ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61j23 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 91.7 bits (226), Expect(2) = 1e-38 Identities = 44/44 (100%), Positives = 44/44 (100%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 384 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 1e-38 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -3 Query: 227 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 114 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 73.2 bits (178), Expect(2) = 2e-27 Identities = 35/44 (79%), Positives = 39/44 (88%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 L YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 394 LGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 2e-27 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -3 Query: 230 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 114 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 72.0 bits (175), Expect(2) = 2e-27 Identities = 33/44 (75%), Positives = 40/44 (90%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 +EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 394 MEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 2e-27 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -3 Query: 227 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 114 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 72.0 bits (175), Expect(2) = 3e-26 Identities = 33/44 (75%), Positives = 40/44 (90%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 +EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 392 MEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 3e-26 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -3 Query: 227 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 120 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 79.3 bits (194), Expect = 2e-15 Identities = 36/44 (81%), Positives = 41/44 (93%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 +EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 381 MEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 77.8 bits (190), Expect = 6e-15 Identities = 36/44 (81%), Positives = 41/44 (93%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 LEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 394 LEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 77.4 bits (189), Expect = 7e-15 Identities = 35/44 (79%), Positives = 42/44 (95%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275 +EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 384 IEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 75.5 bits (184), Expect = 3e-14 Identities = 34/43 (79%), Positives = 41/43 (95%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278 LEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 390 LEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 71.6 bits (174), Expect = 4e-13 Identities = 33/42 (78%), Positives = 40/42 (95%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 281 L+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 394 LQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 70.5 bits (171), Expect = 9e-13 Identities = 31/43 (72%), Positives = 42/43 (97%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278 L+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 396 LQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 70.1 bits (170), Expect = 1e-12 Identities = 32/42 (76%), Positives = 39/42 (92%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 281 LEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 398 LEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/43 (74%), Positives = 38/43 (88%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278 LEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 398 LEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 67.4 bits (163), Expect = 8e-12 Identities = 31/40 (77%), Positives = 37/40 (92%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 287 LEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 393 LEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 65.5 bits (158), Expect = 3e-11 Identities = 30/43 (69%), Positives = 39/43 (90%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278 L Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 398 LLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 41.2 bits (95), Expect = 6e-04 Identities = 19/29 (65%), Positives = 23/29 (79%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAAL 320 ++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 366 IKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 34.3 bits (77), Expect = 0.073 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 406 LEYGHMLVQEQDNVKRVQL 350 LEYG+MLV EQ+NVKRV+L Sbjct: 391 LEYGNMLVMEQENVKRVKL 409
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -3 Query: 287 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 129 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +2 Query: 131 CRRRSLPLGRSSWHFGRCNLP 193 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +2 Query: 245 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 361 RW N+ ++ GT+LH +LV+ QSC + +S L T Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 197 VPEGCTDQNAKNYDPTARSD 138 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -1 Query: 370 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 236 NVK V + D A N M+ GSF I+ HP + A Sbjct: 311 NVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGA 355
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 201 ARAGRLHRPKCQELRPNGKERRR 133 A+ R R K Q LRPNG E+RR Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169
>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 220 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +3 Query: 57 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 218 ++RCG + ++K K AVV C VL G+L GA R+ +C Sbjct: 57 YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113
>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)| (EF-1AO1) Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -1 Query: 370 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 236 NVK + + D A N M+ GSF I+ HP ++A Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -1 Query: 370 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 236 NVK + + D A N M+ GSF I+ HP ++A Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355
>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c| Length = 288 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 83 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 187 ++S+ +S KGS + PL + W FG CN Sbjct: 4 RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38
>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) Length = 378 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 284 LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 168 LLRL+N +S G+GA G+ P GC + N+ Sbjct: 88 LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,510,400 Number of Sequences: 219361 Number of extensions: 1155607 Number of successful extensions: 3007 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3006 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
