Clone Name | rbah61k09 |
---|---|
Clone Library Name | barley_pub |
>RL3_ORYSA (P35684) 60S ribosomal protein L3| Length = 388 Score = 291 bits (746), Expect = 8e-79 Identities = 139/146 (95%), Positives = 142/146 (97%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK GQE+H A TEF Sbjct: 242 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEF 301 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF Sbjct: 302 DRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 361 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DTSSKFGHGRFQTTDEKQRF+GKLK Sbjct: 362 IDTSSKFGHGRFQTTDEKQRFFGKLK 387
>RL3B_ARATH (P22738) 60S ribosomal protein L3| Length = 389 Score = 272 bits (695), Expect = 7e-73 Identities = 125/144 (86%), Positives = 136/144 (94%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY++GKVGQETH A TE+ Sbjct: 242 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEY 301 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKF Sbjct: 302 DRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKF 361 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGK 195 +D +S GHGRFQT+ EK +FYG+ Sbjct: 362 IDAASNGGHGRFQTSQEKAKFYGR 385
>RL3A_ARATH (P17094) 60S ribosomal protein L3| Length = 388 Score = 266 bits (681), Expect = 3e-71 Identities = 123/145 (84%), Positives = 135/145 (93%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE+NKK+Y++GKVG E H A TE+ Sbjct: 242 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEY 301 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKF Sbjct: 302 DRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKF 361 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKL 192 +DT+S FGHGRFQT+ EK RFY ++ Sbjct: 362 IDTASIFGHGRFQTSLEKMRFYNRV 386
>RL3_DROME (O16797) 60S ribosomal protein L3| Length = 415 Score = 220 bits (561), Expect = 2e-57 Identities = 107/153 (69%), Positives = 123/153 (80%), Gaps = 7/153 (4%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHD----- 462 RKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y+IG G T D Sbjct: 241 RKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG-AGIHTKDGKVIK 299 Query: 461 --ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 288 ASTE+D T+K ITPMGGFPHYG V D++MIKGCC+G KKR++TLR+SLLK T R AL Sbjct: 300 NNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSAL 359 Query: 287 EEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 E+IKLKF+DTSSK GHGRFQT +K F G LK Sbjct: 360 EQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392
>RL3_TOXCA (P49149) 60S ribosomal protein L3| Length = 401 Score = 214 bits (544), Expect = 2e-55 Identities = 98/149 (65%), Positives = 121/149 (81%), Gaps = 3/149 (2%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK---VGQETHDAS 456 RKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++GK + + Sbjct: 241 RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGG 300 Query: 455 TEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK 276 T++D TEK + PMGGFPHYG+V D++MI+GCCVG KKR +TLR+SL+ QT R A E+I Sbjct: 301 TDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKIN 360 Query: 275 LKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 LK++DTSSKFGHGRFQT EK+ F GKLK Sbjct: 361 LKWIDTSSKFGHGRFQTHAEKRAFMGKLK 389
>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)| Length = 402 Score = 211 bits (536), Expect = 2e-54 Identities = 103/152 (67%), Positives = 125/152 (82%), Gaps = 6/152 (3%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KVGQET-H 465 RKTHRGLRKVACIGAWHPARV++TVARAGQ GYHHRTE+NKK+YKIG K G+ + Sbjct: 241 RKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 300 Query: 464 DASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 285 +AST++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE Sbjct: 301 NASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALE 360 Query: 284 EIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 +I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 361 KIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 209 bits (532), Expect = 5e-54 Identities = 97/149 (65%), Positives = 123/149 (82%), Gaps = 3/149 (2%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG---QETHDAS 456 RKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK + ++ S Sbjct: 242 RKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGS 301 Query: 455 TEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK 276 TEFD T+K ITPMGGFP YG+V DY+M++G +GPKKR++TLR+SL+ QT R+A E+I Sbjct: 302 TEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKIN 361 Query: 275 LKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 LK++DTSSK GHGRFQTT EK+ F GKLK Sbjct: 362 LKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)| Length = 402 Score = 209 bits (532), Expect = 5e-54 Identities = 102/152 (67%), Positives = 125/152 (82%), Gaps = 6/152 (3%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KVGQET-H 