Clone Name | rbah61k11 |
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Clone Library Name | barley_pub |
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 170 bits (86), Expect = 3e-39 Identities = 191/226 (84%) Strand = Plus / Minus Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454 |||| |||| ||||||||||||||| |||||||||||||| ||||| || || ||||||| Sbjct: 84495 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 84436 Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514 | || | |||||||| |||||||||||||||||| || || || || | ||||||||||| Sbjct: 84435 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 84376 Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574 ||||||| || ||||||||||| || || | ||||||| ||||| || ||||| |||| Sbjct: 84375 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 84316 Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620 | || ||||| ||||| || ||||||||||| |||||||||||||| Sbjct: 84315 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 84270 Score = 137 bits (69), Expect = 5e-29 Identities = 165/197 (83%) Strand = Plus / Minus Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207 ||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| |||| Sbjct: 84754 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 84695 Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267 |||||||| ||||| || ||||| ||||| | || ||||| ||||| | ||||||||| Sbjct: 84694 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 84635 Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327 |||| ||||||||||||||||| || || || || ||||| || ||||| |||||||| Sbjct: 84634 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 84575 Query: 328 ggcaacgaggctgattt 344 ||||||||||||||||| Sbjct: 84574 ggcaacgaggctgattt 84558
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 170 bits (86), Expect = 3e-39 Identities = 191/226 (84%) Strand = Plus / Minus Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454 |||| |||| ||||||||||||||| |||||||||||||| ||||| || || ||||||| Sbjct: 2804688 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 2804629 Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514 | || | |||||||| |||||||||||||||||| || || || || | ||||||||||| Sbjct: 2804628 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 2804569 Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574 ||||||| || ||||||||||| || || | ||||||| ||||| || ||||| |||| Sbjct: 2804568 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 2804509 Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620 | || ||||| ||||| || ||||||||||| |||||||||||||| Sbjct: 2804508 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 2804463 Score = 137 bits (69), Expect = 5e-29 Identities = 165/197 (83%) Strand = Plus / Minus Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207 ||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| |||| Sbjct: 2804947 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 2804888 Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267 |||||||| ||||| || ||||| ||||| | || ||||| ||||| | ||||||||| Sbjct: 2804887 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 2804828 Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327 |||| ||||||||||||||||| || || || || ||||| || ||||| |||||||| Sbjct: 2804827 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 2804768 Query: 328 ggcaacgaggctgattt 344 ||||||||||||||||| Sbjct: 2804767 ggcaacgaggctgattt 2804751
>dbj|AK102797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108D09, full insert sequence Length = 2625 Score = 170 bits (86), Expect = 3e-39 Identities = 191/226 (84%) Strand = Plus / Minus Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454 |||| |||| ||||||||||||||| |||||||||||||| ||||| || || ||||||| Sbjct: 2141 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 2082 Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514 | || | |||||||| |||||||||||||||||| || || || || | ||||||||||| Sbjct: 2081 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 2022 Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574 ||||||| || ||||||||||| || || | ||||||| ||||| || ||||| |||| Sbjct: 2021 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 1962 Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620 | || ||||| ||||| || ||||||||||| |||||||||||||| Sbjct: 1961 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 1916 Score = 137 bits (69), Expect = 5e-29 Identities = 165/197 (83%) Strand = Plus / Minus Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207 ||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| |||| Sbjct: 2400 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 2341 Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267 |||||||| ||||| || ||||| ||||| | || ||||| ||||| | ||||||||| Sbjct: 2340 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 2281 Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327 |||| ||||||||||||||||| || || || || ||||| || ||||| |||||||| Sbjct: 2280 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 2221 Query: 328 ggcaacgaggctgattt 344 ||||||||||||||||| Sbjct: 2220 ggcaacgaggctgattt 2204
