Clone Name | rbah61k01 |
---|---|
Clone Library Name | barley_pub |
>emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chromosome X Contains the GSPT2 gene for G1 to S phase transition 2, a pseudogene similar to part of p30 (nuclear protein p30), a zinc finger protein pseudogene, the 5' end of a variant of the MAGED1 gene for melanoma antigen, family D, 1 and two CpG islands, complete sequence Length = 157110 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 acaagtaccattatatatggt 185 ||||||||||||||||||||| Sbjct: 111142 acaagtaccattatatatggt 111162
>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a novel gene, the Nos2 gene for inducible macrophage nitric oxide synthase 2 and the 3' end of the Lgals9 gene for soluble galactose binding lectin 9, complete sequence Length = 178443 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 tccttcctgttgttatgttga 161 ||||||||||||||||||||| Sbjct: 34963 tccttcctgttgttatgttga 34943
>emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, complete sequence Length = 141840 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 actgacatgttttccttcctgttgt 153 ||||||||||||| ||||||||||| Sbjct: 116066 actgacatgtttttcttcctgttgt 116042
>gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205189 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 gttactgacatgttttccttc 146 ||||||||||||||||||||| Sbjct: 55105 gttactgacatgttttccttc 55125
>gb|AC153574.4| Mus musculus 6 BAC RP23-265B8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 176152 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 gttactgacatgttttccttc 146 ||||||||||||||||||||| Sbjct: 24385 gttactgacatgttttccttc 24365
>gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, complete sequence Length = 230772 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acatgttttccttcctgttg 152 |||||||||||||||||||| Sbjct: 141018 acatgttttccttcctgttg 141037
>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete sequence Length = 210568 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gttactgacatgttttcctt 145 |||||||||||||||||||| Sbjct: 74604 gttactgacatgttttcctt 74623
>gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, complete sequence Length = 161555 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tcaaagcaagttactgacat 136 |||||||||||||||||||| Sbjct: 69356 tcaaagcaagttactgacat 69375
>gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, complete sequence Length = 164170 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tcaaagcaagttactgacat 136 |||||||||||||||||||| Sbjct: 106371 tcaaagcaagttactgacat 106390
>emb|AL139417.9| Human DNA sequence from clone RP1-59H12 on chromosome 1q21.1-21.3 Contains the SPRR2B gene for small proline-rich protein 2B, the SPRR2E gene for small proline-rich protein 2E and the SPRR2F gene for small proline-rich protein 2F, complete sequence Length = 51059 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 tcctgttgttatgttgagtcacaa 168 ||||||| |||||||||||||||| Sbjct: 30875 tcctgtttttatgttgagtcacaa 30852
>gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, complete sequence Length = 148726 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 tcaaagcaagttactgacatgttttcct 144 |||||||||||| || |||||||||||| Sbjct: 4475 tcaaagcaagttgctcacatgttttcct 4502
>gb|AC096886.2| Homo sapiens chromosome 3 clone RP11-3F4, complete sequence Length = 163114 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 agttactgacatgttttccttcct 148 ||||||||||||| |||||||||| Sbjct: 161650 agttactgacatgatttccttcct 161673
>gb|AC139619.6| Homo sapiens 3 BAC RP11-183G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 3974 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agttactgacatgttttccttcct 148 ||||||||||||| |||||||||| Sbjct: 3460 agttactgacatgatttccttcct 3437
>ref|XM_671343.1| Plasmodium berghei strain ANKA Pfsec61 (PB000121.02.0), partial mRNA Length = 1416 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tcacagataaatctactcta 93 |||||||||||||||||||| Sbjct: 799 tcacagataaatctactcta 780
>gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, complete sequence Length = 174900 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 cacaacagccgcaccacaaggaga 294 ||||||||| |||||||||||||| Sbjct: 138896 cacaacagcagcaccacaaggaga 138919 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,103,855 Number of Sequences: 3902068 Number of extensions: 2103855 Number of successful extensions: 33872 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33853 Number of HSP's gapped (non-prelim): 19 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)