465 RKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG K G+ + Sbjct: 241 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 300 Query: 464 DASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 285 +AST++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE Sbjct: 301 NASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALE 360 Query: 284 EIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 +I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 361 KIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_BOVIN (P39872) 60S ribosomal protein L3| Length = 402 Score = 209 bits (532), Expect = 5e-54 Identities = 102/152 (67%), Positives = 125/152 (82%), Gaps = 6/152 (3%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KVGQET-H 465 RKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG K G+ + Sbjct: 241 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 300 Query: 464 DASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 285 +AST++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE Sbjct: 301 NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE 360 Query: 284 EIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 +I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 361 KIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 392
>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)| (TARBP-B) Length = 402 Score = 209 bits (531), Expect = 7e-54 Identities = 102/152 (67%), Positives = 125/152 (82%), Gaps = 6/152 (3%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KVGQET-H 465 RKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG K G+ + Sbjct: 241 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 300 Query: 464 DASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 285 +AST++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE Sbjct: 301 NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE 360 Query: 284 EIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 +I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 361 KIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_ASHGO (Q759R7) 60S ribosomal protein L3| Length = 388 Score = 208 bits (529), Expect = 1e-53 Identities = 102/146 (69%), Positives = 117/146 (80%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY+IGK G E + A+TEF Sbjct: 241 RKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGN-AATEF 299 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRT+K ITPMGGF HYG V D++M+KG G +KRVVTLR+SL TSR ALEE+ LK+ Sbjct: 300 DRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKW 359 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFG GRFQT EK F G LK Sbjct: 360 IDTASKFGKGRFQTPAEKHAFMGTLK 385
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 206 bits (524), Expect = 5e-53 Identities = 96/149 (64%), Positives = 122/149 (81%), Gaps = 3/149 (2%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG---QETHDAS 456 RKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK + ++ S Sbjct: 242 RKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGS 301 Query: 455 TEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK 276 TEFD T+K I PMGGFP YG+V DY+M++G +GPKKR++TLR+SL+ QT R+A E+I Sbjct: 302 TEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKIN 361 Query: 275 LKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 LK++DTSSK GHGRFQTT EK+ F GKLK Sbjct: 362 LKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like| Length = 406 Score = 205 bits (521), Expect = 1e-52 Identities = 99/153 (64%), Positives = 118/153 (77%), Gaps = 7/153 (4%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHD----- 462 RKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKK+Y+IG+ G D Sbjct: 241 RKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR-GLHMEDGKVVK 299 Query: 461 --ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 288 AST +D T+K ITP+GGFPHYG V D++M+KGC G KKRV+TLR+SLL SR AL Sbjct: 300 NNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAL 359 Query: 287 EEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 E I+LKF+DT+SKFGHGRFQT EK+ F G K Sbjct: 360 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392
