ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chro... 42 0.99
2emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on ch... 42 0.99
3emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, ... 42 0.99
4gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Canc... 42 0.99
5gb|AC153574.4| Mus musculus 6 BAC RP23-265B8 (Roswell Park Cance... 42 0.99
6gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, co... 40 3.9
7gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosom... 40 3.9
8gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, com... 40 3.9
9gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, com... 40 3.9
10emb|AL139417.9| Human DNA sequence from clone RP1-59H12 on chrom... 40 3.9
11gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, comple... 40 3.9
12gb|AC096886.2| Homo sapiens chromosome 3 clone RP11-3F4, complet... 40 3.9
13gb|AC139619.6| Homo sapiens 3 BAC RP11-183G21 (Roswell Park Canc... 40 3.9
14ref|XM_671343.1| Plasmodium berghei strain ANKA Pfsec61 (PB00012... 40 3.9
15gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, com... 40 3.9

>emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chromosome X Contains the
              GSPT2 gene for G1 to S phase transition 2, a pseudogene
              similar to part of p30 (nuclear protein p30), a zinc finger
              protein pseudogene, the 5' end of a variant of the MAGED1
              gene for melanoma antigen, family D, 1 and two CpG islands,
              complete sequence
          Length = 157110

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    acaagtaccattatatatggt 185
              |||||||||||||||||||||
Sbjct: 111142 acaagtaccattatatatggt 111162



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>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a
             novel gene, the Nos2 gene for inducible macrophage nitric
             oxide synthase 2 and the 3' end of the Lgals9 gene for
             soluble galactose binding lectin 9, complete sequence
          Length = 178443

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   tccttcctgttgttatgttga 161
             |||||||||||||||||||||
Sbjct: 34963 tccttcctgttgttatgttga 34943



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>emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, complete sequence
          Length = 141840

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 129    actgacatgttttccttcctgttgt 153
              ||||||||||||| |||||||||||
Sbjct: 116066 actgacatgtttttcttcctgttgt 116042



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>gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 205189

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   gttactgacatgttttccttc 146
             |||||||||||||||||||||
Sbjct: 55105 gttactgacatgttttccttc 55125



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>gb|AC153574.4| Mus musculus 6 BAC RP23-265B8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 176152

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   gttactgacatgttttccttc 146
             |||||||||||||||||||||
Sbjct: 24385 gttactgacatgttttccttc 24365



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>gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, complete sequence
          Length = 230772

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    acatgttttccttcctgttg 152
              ||||||||||||||||||||
Sbjct: 141018 acatgttttccttcctgttg 141037



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>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete
             sequence
          Length = 210568

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   gttactgacatgttttcctt 145
             ||||||||||||||||||||
Sbjct: 74604 gttactgacatgttttcctt 74623



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>gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, complete sequence
          Length = 161555

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tcaaagcaagttactgacat 136
             ||||||||||||||||||||
Sbjct: 69356 tcaaagcaagttactgacat 69375



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>gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, complete sequence
          Length = 164170

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcaaagcaagttactgacat 136
              ||||||||||||||||||||
Sbjct: 106371 tcaaagcaagttactgacat 106390



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>emb|AL139417.9| Human DNA sequence from clone RP1-59H12 on chromosome 1q21.1-21.3
             Contains the SPRR2B gene for small proline-rich protein
             2B, the SPRR2E gene for small proline-rich protein 2E and
             the SPRR2F gene for small proline-rich protein 2F,
             complete sequence
          Length = 51059

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 145   tcctgttgttatgttgagtcacaa 168
             ||||||| ||||||||||||||||
Sbjct: 30875 tcctgtttttatgttgagtcacaa 30852



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>gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, complete sequence
          Length = 148726

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 117  tcaaagcaagttactgacatgttttcct 144
            |||||||||||| || ||||||||||||
Sbjct: 4475 tcaaagcaagttgctcacatgttttcct 4502



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>gb|AC096886.2| Homo sapiens chromosome 3 clone RP11-3F4, complete sequence
          Length = 163114

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    agttactgacatgttttccttcct 148
              ||||||||||||| ||||||||||
Sbjct: 161650 agttactgacatgatttccttcct 161673



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>gb|AC139619.6| Homo sapiens 3 BAC RP11-183G21 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 3974

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 125  agttactgacatgttttccttcct 148
            ||||||||||||| ||||||||||
Sbjct: 3460 agttactgacatgatttccttcct 3437



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>ref|XM_671343.1| Plasmodium berghei strain ANKA Pfsec61 (PB000121.02.0), partial
           mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 74  tcacagataaatctactcta 93
           ||||||||||||||||||||
Sbjct: 799 tcacagataaatctactcta 780



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>gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, complete sequence
          Length = 174900

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 271    cacaacagccgcaccacaaggaga 294
              ||||||||| ||||||||||||||
Sbjct: 138896 cacaacagcagcaccacaaggaga 138919


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,103,855
Number of Sequences: 3902068
Number of extensions: 2103855
Number of successful extensions: 33872
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33853
Number of HSP's gapped (non-prelim): 19
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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