ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61k10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475179.1| Oryza sativa (japonica cultivar-group), predic... 117 3e-23
2gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
3gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
5dbj|AK104776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
6dbj|AK098939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
7dbj|AK060960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
8gb|AY112518.1| Zea mays CL340_1 mRNA sequence 84 4e-13
9gb|AY022313.1| Oryza sativa microsatellite MRG4638 containing (A... 42 1.4
10gb|AC117505.6| Homo sapiens 12 BAC RP11-162D11 (Roswell Park Can... 42 1.4
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
12gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, comple... 42 1.4
13dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14dbj|AK111255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
15gb|AY693474.1| Cheilopogon spilonotopterus isolate N63b 16S ribo... 40 5.6
16gb|AY693473.1| Cheilopogon spilonotopterus isolate N63a 16S ribo... 40 5.6
17gb|AY693468.1| Cheilopogon dorsomacula isolate N60b 16S ribosoma... 40 5.6
18gb|AY693467.1| Cheilopogon dorsomacula isolate N60a 16S ribosoma... 40 5.6
19gb|AY693464.1| Prognichthys tringa isolate N58b 16S ribosomal RN... 40 5.6
20gb|AY693463.1| Prognichthys tringa isolate N58a 16S ribosomal RN... 40 5.6
21gb|AY693462.1| Hirundichthys marginatus isolate N57b 16S ribosom... 40 5.6
22gb|AY693461.1| Hirundichthys marginatus isolate N57a 16S ribosom... 40 5.6
23ref|XM_630716.1| Dictyostelium discoideum hypothetical protein (... 40 5.6
24gb|AY304548.1| Homo sapiens CHEK1 gene, exons 1, 2 and partial cds 40 5.6
25gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence 40 5.6
26gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome... 40 5.6
27gb|AC124607.4| Mus musculus BAC clone RP23-84H10 from chromosome... 40 5.6
28gb|AC146608.2| Mus musculus BAC clone RP23-159D24 from chromosom... 40 5.6
29ref|XM_809159.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.6
30emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com... 40 5.6
31gb|AC159480.5| Mus musculus 6 BAC RP24-470K4 (Roswell Park Cance... 40 5.6
32dbj|AB182653.1| Cypselurus hiraii mitochondrial DNA, complete ge... 40 5.6
33gb|AC154904.4| Mus musculus BAC clone RP23-416C3 from chromosome... 40 5.6
34gb|AF243947.1|AF243947 Cypselurus melanurus isolate N10b 16S lar... 40 5.6
35gb|AF243946.1|AF243946 Cypselurus melanurus isolate N10a 16S lar... 40 5.6
36dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
37dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.6
38gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosom... 40 5.6
39emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chro... 40 5.6 
>ref|XM_475179.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 229  ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
            |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 1149 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1090

                                                                        
Query: 289  ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
            ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 1089 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1030

                                                                        
Query: 349  gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
            | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 1029 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 970

                       
Query: 409  ctccggctccc 419
            ||| |||||||
Sbjct: 969  ctctggctccc 959
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>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05,
              complete sequence
          Length = 178013

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Plus

                                                                          
Query: 229    ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
              |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 175082 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 175141

                                                                          
Query: 289    ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
              ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 175142 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 175201

                                                                          
Query: 349    gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
              | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 175202 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 175261

                         
Query: 409    ctccggctccc 419
              ||| |||||||
Sbjct: 175262 ctctggctccc 175272
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>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01,
            complete sequence
          Length = 88352

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Plus

                                                                        
Query: 229  ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
            |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 7370 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 7429

                                                                        
Query: 289  ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
            ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 7430 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 7489

                                                                        
Query: 349  gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
            | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 7490 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 7549

                       
Query: 409  ctccggctccc 419
            ||| |||||||
Sbjct: 7550 ctctggctccc 7560
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Plus

                                                                            
Query: 229      ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
                |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 18701967 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 18702026

                                                                            
Query: 289      ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
                ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 18702027 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 18702086

                                                                            
Query: 349      gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
                | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 18702087 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 18702146

                           
Query: 409      ctccggctccc 419
                ||| |||||||
Sbjct: 18702147 ctctggctccc 18702157
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>dbj|AK104776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B12, full
            insert sequence
          Length = 1430

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 229  ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
            |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 1298 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1239

