Clone Name
rbah61k11
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome...
170
3e-39
2 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
170
3e-39
3 dbj|AK102797.1| Oryza sativa (japonica cultivar-group) cDNA clon...
170
3e-39
4 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
170
3e-39
5 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
6 gb|AY186241.1| Xerophyta humilis digalactosyldiacylglycerol synt...
68
4e-08
7 dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
8 dbj|AK120285.1| Oryza sativa (japonica cultivar-group) cDNA clon...
68
4e-08
9 ref|NM_111999.2| Arabidopsis thaliana DGD1 (DIGALACTOSYL DIACYLG...
62
2e-06
10 gb|AC009918.5|ATAC009918 Arabidopsis thaliana chromosome III BAC...
62
2e-06
11 gb|AY101521.1| Arabidopsis thaliana AT3g11670/T19F11_7 mRNA, com...
62
2e-06
12 gb|AY075649.1| Arabidopsis thaliana AT3g11670/T19F11_7 mRNA, com...
62
2e-06
13 emb|BX823915.1|CNS0A4T4 Arabidopsis thaliana Full-length cDNA Co...
62
2e-06
14 gb|AF149842.1|AF149842 Arabidopsis thaliana digalactosyldiacylgl...
62
2e-06
15 gb|AF149841.1|AF149841 Arabidopsis thaliana digalactosyldiacylgl...
62
2e-06
16 gb|AY635907.1| Glycine max digalactosyldiacylglycerol synthase 1...
54
6e-04
17 gb|AY651024.1| Nicotiana tabacum digalactosyldiacylglycerol synt...
54
6e-04
18 ref|XM_847365.1| PREDICTED: Canis familiaris similar to SLAM fam...
50
0.009
19 gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, ...
44
0.54
20 emb|AL645851.8| Mouse DNA sequence from clone RP23-193A16 on chr...
44
0.54
21 gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, com...
42
2.1
22 emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM...
42
2.1
23 gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Ca...
42
2.1
24 gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, comp...
42
2.1
25 emb|AJ289880.1|HSA289880 Homo sapiens KIAA0851 gene (partial), X...
42
2.1
26 gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165...
42
2.1
27 gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosom...
40
8.5
28 ref|XM_472431.1| Oryza sativa (japonica cultivar-group), predic...
40
8.5
29 gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete...
40
8.5
30 ref|XM_534327.2| PREDICTED: Canis familiaris similar to Protein ...
40
8.5
31 gb|AC111280.7| Rattus norvegicus 13 BAC CH230-51N9 (Children's H...
40
8.5
32 gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome...
40
8.5
33 emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4,...
40
8.5
34 emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,...
40
8.5
35 emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chr...
40
8.5
36 dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
40
8.5
37 ref|NM_001024205.1| Mus musculus nuclear fragile X mental retard...
40
8.5
38 gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, comple...
40
8.5
39 gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...
40
8.5
40 emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on ch...
40
8.5
41 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.5
42 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.5
43 gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, comp...
40
8.5
44 gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, comp...
40
8.5
45 dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.5
46 ref|XM_341358.2| PREDICTED: Rattus norvegicus similar to diacylg...
40
8.5
47 gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete g...
40
8.5
48 gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, comple...
40
8.5
49 gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
40
8.5
50 gb|CP000192.1| Drosophila melanogaster genomic scaffold 21100002...
40
8.5
51 gb|U82323.1|DVU82323 Desulfovibrio vulgaris ferric uptake regula...
40
8.5
52 gb|U30297.1|AMU30297 Amsacta moorei entomopoxvirus filament-asso...