>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3| Length = 402 Score = 203 bits (517), Expect = 3e-52 Identities = 101/152 (66%), Positives = 124/152 (81%), Gaps = 6/152 (3%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KVGQET-H 465 RKTHRGLRKVACIGA HPARV+++VARAGQ GYHHRTE+NKK+YKIG K G+ + Sbjct: 241 RKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 300 Query: 464 DASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 285 +AST++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE Sbjct: 301 NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE 360 Query: 284 EIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 +I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 361 KIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_DICDI (P34113) 60S ribosomal protein L3| Length = 397 Score = 201 bits (512), Expect = 1e-51 Identities = 94/150 (62%), Positives = 116/150 (77%), Gaps = 4/150 (2%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV----GQETHDA 459 RKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y+IG+ G++ Sbjct: 242 RKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTG 301 Query: 458 STEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 279 TEFD TEK I PMGGF HYG+VK ++LM+KGC GP+KR +TLR+S+ QT R ALE+I Sbjct: 302 KTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKI 361 Query: 278 KLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 LKF+DTSSKFGHG QT ++K +++G K Sbjct: 362 TLKFIDTSSKFGHGLHQTAEDKTKYFGVKK 391
>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like| Length = 406 Score = 201 bits (512), Expect = 1e-51 Identities = 97/153 (63%), Positives = 117/153 (76%), Gaps = 7/153 (4%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHD----- 462 RKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKK+++IG+ G D Sbjct: 241 RKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR-GPHMEDGKLVK 299 Query: 461 --ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 288 AST +D T K ITP+GGFPHYG V D++M+KGC G KKRV+TLR+SLL SR A+ Sbjct: 300 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 359 Query: 287 EEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 189 E I+LKF+DT+SKFGHGRFQT EK+ F G K Sbjct: 360 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392
>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3| Length = 387 Score = 201 bits (510), Expect = 2e-51 Identities = 96/146 (65%), Positives = 116/146 (79%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GK G + +A+TEF Sbjct: 240 RKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGK-GDDEANAATEF 298 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRT+K ITPMGGF HYG + D++++KG G +KRVVTLR+SL TSR ALEE+ LK+ Sbjct: 299 DRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKW 358 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFG GRFQT EK F G LK Sbjct: 359 IDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of| killer protein 8) (Trichodermin resistance protein) Length = 386 Score = 200 bits (509), Expect = 2e-51 Identities = 94/146 (64%), Positives = 115/146 (78%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GK G + + +T F Sbjct: 239 RKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGK-GDDEANGATSF 297 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRT+K ITPMGGF HYG +K D++M+KGC G +KR+VTLR+SL TSR ALEE+ LK+ Sbjct: 298 DRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKW 357 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFG GRFQT EK F G LK Sbjct: 358 IDTASKFGKGRFQTPAEKHAFMGTLK 383
>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3| Length = 387 Score = 199 bits (505), Expect = 7e-51 Identities = 96/146 (65%), Positives = 115/146 (78%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y+IGK G + +A+T F Sbjct: 240 RKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGK-GDDEGNAATNF 298 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRT+K I PMGGF HYG+V D++M+KG G KKRVVTLR+SL TSR A+EE+ LK+ Sbjct: 299 DRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKW 358 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFG GRFQT EK F G LK Sbjct: 359 IDTASKFGKGRFQTPAEKHAFMGTLK 384
>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)| Length = 392 Score = 197 bits (502), Expect = 2e-50 Identities = 95/146 (65%), Positives = 117/146 (80%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT N KV++IGK G + +AST+F Sbjct: 241 RKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGK-GSDEGNASTDF 299 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 D ++K ITPMGGF YG VK DY+M+KG G KKRV+TLR++L QTSR A E+++LK+ Sbjct: 300 DISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKW 359 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DTSSKFGHG FQT +EK+ F G LK Sbjct: 360 IDTSSKFGHGAFQTPEEKRAFMGTLK 385
>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B| Length = 387 Score = 197 bits (501), Expect = 2e-50 Identities = 95/146 (65%), Positives = 115/146 (78%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N K+Y+IG G + +AST+F Sbjct: 239 RKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDF 297 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 D TEK ITPMGGF YGVV+ D++M+ G GP KRV+TLR+SLL TSR ALE + LK+ Sbjct: 298 DATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKW 357 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFGHGRFQT E ++F G LK Sbjct: 358 IDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A| Length = 387 Score = 197 bits (501), Expect = 2e-50 Identities = 95/146 (65%), Positives = 115/146 (78%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N K+Y+IG G + +AST+F Sbjct: 239 RKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDF 297 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 D TEK ITPMGGF YGVV+ D++M+ G GP KRV+TLR+SLL TSR ALE + LK+ Sbjct: 298 DATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKW 357 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFGHGRFQT E ++F G LK Sbjct: 358 IDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3| Length = 389 Score = 195 bits (496), Expect = 8e-50 Identities = 94/146 (64%), Positives = 112/146 (76%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G G E+ A TEF Sbjct: 240 RKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDESSGA-TEF 298 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 DRT+K I PMGGF YG VK D++++KG G KKR+VT+R+SL TSR A E + LK+ Sbjct: 299 DRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKW 358 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DT+SKFG GRFQT EK F G LK Sbjct: 359 IDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3_NEUCR (P59671) 60S ribosomal protein L3| Length = 392 Score = 191 bits (484), Expect = 2e-48 Identities = 91/146 (62%), Positives = 114/146 (78%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y+IGK G A+TE Sbjct: 241 RKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGK-GDAEDSAATEV 299 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 D T+K ITPMGGF YG + D++M+KG G KKRV+TLR+S+ TSR ALE+++LK+ Sbjct: 300 DVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKW 359 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 +DTSS+FGHG FQT EK++F G LK Sbjct: 360 IDTSSEFGHGAFQTPAEKKQFQGTLK 385
>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3| Length = 383 Score = 187 bits (476), Expect = 2e-47 Identities = 92/146 (63%), Positives = 114/146 (78%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RK+ +G+RKVACIGAWHP+RV Y++ARAGQ G+H RTE NK+VY IG + + TEF Sbjct: 236 RKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGN---GSSNIKTEF 292 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 D TEK I+PMGGFPHYG V+ D++M+KG VG +KRVVTLR+SLL+Q A EE+ +KF Sbjct: 293 DLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKF 349 Query: 266 VDTSSKFGHGRFQTTDEKQRFYGKLK 189 VDTSSK GHGRFQT+ EK+ FYG K Sbjct: 350 VDTSSKIGHGRFQTSAEKKAFYGARK 375
>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)| Length = 130 Score = 116 bits (291), Expect = 5e-26 Identities = 55/92 (59%), Positives = 71/92 (77%), Gaps = 6/92 (6%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KVGQ-ETH 465 RKTHRGLRKVACIGAWHPAR +++VARAGQ GYHHRTE+NKK+YKIG K G+ + Sbjct: 39 RKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 98 Query: 464 DASTEFDRTEKDITPMGGFPHYGVVKADYLMI 369 + T++D ++K I P+G F HYG V D++M+ Sbjct: 99 NXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130
>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P| Length = 365 Score = 113 bits (283), Expect = 4e-25 Identities = 54/125 (43%), Positives = 80/125 (64%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ IG+ G+ D +TE Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLKLDENTEI- 303 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 264 +ITP GGFPHYG+V++D++MI G G KR++ +R ++ + ++ ++ +V Sbjct: 304 ----EITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYV 359 Query: 263 DTSSK 249 SK Sbjct: 360 SVESK 364
>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P| Length = 361 Score = 110 bits (276), Expect = 3e-24 Identities = 53/125 (42%), Positives = 78/125 (62%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ IG+ G+ D Sbjct: 242 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVID 295 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 264 E +ITP GGFPHYG+V++D++MI G G KR++ +R ++ + ++ ++ +V Sbjct: 296 GNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYV 355 Query: 263 DTSSK 249 SK Sbjct: 356 SVESK 360
>RL3_PYRHO (O59418) 50S ribosomal protein L3P| Length = 362 Score = 110 bits (275), Expect = 3e-24 Identities = 53/125 (42%), Positives = 77/125 (61%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ IG+ G+ D Sbjct: 243 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVID 296 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 264 E +ITP GGFPHYG+V+ D++MI G G KR++ +R ++ + ++ ++ +V Sbjct: 297 GNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYV 356 Query: 263 DTSSK 249 SK Sbjct: 357 SVESK 361