                                                                        
Query: 289  ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
            ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 1238 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1179

                                                                        
Query: 349  gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
            | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 1178 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 1119

                       
Query: 409  ctccggctccc 419
            ||| |||||||
Sbjct: 1118 ctctggctccc 1108
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>dbj|AK098939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043C01, full
            insert sequence
          Length = 1540

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 229  ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
            |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 1270 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1211

                                                                        
Query: 289  ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
            ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 1210 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1151

                                                                        
Query: 349  gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
            | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 1150 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 1091

                       
Query: 409  ctccggctccc 419
            ||| |||||||
Sbjct: 1090 ctctggctccc 1080
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>dbj|AK060960.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H11, full
            insert sequence
          Length = 1430

 Score =  117 bits (59), Expect = 3e-23
 Identities = 158/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 229  ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 288
            |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 1298 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1239

                                                                        
Query: 289  ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 348
            ||  || || |  ||| |||||||||| || || |||||  | |||||||||| |||| |
Sbjct: 1238 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1179

                                                                        
Query: 349  gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 408
            | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| |||||
Sbjct: 1178 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 1119

                       
Query: 409  ctccggctccc 419
            ||| |||||||
Sbjct: 1118 ctctggctccc 1108
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>gb|AY112518.1| Zea mays CL340_1 mRNA sequence
          Length = 1575

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 135/166 (81%)
 Strand = Plus / Minus

                                                                        
Query: 254  tgatcactaggatggtggaagttgggcaggcctccttccacatccggggaaccccctcgt 313
            ||||| ||||||||  | |||||||||| |||||||| |||||||   ||| ||||||| 
Sbjct: 1098 tgatcgctaggatgtcgaaagttgggcaagcctcctttcacatcctcagaatcccctcgc 1039

                                                                        
Query: 314  gggattcggagtagggtagtaggttttattgaattgtcgcccgacaggaatatatagtcc 373
            || |  || |||||| ||||||||||||| ||| |  |  |||||| |||||| ||||||
Sbjct: 1038 ggcaaacgaagtaggctagtaggttttatcgaactaccatccgacaagaatatgtagtcc 979

                                                          
Query: 374  aatgttccggtaaagcctggggtgcagtttgtgaactccggctccc 419
            | |||||||||||| || || ||| |||||||| |||| |||||||
Sbjct: 978  agtgttccggtaaaaccaggagtgtagtttgtgtactctggctccc 933
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>gb|AY022313.1| Oryza sativa microsatellite MRG4638 containing (AAG)X13, genomic
           sequence
          Length = 239

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gctagctagctgctgagcagc 229
           |||||||||||||||||||||
Sbjct: 225 gctagctagctgctgagcagc 205
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>gb|AC117505.6| Homo sapiens 12 BAC RP11-162D11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 24701

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 260   ctaggatggtggaagttgggc 280
             |||||||||||||||||||||
Sbjct: 13059 ctaggatggtggaagttgggc 13079
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 209      gctagctagctgctgagcagc 229
                |||||||||||||||||||||
Sbjct: 20931953 gctagctagctgctgagcagc 20931973



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 206      ccagctagctagctgctgag 225
                ||||||||||||||||||||
Sbjct: 33298725 ccagctagctagctgctgag 33298744
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>gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, complete sequence
          Length = 111078

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 275   ttgggcaggcctccttccaca 295
             |||||||||||||||||||||
Sbjct: 15651 ttgggcaggcctccttccaca 15631
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>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1110C07
          Length = 173859

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    gctagctagctgctgagcagc 229
              |||||||||||||||||||||
Sbjct: 150395 gctagctagctgctgagcagc 150415
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>dbj|AK111255.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E06, full
           insert sequence
          Length = 974

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 209 gctagctagctgctgagcagc 229
           |||||||||||||||||||||
Sbjct: 55  gctagctagctgctgagcagc 75
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>gb|AY693474.1| Cheilopogon spilonotopterus isolate N63b 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 524

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693473.1| Cheilopogon spilonotopterus isolate N63a 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 524