40
8.5
>gb| AC133217.2 | Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0052H02, complete sequence
Length = 159632
Score = 170 bits (86), Expect = 3e-39
Identities = 191/226 (84%)
Strand = Plus / Minus
Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454
|||| |||| ||||||||||||||| |||||||||||||| ||||| || || |||||||
Sbjct: 84495 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 84436
Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514
| || | |||||||| |||||||||||||||||| || || || || | |||||||||||
Sbjct: 84435 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 84376
Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574
||||||| || ||||||||||| || || | ||||||| ||||| || ||||| ||||
Sbjct: 84375 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 84316
Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620
| || ||||| ||||| || ||||||||||| ||||||||||||||
Sbjct: 84315 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 84270
Score = 137 bits (69), Expect = 5e-29
Identities = 165/197 (83%)
Strand = Plus / Minus
Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207
||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| ||||
Sbjct: 84754 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 84695
Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267
|||||||| ||||| || ||||| ||||| | || ||||| ||||| | |||||||||
Sbjct: 84694 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 84635
Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327
|||| ||||||||||||||||| || || || || ||||| || ||||| ||||||||
Sbjct: 84634 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 84575
Query: 328 ggcaacgaggctgattt 344
|||||||||||||||||
Sbjct: 84574 ggcaacgaggctgattt 84558
>dbj| AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 170 bits (86), Expect = 3e-39
Identities = 191/226 (84%)
Strand = Plus / Minus
Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454
|||| |||| ||||||||||||||| |||||||||||||| ||||| || || |||||||
Sbjct: 2804688 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 2804629
Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514
| || | |||||||| |||||||||||||||||| || || || || | |||||||||||
Sbjct: 2804628 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 2804569
Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574
||||||| || ||||||||||| || || | ||||||| ||||| || ||||| ||||
Sbjct: 2804568 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 2804509
Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620
| || ||||| ||||| || ||||||||||| ||||||||||||||
Sbjct: 2804508 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 2804463
Score = 137 bits (69), Expect = 5e-29
Identities = 165/197 (83%)
Strand = Plus / Minus
Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207
||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| ||||
Sbjct: 2804947 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 2804888
Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267
|||||||| ||||| || ||||| ||||| | || ||||| ||||| | |||||||||
Sbjct: 2804887 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 2804828
Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327
|||| ||||||||||||||||| || || || || ||||| || ||||| ||||||||
Sbjct: 2804827 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 2804768
Query: 328 ggcaacgaggctgattt 344
|||||||||||||||||
Sbjct: 2804767 ggcaacgaggctgattt 2804751
>dbj| AK102797.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033108D09, full
insert sequence
Length = 2625
Score = 170 bits (86), Expect = 3e-39
Identities = 191/226 (84%)
Strand = Plus / Minus
Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454
|||| |||| ||||||||||||||| |||||||||||||| ||||| || || |||||||
Sbjct: 2141 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 2082
Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514
| || | |||||||| |||||||||||||||||| || || || || | |||||||||||
Sbjct: 2081 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 2022
Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574
||||||| || ||||||||||| || || | ||||||| ||||| || ||||| ||||
Sbjct: 2021 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 1962
Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620
| || ||||| ||||| || ||||||||||| ||||||||||||||
Sbjct: 1961 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 1916
Score = 137 bits (69), Expect = 5e-29
Identities = 165/197 (83%)
Strand = Plus / Minus
Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207
||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| ||||
Sbjct: 2400 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 2341
Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267
|||||||| ||||| || ||||| ||||| | || ||||| ||||| | |||||||||
Sbjct: 2340 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 2281
Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327
|||| ||||||||||||||||| || || || || ||||| || ||||| ||||||||
Sbjct: 2280 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 2221
Query: 328 ggcaacgaggctgattt 344
|||||||||||||||||
Sbjct: 2220 ggcaacgaggctgattt 2204
>gb| DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 170 bits (86), Expect = 3e-39
Identities = 191/226 (84%)
Strand = Plus / Minus
Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454
|||| |||| ||||||||||||||| |||||||||||||| ||||| || || |||||||
Sbjct: 2813719 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 2813660
Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514
| || | |||||||| |||||||||||||||||| || || || || | |||||||||||
Sbjct: 2813659 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 2813600
Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574
||||||| || ||||||||||| || || | ||||||| ||||| || ||||| ||||
Sbjct: 2813599 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 2813540
Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620
| || ||||| ||||| || ||||||||||| ||||||||||||||
Sbjct: 2813539 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 2813494
Score = 137 bits (69), Expect = 5e-29
Identities = 165/197 (83%)
Strand = Plus / Minus
Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207
||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| ||||
Sbjct: 2813978 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 2813919
Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267
|||||||| ||||| || ||||| ||||| | || ||||| ||||| | |||||||||
Sbjct: 2813918 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 2813859
Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327
|||| ||||||||||||||||| || || || || ||||| || ||||| ||||||||
Sbjct: 2813858 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 2813799
Query: 328 ggcaacgaggctgattt 344
|||||||||||||||||
Sbjct: 2813798 ggcaacgaggctgattt 2813782
>dbj| AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 67.9 bits (34), Expect = 4e-08
Identities = 172/218 (78%)
Strand = Plus / Minus
Query: 406 accttgtccagctccgagtgctccatgaacctctgggtcgcagcctcccatgaaaggttg 465
|||||||| || || |||| |||||||||||||| ||| || |||||||| || ||||||
Sbjct: 19996301 accttgtcgaggtctgagtactccatgaacctctcggttgctgcctcccacgacaggttg 19996242
Query: 466 tatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttccttcactttggca 525
|| | ||||| || ||||| |||||||| || | || ||| || || ||||| ||||
Sbjct: 19996241 tacctttgctccggggtgagaggctggggttccctggccatggcctcgttcaccctggcg 19996182
Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585
|| || ||||| | ||| |||| ||||||||||| || || || ||||||| || ||
Sbjct: 19996181 acgaactcctccggggtcctgtacgtcaggcagttcgggaacgacatgaagaactcgttc 19996122
Query: 586 gatggatgatctgcgcagaccacaaacttacccatcgc 623
|||||||| || ||||||| || ||||| ||||||||
Sbjct: 19996121 gatggatgctccgcgcagatgacgaacttccccatcgc 19996084
Score = 40.1 bits (20), Expect = 8.5
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 152 accagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgctatgtt 211
|||| ||||||||||| | ||| || ||||| ||||| ||| ||||||||||| ||||
Sbjct: 19996537 accaaccatatacagggtgctgcacttgaggcggcaggaggcccatgtccacgcagtgtt 19996478
Query: 212 gctt 215
||||
Sbjct: 19996477 gctt 19996474
>gb| AY186241.1 | Xerophyta humilis digalactosyldiacylglycerol synthase (dgd) mRNA,
partial cds
Length = 1398
Score = 67.9 bits (34), Expect = 4e-08
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 523 gcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattca 582
