ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 92 1e-38
2RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 73 2e-27
3RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 72 2e-27
4RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 72 3e-26
5RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 79 2e-15
6RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 78 6e-15
7RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 77 7e-15
8RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 75 3e-14
9RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 72 4e-13
10RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 70 9e-13
11RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 70 1e-12
12RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 70 2e-12
13RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 67 8e-12
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 65 3e-11
15RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 41 6e-04
16RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 34 0.073
17TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription... 29 3.1
18LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor 28 4.0
19CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzym... 28 5.2
20YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19... 28 6.8
21EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF... 28 6.8
22CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like m... 28 6.8
23PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I... 27 8.9
24EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-... 27 8.9
25EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-... 27 8.9
26YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c 27 8.9
27PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (... 27 8.9

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 91.7 bits (226), Expect(2) = 1e-38
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG
Sbjct: 384 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427



 Score = 86.3 bits (212), Expect(2) = 1e-38
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -3

Query: 227 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 114
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 73.2 bits (178), Expect(2) = 2e-27
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           L YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG
Sbjct: 394 LGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437



 Score = 66.6 bits (161), Expect(2) = 2e-27
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -3

Query: 230 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 114
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 72.0 bits (175), Expect(2) = 2e-27
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           +EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+  G+FYG
Sbjct: 394 MEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437



 Score = 67.8 bits (164), Expect(2) = 2e-27
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 227 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 114
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 72.0 bits (175), Expect(2) = 3e-26
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           +EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+  G+F+G
Sbjct: 392 MEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435



 Score = 63.9 bits (154), Expect(2) = 3e-26
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -3

Query: 227 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 120
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           +EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG
Sbjct: 381 MEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424



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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 77.8 bits (190), Expect = 6e-15
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           LEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG
Sbjct: 394 LEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437



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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 77.4 bits (189), Expect = 7e-15
 Identities = 35/44 (79%), Positives = 42/44 (95%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 275
           +EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG
Sbjct: 384 IEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427



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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 34/43 (79%), Positives = 41/43 (95%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278
           LEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+
Sbjct: 390 LEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432



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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 33/42 (78%), Positives = 40/42 (95%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 281
           L+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F
Sbjct: 394 LQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435



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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 31/43 (72%), Positives = 42/43 (97%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278
           L+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 396 LQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438



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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 32/42 (76%), Positives = 39/42 (92%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 281
           LEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F
Sbjct: 398 LEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439



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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278
           LEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+  GSF+
Sbjct: 398 LEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440



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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 287
           LEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG
Sbjct: 393 LEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432



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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 30/43 (69%), Positives = 39/43 (90%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 278
           L Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 398 LLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440



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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQLADTYMSQAAL 320
           ++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 366 IKYGKSLVDEQENVKRVQLADAYLSGAEL 394



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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -1

Query: 406 LEYGHMLVQEQDNVKRVQL 350
           LEYG+MLV EQ+NVKRV+L
Sbjct: 391 LEYGNMLVMEQENVKRVKL 409



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>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -3

Query: 287 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 129
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80



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>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 131  CRRRSLPLGRSSWHFGRCNLP 193
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134



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>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)|
           (pro-ANP-converting enzyme) (Corin) (Heart-specific
           serine proteinase ATC2) (Transmembrane protease, serine
           10)
          Length = 1042

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 245 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 361
           RW     N+ ++ GT+LH +LV+  QSC +   +S L T
Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786



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>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 197  VPEGCTDQNAKNYDPTARSD 138
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402



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>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 370 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 236
           NVK V + D      A    N   M+ GSF    I+  HP  + A
Sbjct: 311 NVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGA 355



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>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 201 ARAGRLHRPKCQELRPNGKERRR 133
           A+  R  R K Q LRPNG E+RR
Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169



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>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 220

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 57  WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 218
           ++RCG    +  ++K       K  AVV  C    VL   G+L GA  R+     +C
Sbjct: 57  YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113



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>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 370 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 236
           NVK + + D      A    N   M+ GSF    I+  HP  ++A
Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355



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>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 370 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 236
           NVK + + D      A    N   M+ GSF    I+  HP  ++A
Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355



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>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c|
          Length = 288

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 83  KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 187
           ++S+ +S      KGS +    PL  + W FG CN
Sbjct: 4   RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38



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>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox|
           protein PBX4)
          Length = 378

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 284 LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 168
           LLRL+N      +S     G+GA  G+   P GC + N+
Sbjct: 88  LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,510,400
Number of Sequences: 219361
Number of extensions: 1155607
Number of successful extensions: 3007
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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