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693468.1| Cheilopogon dorsomacula isolate N60b 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693467.1| Cheilopogon dorsomacula isolate N60a 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693464.1| Prognichthys tringa isolate N58b 16S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693463.1| Prognichthys tringa isolate N58a 16S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693462.1| Hirundichthys marginatus isolate N57b 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AY693461.1| Hirundichthys marginatus isolate N57a 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>ref|XM_630716.1| Dictyostelium discoideum hypothetical protein (DDB0219551), partial
            mRNA
          Length = 5661

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   tatcaaatgtcaattccttt 69
            ||||||||||||||||||||
Sbjct: 2899 tatcaaatgtcaattccttt 2880
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>gb|AY304548.1| Homo sapiens CHEK1 gene, exons 1, 2 and partial cds
          Length = 10200

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 tagctgctgagcagctgaaa 234
           ||||||||||||||||||||
Sbjct: 683 tagctgctgagcagctgaaa 664
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>gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence
          Length = 1830

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 ctgcaagcagaccatggcca 154
           ||||||||||||||||||||
Sbjct: 134 ctgcaagcagaccatggcca 115
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>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence
          Length = 175133

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cagctagctagctgctgagc 226
             ||||||||||||||||||||
Sbjct: 9993  cagctagctagctgctgagc 10012
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>gb|AC124607.4| Mus musculus BAC clone RP23-84H10 from chromosome 12, complete sequence
          Length = 168842

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tcaaatgtcaattccttttg 71
              ||||||||||||||||||||
Sbjct: 135926 tcaaatgtcaattccttttg 135945
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>gb|AC146608.2| Mus musculus BAC clone RP23-159D24 from chromosome 12, complete
             sequence
          Length = 173569

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tcaaatgtcaattccttttg 71
             ||||||||||||||||||||
Sbjct: 93804 tcaaatgtcaattccttttg 93785
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>ref|XM_809159.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506635.30) partial mRNA
          Length = 3663

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 68   tttgaagaaacacaacggcc 87
            ||||||||||||||||||||
Sbjct: 1576 tttgaagaaacacaacggcc 1595
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>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    ctgagcagctgaaaatcggc 240
              ||||||||||||||||||||
Sbjct: 118931 ctgagcagctgaaaatcggc 118950
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>gb|AC159480.5| Mus musculus 6 BAC RP24-470K4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 168310

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   ggtaaagcctggggtgcagt 401
             ||||||||||||||||||||
Sbjct: 95879 ggtaaagcctggggtgcagt 95860
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>dbj|AB182653.1| Cypselurus hiraii mitochondrial DNA, complete genome
          Length = 16528

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  tagactgcaagcagaccatg 150
            ||||||||||||||||||||
Sbjct: 2250 tagactgcaagcagaccatg 2269
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>gb|AC154904.4| Mus musculus BAC clone RP23-416C3 from chromosome 12, complete sequence
          Length = 194547

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tcaaatgtcaattccttttg 71
             ||||||||||||||||||||
Sbjct: 42619 tcaaatgtcaattccttttg 42638
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>gb|AF243947.1|AF243947 Cypselurus melanurus isolate N10b 16S large subunit ribosomal RNA
           gene, partial sequence; mitochondrial gene for
           mitochondrial product
          Length = 520

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>gb|AF243946.1|AF243946 Cypselurus melanurus isolate N10a 16S large subunit ribosomal RNA
           gene, partial sequence; mitochondrial gene for
           mitochondrial product
          Length = 520

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tagactgcaagcagaccatg 150
           ||||||||||||||||||||
Sbjct: 179 tagactgcaagcagaccatg 198
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>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ccagctagctagctgctgag 225
             ||||||||||||||||||||
Sbjct: 91972 ccagctagctagctgctgag 91991
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>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete
             sequences
          Length = 170371

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tagctgctgagcagctgaaa 234
             ||||||||||||||||||||
Sbjct: 11399 tagctgctgagcagctgaaa 11380
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>gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosome 3, complete sequence
          Length = 196971

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    cagctagctagctgctgagc 226
              ||||||||||||||||||||
Sbjct: 183900 cagctagctagctgctgagc 183919
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>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete
            sequence
          Length = 199774

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  gaaggccatttgctgccaca 182
            ||||||||||||||||||||
Sbjct: 3772 gaaggccatttgctgccaca 3753


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,390,016
Number of Sequences: 3902068
Number of extensions: 3390016
Number of successful extensions: 63473
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63328
Number of HSP's gapped (non-prelim): 144
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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