||||| ||||||| ||| ||| |||| |||| |||||||||||||| ||||||| |||
Sbjct: 1034 gcaacgaagtcctttgatgtcttgtaggtcaagcagtttggaaatgccatgaagaactca 975
Query: 583 ttggatggatgatctgcgcagaccacaaacttacccat 620
|| ||||| ||||| || |||| ||||||||| |||||
Sbjct: 974 tttgatgggtgatcagcacagatcacaaacttccccat 937
>dbj| AP005609.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0014M17
Length = 156778
Score = 67.9 bits (34), Expect = 4e-08
Identities = 172/218 (78%)
Strand = Plus / Minus
Query: 406 accttgtccagctccgagtgctccatgaacctctgggtcgcagcctcccatgaaaggttg 465
|||||||| || || |||| |||||||||||||| ||| || |||||||| || ||||||
Sbjct: 100422 accttgtcgaggtctgagtactccatgaacctctcggttgctgcctcccacgacaggttg 100363
Query: 466 tatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttccttcactttggca 525
|| | ||||| || ||||| |||||||| || | || ||| || || ||||| ||||
Sbjct: 100362 tacctttgctccggggtgagaggctggggttccctggccatggcctcgttcaccctggcg 100303
Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585
|| || ||||| | ||| |||| ||||||||||| || || || ||||||| || ||
Sbjct: 100302 acgaactcctccggggtcctgtacgtcaggcagttcgggaacgacatgaagaactcgttc 100243
Query: 586 gatggatgatctgcgcagaccacaaacttacccatcgc 623
|||||||| || ||||||| || ||||| ||||||||
Sbjct: 100242 gatggatgctccgcgcagatgacgaacttccccatcgc 100205
Score = 40.1 bits (20), Expect = 8.5
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 152 accagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgctatgtt 211
|||| ||||||||||| | ||| || ||||| ||||| ||| ||||||||||| ||||
Sbjct: 100658 accaaccatatacagggtgctgcacttgaggcggcaggaggcccatgtccacgcagtgtt 100599
Query: 212 gctt 215
||||
Sbjct: 100598 gctt 100595
>dbj| AK120285.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013049P04, full
insert sequence
Length = 2731
Score = 67.9 bits (34), Expect = 4e-08
Identities = 172/218 (78%)
Strand = Plus / Minus
Query: 406 accttgtccagctccgagtgctccatgaacctctgggtcgcagcctcccatgaaaggttg 465
|||||||| || || |||| |||||||||||||| ||| || |||||||| || ||||||
Sbjct: 2242 accttgtcgaggtctgagtactccatgaacctctcggttgctgcctcccacgacaggttg 2183
Query: 466 tatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttccttcactttggca 525
|| | ||||| || ||||| |||||||| || | || ||| || || ||||| ||||
Sbjct: 2182 tacctttgctccggggtgagaggctggggttccctggccatggcctcgttcaccctggcg 2123
Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585
|| || ||||| | ||| |||| ||||||||||| || || || ||||||| || ||
Sbjct: 2122 acgaactcctccggggtcctgtacgtcaggcagttcgggaacgacatgaagaactcgttc 2063
Query: 586 gatggatgatctgcgcagaccacaaacttacccatcgc 623
|||||||| || ||||||| || ||||| ||||||||
Sbjct: 2062 gatggatgctccgcgcagatgacgaacttccccatcgc 2025
Score = 40.1 bits (20), Expect = 8.5
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 152 accagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgctatgtt 211
|||| ||||||||||| | ||| || ||||| ||||| ||| ||||||||||| ||||
Sbjct: 2478 accaaccatatacagggtgctgcacttgaggcggcaggaggcccatgtccacgcagtgtt 2419
Query: 212 gctt 215
||||
Sbjct: 2418 gctt 2415
>ref| NM_111999.2 | Arabidopsis thaliana DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1);
galactolipid galactosyltransferase/ transferase,
transferring glycosyl groups AT3G11670 (DGD1) transcript
variant AT3G11670.1 mRNA, complete cds
Length = 2670
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 2153 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2094
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 2093 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 2035
>gb| AC009918.5 |ATAC009918 Arabidopsis thaliana chromosome III BAC T19F11 genomic sequence,
complete sequence
Length = 45173
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Plus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 18113 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 18172
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 18173 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 18231
>gb| AY101521.1 | Arabidopsis thaliana AT3g11670/T19F11_7 mRNA, complete cds
Length = 2427
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 2102 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2043
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 2042 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 1984
