>CCR4_YEAST (P31384) Glucose-repressible alcohol dehydrogenase transcriptional|
           effector (EC 3.1.-.-) (Cytoplasmic deadenylase) (Carbon
           catabolite repressor protein 4)
          Length = 837

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
 Frame = -3

Query: 417 EPEFTNCTPGFTGTLDYIFLSGDNSIKPTTLLRIPRG--GSPDVEG-----GLPNFHHPS 259
           E  FTN TP FT  +DYI+ S       T  LR+ RG  G  D E      G PN   PS
Sbjct: 765 ELPFTNFTPSFTDVIDYIWFS-------THALRV-RGLLGEVDPEYESKFIGFPNDKFPS 816

Query: 258 DHLPIGADFQ 229
           DH+P+ A F+
Sbjct: 817 DHIPLLARFE 826

>NOCT_XENLA (P79942) Nocturnin (Rhythmic message 1) (RM1)|
          Length = 388

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -3

Query: 417 EPEFTNCTPGFTG----TLDYIFLSGDNSIKPTTLLRIPRGGSPDVEGGLPNFHHPSDHL 250
           EP +T      TG    TLDYI+ S  ++++    L +P          LP+F++PSDHL
Sbjct: 315 EPPYTTWKIRTTGESCHTLDYIWYS-QHALRVNAALGLPTEEQIG-PNRLPSFNYPSDHL 372

Query: 249 PIGADF 232
            +  DF
Sbjct: 373 SLVCDF 378

>ADRB3_RAT (P26255) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 400

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -2

Query: 325 TPNPTRGFPGCGRRPAQLPPS**SLADRRRFSAAQQLASWCLGCIFPTVAANGLRNVWPW 146
           TP  + G P CGRRPA+L P    L + R       +      C  P   AN LR +   
Sbjct: 262 TPTASDGVPSCGRRPARLLP----LGEHRALRTLGLIMGIFSLCWLPFFLANVLRALVGP 317

Query: 145 SACSLGLAIRL 113
           S    G+ I L
Sbjct: 318 SLVPSGVFIAL 328

>NGL1_YEAST (Q08213) RNA exonuclease NGL1 (EC 3.1.-.-)|
          Length = 363

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 285 GLPNFHHPSDHLPIGADFQ 229
           GLPN +HPSDH+P+  +F+
Sbjct: 343 GLPNENHPSDHIPLLTEFK 361

>ADRB3_HUMAN (P13945) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 408

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -2

Query: 316 PTRGFPGCGRRPAQLPPS**SLADRRRFSAAQQLASWCLGCIFPTVAANGLR 161
           P  G P CGRRPA+L P    L + R       +      C  P   AN LR
Sbjct: 268 PPEGVPACGRRPARLLP----LREHRALCTLGLIMGTFTLCWLPFFLANVLR 315

>PDR13_ARATH (Q7PC83) Probable pleiotropic drug resistance protein 13|
          Length = 1397

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 335  LLPYSESHEGVPRMWKEACPTSTILVITCRSA 240
            ++ Y ES  GVP++ K   P + +L ITC+SA
Sbjct: 1041 VIKYFESIPGVPKVQKNCNPATWMLDITCKSA 1072

>NOCT_MOUSE (O35710) Nocturnin (CCR4 protein homolog)|
          Length = 429

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -3

Query: 417 EPEFTNCTPGFTG----TLDYIFLSGDNSIKPTTLLRIPRGGSPDVEGGLPNFHHPSDHL 250
           EP +T      +G    TLDYI+ S  +++  T+ L +           LP+FH+PSDHL
Sbjct: 356 EPPYTTWKIRTSGECRHTLDYIWYSR-HALSVTSALDLLTEEQIG-PNRLPSFHYPSDHL 413

Query: 249 PIGADF 232
            +  DF
Sbjct: 414 SLVCDF 419

>ADRB3_MOUSE (P25962) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 400

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 24/71 (33%), Positives = 29/71 (40%)
 Frame = -2

Query: 325 TPNPTRGFPGCGRRPAQLPPS**SLADRRRFSAAQQLASWCLGCIFPTVAANGLRNVWPW 146
           TP    G P CGRRPA+L P    L + R       +      C  P   AN LR +   
Sbjct: 262 TPAAPDGVPPCGRRPARLLP----LREHRALRTLGLIMGIFSLCWLPFFLANVLRALAGP 317

Query: 145 SACSLGLAIRL 113
           S    G+ I L
Sbjct: 318 SLVPSGVFIAL 328

>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1404

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
 Frame = -3

Query: 351  DNSIKPT---TLLRIPR--GGSPDVEGGLP 277
            DNSIK +   TL RIP+  GG+ D+ GGLP
Sbjct: 1110 DNSIKISSGDTLARIPQESGGTKDITGGLP 1139

>FP1_MYTCO (Q25434) Adhesive plaque matrix protein precursor (Foot protein 1)|
           (MCFP1)
          Length = 872