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 170 bits (86), Expect = 3e-39 Identities = 191/226 (84%) Strand = Plus / Minus Query: 395 tgctactcaggaccttgtccagctccgagtgctccatgaacctctgggtcgcagcctccc 454 |||| |||| ||||||||||||||| |||||||||||||| ||||| || || ||||||| Sbjct: 2813719 tgctgctcaagaccttgtccagctcggagtgctccatgaatctctgtgttgcggcctccc 2813660 Query: 455 atgaaaggttgtatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttcct 514 | || | |||||||| |||||||||||||||||| || || || || | ||||||||||| Sbjct: 2813659 aggataagttgtatctctgctcaggtgtgaggggttgtggatcgcgtgccattgcttcct 2813600 Query: 515 tcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctga 574 ||||||| || ||||||||||| || || | ||||||| ||||| || ||||| |||| Sbjct: 2813599 tcactttcgcgacaaagtcctccgatgttttatatgtcaaacagttcgggaatgacctga 2813540 Query: 575 agaattcattggatggatgatctgcgcagaccacaaacttacccat 620 | || ||||| ||||| || ||||||||||| |||||||||||||| Sbjct: 2813539 aaaaatcattcgatgggtggtctgcgcagacaacaaacttacccat 2813494 Score = 137 bits (69), Expect = 5e-29 Identities = 165/197 (83%) Strand = Plus / Minus Query: 148 tcttaccagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgcta 207 ||||||||||| ||||| || |||||||||||||| |||| ||||| | ||||| |||| Sbjct: 2813978 tcttaccagccgtatactgggttctgtacctgaggcggcaagaggtggaggtccaagcta 2813919 Query: 208 tgttgcttattgtagttcagggtcccgggcaccgccccggtcgacagccggaggagctcg 267 |||||||| ||||| || ||||| ||||| | || ||||| ||||| | ||||||||| Sbjct: 2813918 tgttgcttgttgtaattgagggtgccgggtattgctccggttgacagtctgaggagctca 2813859 Query: 268 ctgcccgtgaagcagtagtgggcaaatgctaggcccccatccacgatgtccgacatgttt 327 |||| ||||||||||||||||| || || || || ||||| || ||||| |||||||| Sbjct: 2813858 ttgccagtgaagcagtagtgggcgaaggccagcccaccatctaccatgtctgacatgttc 2813799 Query: 328 ggcaacgaggctgattt 344 ||||||||||||||||| Sbjct: 2813798 ggcaacgaggctgattt 2813782
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 4e-08 Identities = 172/218 (78%) Strand = Plus / Minus Query: 406 accttgtccagctccgagtgctccatgaacctctgggtcgcagcctcccatgaaaggttg 465 |||||||| || || |||| |||||||||||||| ||| || |||||||| || |||||| Sbjct: 19996301 accttgtcgaggtctgagtactccatgaacctctcggttgctgcctcccacgacaggttg 19996242 Query: 466 tatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttccttcactttggca 525 || | ||||| || ||||| |||||||| || | || ||| || || ||||| |||| Sbjct: 19996241 tacctttgctccggggtgagaggctggggttccctggccatggcctcgttcaccctggcg 19996182 Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585 || || ||||| | ||| |||| ||||||||||| || || || ||||||| || || Sbjct: 19996181 acgaactcctccggggtcctgtacgtcaggcagttcgggaacgacatgaagaactcgttc 19996122 Query: 586 gatggatgatctgcgcagaccacaaacttacccatcgc 623 |||||||| || ||||||| || ||||| |||||||| Sbjct: 19996121 gatggatgctccgcgcagatgacgaacttccccatcgc 19996084 Score = 40.1 bits (20), Expect = 8.5 Identities = 53/64 (82%) Strand = Plus / Minus Query: 152 accagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgctatgtt 211 |||| ||||||||||| | ||| || ||||| ||||| ||| ||||||||||| |||| Sbjct: 19996537 accaaccatatacagggtgctgcacttgaggcggcaggaggcccatgtccacgcagtgtt 19996478 Query: 212 gctt 215 |||| Sbjct: 19996477 gctt 19996474
>gb|AY186241.1| Xerophyta humilis digalactosyldiacylglycerol synthase (dgd) mRNA, partial cds Length = 1398 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 523 gcaacaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattca 582 ||||| ||||||| ||| ||| |||| |||| |||||||||||||| ||||||| ||| Sbjct: 1034 gcaacgaagtcctttgatgtcttgtaggtcaagcagtttggaaatgccatgaagaactca 975 Query: 583 ttggatggatgatctgcgcagaccacaaacttacccat 620 || ||||| ||||| || |||| ||||||||| ||||| Sbjct: 974 tttgatgggtgatcagcacagatcacaaacttccccat 937