>gb| AY075649.1 | Arabidopsis thaliana AT3g11670/T19F11_7 mRNA, complete cds
Length = 2670
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 2153 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2094
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 2093 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 2035
>emb| BX823915.1 |CNS0A4T4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS92ZA02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1034
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 509 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 450
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 449 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 391
>gb| AF149842.1 |AF149842 Arabidopsis thaliana digalactosyldiacylglycerol synthase (DGD1) gene,
complete cds
Length = 5128
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 3754 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 3695
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 3694 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 3636
>gb| AF149841.1 |AF149841 Arabidopsis thaliana digalactosyldiacylglycerol synthase (DGD1) mRNA,
complete cds
Length = 2643
Score = 61.9 bits (31), Expect = 2e-06
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561
||||||||||| | |||||||| |||||||| || || || |||| || | ||||||
Sbjct: 2163 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2104
Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620
|| |||||||| |||||||| || || || |||||||| || ||||||||||| |||||
Sbjct: 2103 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 2045
>gb| AY635907.1 | Glycine max digalactosyldiacylglycerol synthase 1 (DGD1) mRNA,
complete cds
Length = 2845
Score = 54.0 bits (27), Expect = 6e-04
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585
|||||||| || || ||| |||| |||| ||||| |||||||| |||||||| |||||
Sbjct: 2087 acaaagtcttcggatgtcctgtaagtcaaacagttgggaaatgacctgaagaactcattt 2028
Query: 586 gatggatgatc 596
|||||||||||
Sbjct: 2027 gatggatgatc 2017
>gb| AY651024.1 | Nicotiana tabacum digalactosyldiacylglycerol synthase (dgd1) mRNA,
partial cds
Length = 1727
Score = 54.0 bits (27), Expect = 6e-04
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 427 tccatgaacctctgggtcgcagcctcccatgaaaggttgtatcgctgctcaggtgtgag 485
|||||||| |||||||| ||||| ||||||||||| |||||| ||| ||| || |||||
Sbjct: 1151 tccatgaatctctgggtagcagcttcccatgaaagcttgtattgctcctcgggagtgag 1093
>ref| XM_847365.1 | PREDICTED: Canis familiaris similar to SLAM family member 7
(LOC609992), mRNA
Length = 2435
Score = 50.1 bits (25), Expect = 0.009
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 479 gtgtgaggggctgggggtcacgggt 503
|||||||||||||||||||||||||
Sbjct: 1467 gtgtgaggggctgggggtcacgggt 1443
>gb| AC091548.11 | Mus musculus Strain C57BL6/J Chromosome 11 BAC, RP23-193K14, complete
sequence
Length = 214157
Score = 44.1 bits (22), Expect = 0.54
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 574 aagaattcattggatggatgat 595
||||||||||||||||||||||
Sbjct: 67569 aagaattcattggatggatgat 67590
>emb| AL645851.8 | Mouse DNA sequence from clone RP23-193A16 on chromosome 11, complete
sequence
Length = 112037
Score = 44.1 bits (22), Expect = 0.54
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 574 aagaattcattggatggatgat 595
||||||||||||||||||||||
Sbjct: 44460 aagaattcattggatggatgat 44439
>gb| AC103673.8 | Mus musculus chromosome 1, clone RP24-336F10, complete sequence
Length = 187158
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 gttggcatcagggagaggagg 86
|||||||||||||||||||||
Sbjct: 32304 gttggcatcagggagaggagg 32324
>emb| AJ297357.1 |HSA297357 Homo sapiens partial LIMD1 gene for LIM domains containing protein 1
and KIAA0851 gene
Length = 87434
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 agtagtctgtagtttgtattg 41
|||||||||||||||||||||
Sbjct: 80817 agtagtctgtagtttgtattg 80837
>gb| AC153550.10 | Mus musculus 10 BAC RP23-250H23 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse BAC Library) complete sequence
Length = 168208
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 acaatcaccattgctactcag 404
|||||||||||||||||||||