>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P| Length = 346 Score = 105 bits (262), Expect = 1e-22 Identities = 50/119 (42%), Positives = 76/119 (63%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDI 426 R + +G WHPARV +TV +AGQ G+HHRTE NK++ IG+ G+ D + E +I Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLDGN------EIEI 286 Query: 425 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 249 TP GGFPHYG+V++D+LMI+G G KR++ +R ++ + +E ++ +V SK Sbjct: 287 TPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P| Length = 337 Score = 94.4 bits (233), Expect = 3e-19 Identities = 49/122 (40%), Positives = 73/122 (59%) Frame = -1 Query: 608 LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKD 429 LR+V +GA++P+RVS+ V + GQ GYH RTE NK++ KIG G+E Sbjct: 232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE-------------- 277 Query: 428 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 249 +TP GGF +YG+V+ DY++IKG GP KR++ LR + + + L E + ++ SK Sbjct: 278 VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESK 335 Query: 248 FG 243 G Sbjct: 336 QG 337
>RL3_METJA (P54014) 50S ribosomal protein L3P| Length = 335 Score = 93.2 bits (230), Expect = 6e-19 Identities = 49/121 (40%), Positives = 69/121 (57%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDI 426 R V IG W P V ++V GQ GYH RTE NK++ KIG G E I Sbjct: 230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------I 275 Query: 425 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKF 246 TP GGF HYGV++ +Y+++KG GP KR++ LR+++ Q + + EI ++ T+SK Sbjct: 276 TPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQ 333 Query: 245 G 243 G Sbjct: 334 G 334
>RL3_METMA (Q8PV50) 50S ribosomal protein L3P| Length = 337 Score = 92.4 bits (228), Expect = 1e-18 Identities = 47/122 (38%), Positives = 73/122 (59%) Frame = -1 Query: 608 LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKD 429 LR++ +G+++P+RVS+ V + GQ GYH RTE NK++ KIG G+E Sbjct: 232 LRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE-------------- 277 Query: 428 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 249 +TP GGF +YG+V+ DY++IKG GP KR++ LR + + + L E + ++ SK Sbjct: 278 VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESK 335 Query: 248 FG 243 G Sbjct: 336 QG 337
>RL3_ARCFU (O28354) 50S ribosomal protein L3P| Length = 331 Score = 91.3 bits (225), Expect = 2e-18 Identities = 45/121 (37%), Positives = 72/121 (59%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDI 426 R+V +G W+P V +TV +AGQ G+H RTE NK++ KIG+ G+E I Sbjct: 226 RRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------I 271 Query: 425 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKF 246 TP GGF HYGV++ Y+++ G GP KR++ +R ++ + + + + + +V T+SK Sbjct: 272 TPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQ 329 Query: 245 G 243 G Sbjct: 330 G 330
>RL3_METTH (O26110) 50S ribosomal protein L3P| Length = 337 Score = 90.1 bits (222), Expect = 5e-18 Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKD- 429 R + +G W P+R +TV +AGQ GYH RTE NK++ KIG D +E D Sbjct: 230 RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADL 276 Query: 428 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 249 + P GGF YG+V+ DY+MIKG GP KR+V LR+++ + + E ++ ++ T+SK Sbjct: 277 VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASK 334 Query: 248 FG 243 G Sbjct: 335 QG 336
>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P| Length = 334 Score = 89.0 bits (219), Expect = 1e-17 Identities = 48/122 (39%), Positives = 66/122 (54%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDI 426 R+ IG W P RV +TV AGQ G+H RTE NK++ K+G G E I Sbjct: 229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------I 274 Query: 425 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKF 246 TP GGF +YG VK Y+++KG GP KR+V LR ++ + L E+ ++ SK Sbjct: 275 TPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQ 332 Query: 245 GH 240 G+ Sbjct: 333 GN 334
>RL3_METKA (Q8TY90) 50S ribosomal protein L3P| Length = 361 Score = 88.2 bits (217), Expect = 2e-17 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Frame = -1 Query: 626 RKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDAST 453 RKT R R + IG P+RV +TV AGQ GYH RTE NK++ KIG+ G+E Sbjct: 227 RKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE------ 280 Query: 452 EFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 315 +TP GGF +YGVV+ DY+MI G GPKKR++ +R ++ Sbjct: 281 --------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P| Length = 338 Score = 80.5 bits (197), Expect = 4e-15 Identities = 45/100 (45%), Positives = 57/100 (57%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G R+ IG PA V +T R GQ G+H RTE NK++ KIG+ G E Sbjct: 229 KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------- 278 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 324 ITP GFPHYGVVK Y++I+G G +KR+V LR Sbjct: 279 -----ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P| Length = 331 Score = 77.4 bits (189), Expect = 3e-14 Identities = 46/128 (35%), Positives = 65/128 (50%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RK + R + +G WHP V TV +AGQ GY RT N +V K K DA T Sbjct: 217 RKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK----GEDADT-- 270 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 I GGF HYG+VK DY+++ G GP KR++ +R ++ ++ +KL + Sbjct: 271 ------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDY 322 Query: 266 VDTSSKFG 243 + SK G Sbjct: 323 ISLESKQG 330
