH 499 PAP+ P GS P +A + G+G H Sbjct: 1192 PAPACPEAWGSPEPGPAESSADMDGSGRH 1220
>POK_DROME (Q01842) Ets DNA-binding protein pokkuri (Protein yan) (Protein| anterior open) Length = 732 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/61 (34%), Positives = 26/61 (42%) Frame = +2 Query: 182 GAAGACPRYVAYCSSGSRAPPRSTAGGARCP*SSSGQMLGPHPRCPTCLATRLISSSSCR 361 GA GA P S+G AP A P SSS G + P + + ISS+S Sbjct: 202 GATGAAPG-----SAGGSAPAAGGATNTSNPTSSSASSTGSNGSQPNIMPMKGISSASSN 256 Query: 362 H 364 H Sbjct: 257 H 257
>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)| Length = 984 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -1 Query: 419 ELDKVLSSNGDCASTSGNSVDRKMRKSASLPNMSDIVDGGLAFAHYCFTGSELLRLSTGA 240 EL K+++ C + SG S R + + L +M D+V+ L F Y F S+ L++ A Sbjct: 902 ELRKMVTK---CPNNSGQSWQRFYQLTKLLDSMHDLVNDLLEFCFYTFRESQALKVEFPA 958 Query: 239 V 237 + Sbjct: 959 M 959
>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)| Length = 982 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -1 Query: 419 ELDKVLSSNGDCASTSGNSVDRKMRKSASLPNMSDIVDGGLAFAHYCFTGSELLRLSTGA 240 EL K+++ C + SG S R + + L +M D+V+ L F Y F S+ L++ A Sbjct: 900 ELRKMVTK---CPNNSGQSWQRFYQLTKLLDSMHDLVNDLLEFCFYTFRESQALKVEFPA 956 Query: 239 V 237 + Sbjct: 957 M 957
>MCR_RAT (P22199) Mineralocorticoid receptor (MR)| Length = 981 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -1 Query: 419 ELDKVLSSNGDCASTSGNSVDRKMRKSASLPNMSDIVDGGLAFAHYCFTGSELLRLSTGA 240 EL K+++ C ++SG S R + + L +M D+V L F Y F S+ L++ A Sbjct: 899 ELRKMVTK---CPNSSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESQALKVEFPA 955 Query: 239 V 237 + Sbjct: 956 M 956 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,769,286 Number of Sequences: 219361 Number of extensions: 2248795 Number of successful extensions: 6329 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6322 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)