Sbjct: 123481 acaatcaccattgctactcag 123501
>gb| AC098476.2 | Homo sapiens chromosome 3 clone RP11-697K23, complete sequence
Length = 176741
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 agtagtctgtagtttgtattg 41
|||||||||||||||||||||
Sbjct: 87251 agtagtctgtagtttgtattg 87271
>emb| AJ289880.1 |HSA289880 Homo sapiens KIAA0851 gene (partial), XT3 gene and LZTFL1 gene
Length = 142281
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 agtagtctgtagtttgtattg 41
|||||||||||||||||||||
Sbjct: 25634 agtagtctgtagtttgtattg 25654
>gb| AC005669.1 |AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence
Length = 176968
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 agtagtctgtagtttgtattg 41
|||||||||||||||||||||
Sbjct: 170284 agtagtctgtagtttgtattg 170264
>gb| AC165258.2 | Mus musculus BAC clone RP23-127F20 from chromosome 17, complete sequence
Length = 203927
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 agggagaggaggaaaaagaa 94
||||||||||||||||||||
Sbjct: 180676 agggagaggaggaaaaagaa 180695
>ref| XM_472431.1 | Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2328
Score = 40.1 bits (20), Expect = 8.5
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604
||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| ||||
Sbjct: 1939 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 1880
>gb| CP000075.1 | Pseudomonas syringae pv. syringae B728a, complete genome
Length = 6093698
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 400 ctcaggaccttgtccagctc 419
||||||||||||||||||||
Sbjct: 5062635 ctcaggaccttgtccagctc 5062654
>ref| XM_534327.2 | PREDICTED: Canis familiaris similar to Protein C20orf26 (LOC477136),
mRNA
Length = 3756
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 335 aggctgatttcctcatcttc 354
||||||||||||||||||||
Sbjct: 3617 aggctgatttcctcatcttc 3598
>gb| AC111280.7 | Rattus norvegicus 13 BAC CH230-51N9 (Children's Hospital Oakland Research
Institute) complete sequence
Length = 216192
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 179 gagggggcagcaggtgcatg 198
||||||||||||||||||||
Sbjct: 196229 gagggggcagcaggtgcatg 196248
>gb| AC132401.4 | Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence
Length = 200657
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 agggagaggaggaaaaagaa 94
||||||||||||||||||||
Sbjct: 138128 agggagaggaggaaaaagaa 138147
>emb| AL606598.3 |OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16,
complete sequence
Length = 114051
Score = 40.1 bits (20), Expect = 8.5
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604
||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| ||||
Sbjct: 33806 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 33747
>emb| AL606453.2 |OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete
sequence
Length = 116952
Score = 40.1 bits (20), Expect = 8.5
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604
||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| ||||
Sbjct: 110100 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 110041
>emb| AL591136.20 | Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5'
end of a novel gene, two novel genes, the Taok1 gene for
TAO kinase 1, a eukaryotic translation initiation factor 2
subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2
(Rps2) pseudogene, the Cryba1 gene for crystallin beta A1
and two CpG islands, complete sequence
Length = 220230
Score = 40.1 bits (20), Expect = 8.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 aagtagtctgtagtttgtattgat 43
|||||||||||||||||| |||||
Sbjct: 205841 aagtagtctgtagtttgtgttgat 205864
>dbj| AP007174.1 | Aspergillus oryzae RIB40 genomic DNA, SC103
Length = 1282697
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 369 tccagaggtgctagcacaat 388
||||||||||||||||||||
Sbjct: 623459 tccagaggtgctagcacaat 623478
>ref| NM_001024205.1 | Mus musculus nuclear fragile X mental retardation protein interacting
protein 2 (Nufip2), mRNA
Length = 10383
Score = 40.1 bits (20), Expect = 8.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 aagtagtctgtagtttgtattgat 43
|||||||||||||||||| |||||
Sbjct: 7674 aagtagtctgtagtttgtgttgat 7697
>gb| AC024561.5 | Homo sapiens chromosome 5 clone CTB-94B10, complete sequence