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 67.9 bits (34), Expect = 4e-08 Identities = 172/218 (78%) Strand = Plus / Minus Query: 406 accttgtccagctccgagtgctccatgaacctctgggtcgcagcctcccatgaaaggttg 465 |||||||| || || |||| |||||||||||||| ||| || |||||||| || |||||| Sbjct: 100422 accttgtcgaggtctgagtactccatgaacctctcggttgctgcctcccacgacaggttg 100363 Query: 466 tatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttccttcactttggca 525 || | ||||| || ||||| |||||||| || | || ||| || || ||||| |||| Sbjct: 100362 tacctttgctccggggtgagaggctggggttccctggccatggcctcgttcaccctggcg 100303 Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585 || || ||||| | ||| |||| ||||||||||| || || || ||||||| || || Sbjct: 100302 acgaactcctccggggtcctgtacgtcaggcagttcgggaacgacatgaagaactcgttc 100243 Query: 586 gatggatgatctgcgcagaccacaaacttacccatcgc 623 |||||||| || ||||||| || ||||| |||||||| Sbjct: 100242 gatggatgctccgcgcagatgacgaacttccccatcgc 100205 Score = 40.1 bits (20), Expect = 8.5 Identities = 53/64 (82%) Strand = Plus / Minus Query: 152 accagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgctatgtt 211 |||| ||||||||||| | ||| || ||||| ||||| ||| ||||||||||| |||| Sbjct: 100658 accaaccatatacagggtgctgcacttgaggcggcaggaggcccatgtccacgcagtgtt 100599 Query: 212 gctt 215 |||| Sbjct: 100598 gctt 100595
>dbj|AK120285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049P04, full insert sequence Length = 2731 Score = 67.9 bits (34), Expect = 4e-08 Identities = 172/218 (78%) Strand = Plus / Minus Query: 406 accttgtccagctccgagtgctccatgaacctctgggtcgcagcctcccatgaaaggttg 465 |||||||| || || |||| |||||||||||||| ||| || |||||||| || |||||| Sbjct: 2242 accttgtcgaggtctgagtactccatgaacctctcggttgctgcctcccacgacaggttg 2183 Query: 466 tatcgctgctcaggtgtgaggggctgggggtcacgggtcattgcttccttcactttggca 525 || | ||||| || ||||| |||||||| || | || ||| || || ||||| |||| Sbjct: 2182 tacctttgctccggggtgagaggctggggttccctggccatggcctcgttcaccctggcg 2123 Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585 || || ||||| | ||| |||| ||||||||||| || || || ||||||| || || Sbjct: 2122 acgaactcctccggggtcctgtacgtcaggcagttcgggaacgacatgaagaactcgttc 2063 Query: 586 gatggatgatctgcgcagaccacaaacttacccatcgc 623 |||||||| || ||||||| || ||||| |||||||| Sbjct: 2062 gatggatgctccgcgcagatgacgaacttccccatcgc 2025 Score = 40.1 bits (20), Expect = 8.5 Identities = 53/64 (82%) Strand = Plus / Minus Query: 152 accagccatatacaggattctgtacctgagggggcagcaggtgcatgtccacgctatgtt 211 |||| ||||||||||| | ||| || ||||| ||||| ||| ||||||||||| |||| Sbjct: 2478 accaaccatatacagggtgctgcacttgaggcggcaggaggcccatgtccacgcagtgtt 2419 Query: 212 gctt 215 |||| Sbjct: 2418 gctt 2415
>ref|NM_111999.2| Arabidopsis thaliana DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); galactolipid galactosyltransferase/ transferase, transferring glycosyl groups AT3G11670 (DGD1) transcript variant AT3G11670.1 mRNA, complete cds Length = 2670 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 2153 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2094 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 2093 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 2035
>gb|AC009918.5|ATAC009918 Arabidopsis thaliana chromosome III BAC T19F11 genomic sequence, complete sequence Length = 45173 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 18113 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 18172 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 18173 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 18231
>gb|AY101521.1| Arabidopsis thaliana AT3g11670/T19F11_7 mRNA, complete cds Length = 2427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 2102 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2043 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 2042 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 1984
>gb|AY075649.1| Arabidopsis thaliana AT3g11670/T19F11_7 mRNA, complete cds Length = 2670 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 2153 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2094 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 2093 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 2035
>emb|BX823915.1|CNS0A4T4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS92ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1034 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 509 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 450 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 449 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 391
>gb|AF149842.1|AF149842 Arabidopsis thaliana digalactosyldiacylglycerol synthase (DGD1) gene, complete cds Length = 5128 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 3754 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 3695 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 3694 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 3636
>gb|AF149841.1|AF149841 Arabidopsis thaliana digalactosyldiacylglycerol synthase (DGD1) mRNA, complete cds Length = 2643 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 502 gtcattgcttccttcactttggcaacaaagtcctctgacgtcgtgtatgtcaggcagttt 561 ||||||||||| | |||||||| |||||||| || || || |||| || | |||||| Sbjct: 2163 gtcattgcttcttgcactttggacacaaagtcttcggatgttttgtaagttaagcagttc 2104 Query: 562 ggaaatgatctgaagaattcattggatggatgatctgcgcagaccacaaacttacccat 620 || |||||||| |||||||| || || || |||||||| || ||||||||||| ||||| Sbjct: 2103 gggaatgatctaaagaattcgtttgaagggtgatctgcacacaccacaaacttccccat 2045