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 403 KLHPRLYRNIGLYIPVGRQFNKTYYPTPNPTRGFPGCGRRPAQLPPS 263
           K +P+ Y++ G Y P   Q  KTY P+  P + +P   +     PP+
Sbjct: 666 KSYPQAYKSKGSY-PPSYQPKKTYPPSYKPKKTYPPTYKPKISYPPT 711

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 18  SRFHSYNQYSVIKCQFLLKKHNGQKLHY-CSHGSL 119
           SRFHS N  + +    L ++ NG   HY CS G L
Sbjct: 825 SRFHSMNSMNTLHPPSLSERRNGGLQHYTCSDGGL 859

>NGL2_YEAST (Q03264) RNA exonuclease NGL2 (EC 3.1.-.-) (Carbon catabolite|
           repressor protein 4 homolog)
          Length = 515

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
 Frame = -3

Query: 417 EPEFTNCTPGFTGTLDYIF-------------------LSGDNSIKPTTLLRIPRGGSPD 295
           EPE +N    + G LDY+F                      +N +K    LR+P G    
Sbjct: 431 EPEISNWANTWRGLLDYLFYVKKWDPQSNCQEVETLGDFEKENKVKCRGFLRMPPGNEMT 490

Query: 294 VEGGLPNFHHPSDHLPIGADFQ 229
             G      + SDHL +  D +
Sbjct: 491 KHGQPHVGEYASDHLSMVCDLE 512

>PYRI_NEIMB (Q9K1K9) Aspartate carbamoyltransferase regulatory chain|
          Length = 152

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +3

Query: 51  IKCQFLLKKHNGQ---KLHYC 104
           +K +F +KKHNGQ   K HYC
Sbjct: 120 VKSRFYVKKHNGQTRLKCHYC 140

>PYRI_NEIMA (Q9JWY6) Aspartate carbamoyltransferase regulatory chain|
          Length = 152

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +3

Query: 51  IKCQFLLKKHNGQ---KLHYC 104
           +K +F +KKHNGQ   K HYC
Sbjct: 120 VKSRFYVKKHNGQTRLKCHYC 140

>ADRB3_MERUN (O70432) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor) (Fragment)
          Length = 167

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
 Frame = -2

Query: 388 LYRNIGLYIPVGRQFNKTYYPTP------NPTRGFPGCGRRPAQLPPS**SLADRRRFSA 227
           L R +G + P     + +  P+P          G P CGRRPA+L P    L + R    
Sbjct: 60  LRRELGRFPPEESPRSPSRSPSPVAGGTGEAPDGVPSCGRRPARLLP----LREHRALRT 115

Query: 226 AQQLASWCLGCIFPTVAANGLR 161
              +      C  P   AN LR
Sbjct: 116 LGLIMGIFSLCWLPFFLANVLR 137

>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)|
           (B-cell adapter containing SH2 domain protein) (B-cell
           adapter containing Src homology 2 domain protein) (Src
           homology 2 domain-containing leukocyte protein of 65
           kDa) (SLP-65)
          Length = 456

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 339 KPTTLLRIPRGGSPDVEGGLPNF 271
           KP  L R   GG+P V+G LP+F
Sbjct: 306 KPIPLPRFTEGGNPTVDGPLPSF 328

>SULF1_DROME (Q9VEX0) Extracellular sulfatase SULF-1 homolog precursor (EC|
            3.1.6.-) (DmSulf-1)
          Length = 1114

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 99   YCSHGS-LMANPRLQADHGQTFRRPFAATVGKMQPRH----QLASC*AAENRRRSASDH* 263
            YC   + L+    L  D  +T  R    T G+    H    QL SC       R   +H 
Sbjct: 962  YCEFTTGLITFYNLTIDRFETINRAAGLTPGERSHMHDALDQLKSCRGRSCSIRRHQNHL 1021

Query: 264  DGGSWAGLLP 293
            +GGS A LLP
Sbjct: 1022 EGGSSAPLLP 1031

>RNFA_HAEDU (Q7VNT6) Electron transport complex protein rnfA|
          Length = 193

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 409 VHKLHPRLYRNIGLYIPV 356
           VHK  P LYR +G+Y+P+
Sbjct: 92  VHKTSPTLYRLLGIYLPL 109

>NOCT_HUMAN (Q9UK39) Nocturnin (CCR4 protein homolog)|
          Length = 431

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -3

Query: 417 EPEFTNCTPGFTG----TLDYIFLSGD--NSIKPTTLLRIPRGGSPDVEGGLPNFHHPSD 256
           EP +T      +G    TLDYI+ S    N      LL   + G       LP+F++PSD
Sbjct: 358 EPPYTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGP----NRLPSFNYPSD 413

Query: 255 HLPIGADF 232
           HL +  DF
Sbjct: 414 HLSLVCDF 421


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,915,063
Number of Sequences: 219361
Number of extensions: 1502454
Number of successful extensions: 3859
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3853
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)