Length = 155125
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 72 atcagggagaggaggaaaaa 91
||||||||||||||||||||
Sbjct: 75835 atcagggagaggaggaaaaa 75816
>gb| AE017285.1 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
Length = 3570858
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 230 tcccgggcaccgccccggtc 249
||||||||||||||||||||
Sbjct: 3235471 tcccgggcaccgccccggtc 3235490
>emb| AL929238.22 | Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
sequence
Length = 174226
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 agggagaggaggaaaaagaa 94
||||||||||||||||||||
Sbjct: 31913 agggagaggaggaaaaagaa 31932
>dbj| AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 40.1 bits (20), Expect = 8.5
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604
||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| ||||
Sbjct: 20599472 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 20599413
>dbj| AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ctgggtcgcagcctcccatg 457
||||||||||||||||||||
Sbjct: 19168586 ctgggtcgcagcctcccatg 19168605
>gb| AC010427.5 | Homo sapiens chromosome 5 clone CTD-2198K18, complete sequence
Length = 68883
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 186 cagcaggtgcatgtccacgc 205
||||||||||||||||||||
Sbjct: 12377 cagcaggtgcatgtccacgc 12358
>gb| AC026740.6 | Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence
Length = 201464
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 186 cagcaggtgcatgtccacgc 205
||||||||||||||||||||
Sbjct: 170526 cagcaggtgcatgtccacgc 170507
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 186 cagcaggtgcatgtccacgc 205
||||||||||||||||||||
Sbjct: 78463 cagcaggtgcatgtccacgc 78444
>dbj| AP003350.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0702H08
Length = 166899
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ctgggtcgcagcctcccatg 457
||||||||||||||||||||
Sbjct: 134003 ctgggtcgcagcctcccatg 134022
>ref| XM_341358.2 | PREDICTED: Rattus norvegicus similar to diacylglycerol kinase eta
(LOC361076), mRNA
Length = 6506
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 516 cactttggcaacaaagtcct 535
||||||||||||||||||||
Sbjct: 4038 cactttggcaacaaagtcct 4019
>gb| AF250284.1 |AF250284 Amsacta moorei entomopoxvirus, complete genome
Length = 232392
Score = 40.1 bits (20), Expect = 8.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 26 tctgtagtttgtattgataataat 49
|||||| |||||||||||||||||
Sbjct: 32291 tctgtaatttgtattgataataat 32314
>gb| AC140260.3 | Mus musculus BAC clone RP23-311O16 from 6, complete sequence
Length = 252791
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 152 accagccatatacaggattc 171
||||||||||||||||||||
Sbjct: 146818 accagccatatacaggattc 146799
>gb| CP000159.1 | Salinibacter ruber DSM 13855, complete genome
Length = 3551823
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 411 gtccagctccgagtgctcca 430
||||||||||||||||||||
Sbjct: 2902169 gtccagctccgagtgctcca 2902188
>gb| CP000192.1 | Drosophila melanogaster genomic scaffold 211000022280527
Length = 181593
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 360 gacactgtttccagaggtgc 379
||||||||||||||||||||
Sbjct: 140506 gacactgtttccagaggtgc 140525
>gb| U82323.1 |DVU82323 Desulfovibrio vulgaris ferric uptake regulatory protein homolog
(fur), rubrerythrin (rbr) and rubredoxin-like protein
(rdl) genes, complete cds
Length = 3270
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 230 tcccgggcaccgccccggtc 249
||||||||||||||||||||
Sbjct: 3025 tcccgggcaccgccccggtc 3006
>gb| U30297.1 |AMU30297 Amsacta moorei entomopoxvirus filament-associated late protein,
FALPE, complete cds
Length = 779
Score = 40.1 bits (20), Expect = 8.5
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 26 tctgtagtttgtattgataataat 49
|||||| |||||||||||||||||
Sbjct: 299 tctgtaatttgtattgataataat 276
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,664,098
Number of Sequences: 3902068
Number of extensions: 5664098
Number of successful extensions: 108716
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108424
Number of HSP's gapped (non-prelim): 289
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)