>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P| Length = 334 Score = 77.0 bits (188), Expect = 4e-14 Identities = 44/121 (36%), Positives = 65/121 (53%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDI 426 R++ +G W+P+RV TV + GQ GYH RTE+NK++ I G E Sbjct: 231 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIND-GDEP-------------- 275 Query: 425 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKF 246 TP GGFP+YG V Y ++KG GP++R+V R ++ S E+ ++V T+S Sbjct: 276 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQ 333 Query: 245 G 243 G Sbjct: 334 G 334
>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P| Length = 331 Score = 75.1 bits (183), Expect = 2e-13 Identities = 45/128 (35%), Positives = 64/128 (50%) Frame = -1 Query: 626 RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEF 447 RK + R + +G WHP V TV +AGQ G+ RT N +V K G E Sbjct: 217 RKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGN--------KEEV 268 Query: 446 DRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 267 D I GGF HYG VK DY+++ G G KR++ +R ++ +EE+KL++ Sbjct: 269 D----SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEY 322 Query: 266 VDTSSKFG 243 + SK G Sbjct: 323 ISLESKQG 330
>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)| Length = 337 Score = 73.6 bits (179), Expect = 5e-13 Identities = 37/97 (38%), Positives = 54/97 (55%) Frame = -1 Query: 605 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDI 426 R++ +G W+P+RV TV + GQ GYH RTE+NK++ IG+ + T D Sbjct: 234 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVD------------ 281 Query: 425 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 315 GGF +YG V Y ++KG GP KR+V R ++ Sbjct: 282 ---GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315
>RL3_NANEQ (P60458) 50S ribosomal protein L3P| Length = 321 Score = 68.9 bits (167), Expect = 1e-11 Identities = 39/116 (33%), Positives = 60/116 (51%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K+ +G+RKV IG+ P R+ TV GQ GYH RTE NK + KIG Sbjct: 215 KSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-------------- 260 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK 276 + + GG+ YG V +++KG GP+KR++ LR+++ + +E I+ Sbjct: 261 ---EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVEGIE 313
>RL3_SULTO (Q975I1) 50S ribosomal protein L3P| Length = 343 Score = 62.0 bits (149), Expect = 1e-09 Identities = 45/127 (35%), Positives = 64/127 (50%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G RKV G + SY V + GQ GYH RTE NK++ KI E Sbjct: 235 KHRKGSRKVGARGPSF-STPSY-VPQPGQMGYHRRTEYNKRILKISDDPNE--------- 283 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 264 I P GGF +YG+V+ YL+I+G +G KKR + LR + + S + K+ +V Sbjct: 284 -----INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYV 336 Query: 263 DTSSKFG 243 + S+ G Sbjct: 337 NLYSQQG 343
>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P| Length = 351 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/101 (36%), Positives = 53/101 (52%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G RK+ G SYT + GQ G+H RTE NK++ KIG Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------- 287 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 321 K+I P GGF YG+V+ Y++++G +G KKR + LR+ Sbjct: 288 -EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327
>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P| Length = 344 Score = 58.2 bits (139), Expect = 2e-08 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G R++ H + +AGQ G+H RTE NK++ I G + Sbjct: 231 KHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK--------- 279 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEEIKLK 270 +TP GGF YGVV++ ++M+ G G KR + +R ++ + +L + + ++ Sbjct: 280 -----VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEIT 334 Query: 269 FVDTSSKFG 243 ++ +SK G Sbjct: 335 YISLASKQG 343
>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P| Length = 342 Score = 58.2 bits (139), Expect = 2e-08 Identities = 42/127 (33%), Positives = 64/127 (50%) Frame = -1 Query: 623 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFD 444 K +G RK+ G + SY V + GQ G+H RTE NK++ KIG Sbjct: 234 KHRKGSRKIGARGP-SISTPSY-VPQPGQLGFHRRTEYNKRIIKIGD------------- 278 Query: 443 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 264 +I P GG +YG+VK YL+I+G +G +KR + LR + S + K+ +V Sbjct: 279 -NVNEINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYV 335 Query: 263 DTSSKFG 243 + +S+ G Sbjct: 336 NLASQQG 342