>gb|AY635907.1| Glycine max digalactosyldiacylglycerol synthase 1 (DGD1) mRNA, complete cds Length = 2845 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 526 acaaagtcctctgacgtcgtgtatgtcaggcagtttggaaatgatctgaagaattcattg 585 |||||||| || || ||| |||| |||| ||||| |||||||| |||||||| ||||| Sbjct: 2087 acaaagtcttcggatgtcctgtaagtcaaacagttgggaaatgacctgaagaactcattt 2028 Query: 586 gatggatgatc 596 ||||||||||| Sbjct: 2027 gatggatgatc 2017
>gb|AY651024.1| Nicotiana tabacum digalactosyldiacylglycerol synthase (dgd1) mRNA, partial cds Length = 1727 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 427 tccatgaacctctgggtcgcagcctcccatgaaaggttgtatcgctgctcaggtgtgag 485 |||||||| |||||||| ||||| ||||||||||| |||||| ||| ||| || ||||| Sbjct: 1151 tccatgaatctctgggtagcagcttcccatgaaagcttgtattgctcctcgggagtgag 1093
>ref|XM_847365.1| PREDICTED: Canis familiaris similar to SLAM family member 7 (LOC609992), mRNA Length = 2435 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 479 gtgtgaggggctgggggtcacgggt 503 ||||||||||||||||||||||||| Sbjct: 1467 gtgtgaggggctgggggtcacgggt 1443
>gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, RP23-193K14, complete sequence Length = 214157 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 574 aagaattcattggatggatgat 595 |||||||||||||||||||||| Sbjct: 67569 aagaattcattggatggatgat 67590
>emb|AL645851.8| Mouse DNA sequence from clone RP23-193A16 on chromosome 11, complete sequence Length = 112037 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 574 aagaattcattggatggatgat 595 |||||||||||||||||||||| Sbjct: 44460 aagaattcattggatggatgat 44439
>gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, complete sequence Length = 187158 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gttggcatcagggagaggagg 86 ||||||||||||||||||||| Sbjct: 32304 gttggcatcagggagaggagg 32324
>emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM domains containing protein 1 and KIAA0851 gene Length = 87434 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 agtagtctgtagtttgtattg 41 ||||||||||||||||||||| Sbjct: 80817 agtagtctgtagtttgtattg 80837
>gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 168208 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 acaatcaccattgctactcag 404 ||||||||||||||||||||| Sbjct: 123481 acaatcaccattgctactcag 123501
>gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, complete sequence Length = 176741 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 agtagtctgtagtttgtattg 41 ||||||||||||||||||||| Sbjct: 87251 agtagtctgtagtttgtattg 87271
>emb|AJ289880.1|HSA289880 Homo sapiens KIAA0851 gene (partial), XT3 gene and LZTFL1 gene Length = 142281 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 agtagtctgtagtttgtattg 41 ||||||||||||||||||||| Sbjct: 25634 agtagtctgtagtttgtattg 25654
>gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence Length = 176968 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 agtagtctgtagtttgtattg 41 ||||||||||||||||||||| Sbjct: 170284 agtagtctgtagtttgtattg 170264
>gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosome 17, complete sequence Length = 203927 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 agggagaggaggaaaaagaa 94 |||||||||||||||||||| Sbjct: 180676 agggagaggaggaaaaagaa 180695
>ref|XM_472431.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2328 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604 ||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| |||| Sbjct: 1939 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 1880
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ctcaggaccttgtccagctc 419 |||||||||||||||||||| Sbjct: 5062635 ctcaggaccttgtccagctc 5062654
>ref|XM_534327.2| PREDICTED: Canis familiaris similar to Protein C20orf26 (LOC477136), mRNA Length = 3756 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 aggctgatttcctcatcttc 354 |||||||||||||||||||| Sbjct: 3617 aggctgatttcctcatcttc 3598
>gb|AC111280.7| Rattus norvegicus 13 BAC CH230-51N9 (Children's Hospital Oakland Research Institute) complete sequence Length = 216192 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gagggggcagcaggtgcatg 198 |||||||||||||||||||| Sbjct: 196229 gagggggcagcaggtgcatg 196248
>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence Length = 200657 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 agggagaggaggaaaaagaa 94 |||||||||||||||||||| Sbjct: 138128 agggagaggaggaaaaagaa 138147