>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 38.1 bits (87), Expect = 0.021 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Frame = +3 Query: 132 VSHVRF---DKMTQLILRSSSSLELAIEPLLL--VRGLETAVPKLGRGVDKLELDFLQCE 296 + H+ F +++T+++LR+S+ L+ I+ L + P++ + K DF Q Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVR 236 Query: 297 TRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 461 G + + LA+ TLL D LD L HTI+ ++ G V L + S G Sbjct: 237 GNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 38.1 bits (87), Expect = 0.021 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Frame = +3 Query: 132 VSHVRF---DKMTQLILRSSSSLELAIEPLLL--VRGLETAVPKLGRGVDKLELDFLQCE 296 + H+ F +++T+++LR+S+ L+ I+ L + P++ + K DF Q Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVR 236 Query: 297 TRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 461 G + + LA+ TLL D LD L HTI+ ++ G V L + S G Sbjct: 237 GNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 37.7 bits (86), Expect = 0.028 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 132 VSHVRF---DKMTQLILRSSSSLELAIEPLLL--VRGLETAVPKLGRGVDKLELDFLQCE 296 + H+ F +++T+++LR+S L+ I+ L + P++ + K DF Q Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVR 236 Query: 297 TRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 461 G + + LA+ TLL D LD L HTI+ ++ G V L + S G Sbjct: 237 GNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Adenylyl cyclase) (Fragment) Length = 572 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = -1 Query: 566 VSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ-----ETHDASTEFDRTEKDITPMGGFPH 402 + Y G + Y + +G GQ ET+ + + +R++ D+TP+GG P Sbjct: 401 IRYDEVTKGYDYYGQTANTAARTESVGNGGQVLMTCETYHSLSTAERSQFDVTPLGGVPL 460 Query: 401 YGV 393 GV Sbjct: 461 RGV 463
>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3| Length = 266 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -1 Query: 392 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 264 VK + L++KG GPKK V +++ K S+ A++ + L+ V Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224
>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 177 SSSSLELAIEPLLLVRGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 326 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 177 SSSSLELAIEPLLLVRGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 326 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>CYSA_PSEPK (Q88CL2) Sulfate/thiosulfate import ATP-binding protein cysA (EC| 3.6.3.25) (Sulfate-transporting ATPase) Length = 329 Score = 30.4 bits (67), Expect = 4.5 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +3 Query: 186 SLELAIEPLLLVRGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTAS 365 ++E+A +++ +G+ + G D+ DF+ + L+EGHH L P S Sbjct: 200 AMEVADRIVVMNKGVIEQIGSPGEVYDQPANDFVYHFLGDSNRLALSEGHHVLFRPHEVS 259 Query: 366 LD-HQVVGLHHTIVRE 410 L H+ G H VR+ Sbjct: 260 LSRHETEGHHAAEVRD 275
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/66 (24%), Positives = 27/66 (40%) Frame = +3 Query: 231 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVRE 410 E+ P ++ E L C RG G+ + WP+ + + G +H + Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729 Query: 411 ATHGSD 428 A HG+D Sbjct: 730 A-HGTD 734
>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 366 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +3 Query: 153 KMTQLILRSSSSLELAIEPLL--LVRGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 326 ++ +++LR+S L + ++P ++ + P+L D+ Q +T+G ++ + Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275 Query: 327 EGHHTLLWPDTASLDHQVVGLHHTIVR 407 E ++ D LD Q T++R Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/85 (21%), Positives = 35/85 (41%) Frame = +1 Query: 265 TNLSLISSSARREVCFSRDWRRVTTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 444 T +++S+++R + DWR R F +QH V Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431 Query: 445 SNSVEASWVSCPTLPILYTFLFISV 519 S+ SW +C TL +++ F+ +++ Sbjct: 1432 DGSIFGSWKACQTLALMHDFVILTL 1456
>LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A chain)| Length = 3084 Score = 29.3 bits (64), Expect = 10.0 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 473 ETHDASTEFDRTEKDITPMGGFPHYGVVK 387 ET A+++ +R EKD+ +GG PH V+ Sbjct: 2426 ETPGAASDLNRLEKDLIYVGGLPHSKAVR 2454
>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 29.3 bits (64), Expect = 10.0 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = +3 Query: 132 VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVRGLETAVPKLGRGVDKLELDFLQCE 296 +SH+ + + +++LRS+ + I E + P++ + K DF Q + Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237 Query: 297 TRGLLQQGLAEGHHTLLWPDTASLDH 374 + G + + +A+ TLL D LD+ Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,135,175 Number of Sequences: 219361 Number of extensions: 1982413 Number of successful extensions: 5470 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 5212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5414 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)