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604 ||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| |||| Sbjct: 33806 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 33747
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604 ||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| |||| Sbjct: 110100 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 110041
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 aagtagtctgtagtttgtattgat 43 |||||||||||||||||| ||||| Sbjct: 205841 aagtagtctgtagtttgtgttgat 205864
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 tccagaggtgctagcacaat 388 |||||||||||||||||||| Sbjct: 623459 tccagaggtgctagcacaat 623478
>ref|NM_001024205.1| Mus musculus nuclear fragile X mental retardation protein interacting protein 2 (Nufip2), mRNA Length = 10383 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 aagtagtctgtagtttgtattgat 43 |||||||||||||||||| ||||| Sbjct: 7674 aagtagtctgtagtttgtgttgat 7697
>gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, complete sequence Length = 155125 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 atcagggagaggaggaaaaa 91 |||||||||||||||||||| Sbjct: 75835 atcagggagaggaggaaaaa 75816
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcccgggcaccgccccggtc 249 |||||||||||||||||||| Sbjct: 3235471 tcccgggcaccgccccggtc 3235490
>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete sequence Length = 174226 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 agggagaggaggaaaaagaa 94 |||||||||||||||||||| Sbjct: 31913 agggagaggaggaaaaagaa 31932
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 545 tgtatgtcaggcagtttggaaatgatctgaagaattcattggatggatgatctgcgcaga 604 ||||||| | |||||| || ||||| |||| ||||| || |||||||||||||| |||| Sbjct: 20599472 tgtatgttaagcagttggggaatgacttgaaaaattcgtttgatggatgatctgcacaga 20599413
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 ctgggtcgcagcctcccatg 457 |||||||||||||||||||| Sbjct: 19168586 ctgggtcgcagcctcccatg 19168605
>gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, complete sequence Length = 68883 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcaggtgcatgtccacgc 205 |||||||||||||||||||| Sbjct: 12377 cagcaggtgcatgtccacgc 12358
>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence Length = 201464 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcaggtgcatgtccacgc 205 |||||||||||||||||||| Sbjct: 170526 cagcaggtgcatgtccacgc 170507 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcaggtgcatgtccacgc 205 |||||||||||||||||||| Sbjct: 78463 cagcaggtgcatgtccacgc 78444
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 ctgggtcgcagcctcccatg 457 |||||||||||||||||||| Sbjct: 134003 ctgggtcgcagcctcccatg 134022
>ref|XM_341358.2| PREDICTED: Rattus norvegicus similar to diacylglycerol kinase eta (LOC361076), mRNA Length = 6506 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cactttggcaacaaagtcct 535 |||||||||||||||||||| Sbjct: 4038 cactttggcaacaaagtcct 4019
>gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete genome Length = 232392 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tctgtagtttgtattgataataat 49 |||||| ||||||||||||||||| Sbjct: 32291 tctgtaatttgtattgataataat 32314
>gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, complete sequence Length = 252791 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 accagccatatacaggattc 171 |||||||||||||||||||| Sbjct: 146818 accagccatatacaggattc 146799
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 gtccagctccgagtgctcca 430 |||||||||||||||||||| Sbjct: 2902169 gtccagctccgagtgctcca 2902188
>gb|CP000192.1| Drosophila melanogaster genomic scaffold 211000022280527 Length = 181593 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gacactgtttccagaggtgc 379 |||||||||||||||||||| Sbjct: 140506 gacactgtttccagaggtgc 140525
>gb|U82323.1|DVU82323 Desulfovibrio vulgaris ferric uptake regulatory protein homolog (fur), rubrerythrin (rbr) and rubredoxin-like protein (rdl) genes, complete cds Length = 3270 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcccgggcaccgccccggtc 249 |||||||||||||||||||| Sbjct: 3025 tcccgggcaccgccccggtc 3006
>gb|U30297.1|AMU30297 Amsacta moorei entomopoxvirus filament-associated late protein, FALPE, complete cds Length = 779 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tctgtagtttgtattgataataat 49 |||||| ||||||||||||||||| Sbjct: 299 tctgtaatttgtattgataataat 276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,664,098 Number of Sequences: 3902068 Number of extensions: 5664098 Number of successful extensions: 108716 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108424 Number of HSP's gapped (non-prelim): 289 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)