ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61j23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 722 0.0
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 585 e-164
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 585 e-164
4gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 440 e-120
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 436 e-119
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 428 e-117
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 297 1e-77
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 200 3e-48
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 5e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 5e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 5e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 84 4e-13
25gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 80 6e-12
26gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 80 6e-12
27gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 80 6e-12
28gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 80 6e-12
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
30dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
31gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 74 4e-10
32gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 74 4e-10
33gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
34gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
35emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 68 2e-08
36gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 58 2e-05
37gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 44 0.35
38gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.35
39emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.35
40gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.4
41gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.4
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
43gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.4
44emb|Y10657.1|CLRCAGENE C.littorale rca gene 42 1.4
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
46emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.4
47gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.4
48gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.4
49gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 5.4
50gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 5.4
51gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre... 40 5.4
52gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.4
53ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 5.4
54gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 5.4
55gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 5.4
56gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 5.4
57gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 5.4
58gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 5.4
59gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co... 40 5.4
60ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 5.4
61gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.4
62dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.4
63gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 5.4
64gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 5.4
65gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 5.4
66gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 5.4
67emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 5.4
68gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 40 5.4
69ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 5.4
70ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 5.4
71gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 5.4
72gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 5.4
73gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 5.4 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  722 bits (364), Expect = 0.0
 Identities = 404/411 (98%), Gaps = 5/411 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgggtatactnaatat-atttagagatatattaacaaaacatgcccagcaatcgcttgg 59
            ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 atgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttgg 1642

                                                                        
Query: 60   atgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaagg 118
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 atgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaagg 1582

                                                                        
Query: 119  tgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttgg 177
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 tgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1522

                                                                        
Query: 178  tcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctcctat 236
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 tcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctcctat 1462

                                                                        
Query: 237  gcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtctt 295
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 gcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtctt 1402

                                                                        
Query: 296  catcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctg 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 catcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctg 1342

                                                               
Query: 356  cacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctag 406
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 cacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctag 1291
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  585 bits (295), Expect = e-164
 Identities = 366/387 (94%), Gaps = 7/387 (1%)
 Strand = Plus / Minus

                                                                       
Query: 26  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 79
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 80  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 139
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 140 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 199
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                                                       
Query: 200 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 259
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508

                                                                       
Query: 260 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 319
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448

                                                                       
Query: 320 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388

                                      
Query: 380 ctggacgagcatgtgcccgtactctag 406
           |||||||||||||||||||||||||||
Sbjct: 387 ctggacgagcatgtgcccgtactctag 361
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  585 bits (295), Expect = e-164
 Identities = 366/387 (94%), Gaps = 7/387 (1%)
 Strand = Plus / Minus

                                                                        
Query: 26   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 79
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 80   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 139
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 140  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 199
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 200  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 259
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 260  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 319
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 320  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                       
Query: 380  ctggacgagcatgtgcccgtactctag 406
            |||||||||||||||||||||||||||
Sbjct: 1237 ctggacgagcatgtgcccgtactctag 1211
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  440 bits (222), Expect = e-120
 Identities = 227/229 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 60
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7751 atgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 7692

                                                                        
Query: 61   tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7691 tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 7632

                                                                        
Query: 121  taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7631 taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 7572

                                                             
Query: 181  gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 229
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7571 gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  361 bits (182), Expect = 1e-96
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                        
Query: 225  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 285  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 345  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

              
Query: 405  ag 406
            ||
Sbjct: 7175 ag 7174



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 351  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 403
            ||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactc 3909
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  436 bits (220), Expect = e-119
 Identities = 225/227 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 60
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 atgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 1332

                                                                        
Query: 61   tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 1272

                                                                        
Query: 121  taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 1212

                                                           
Query: 181  gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 227
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  262 bits (132), Expect = 8e-67
 Identities = 132/132 (100%)
 Strand = Plus / Minus

                                                                        
Query: 275  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 335  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                        
Query: 395  cccgtactctag 406
            ||||||||||||
Sbjct: 1047 cccgtactctag 1036
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  428 bits (216), Expect = e-117
 Identities = 335/371 (90%), Gaps = 9/371 (2%)
 Strand = Plus / Minus

                                                                        
Query: 40   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 93
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 94   -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 152
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 153  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 212
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 213  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 272
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 273  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 332
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                                        
Query: 333  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 392
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236

                       
Query: 393  tgcccgtactc 403
            || ||||||||
Sbjct: 1235 tggccgtactc 1225
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  297 bits (150), Expect = 1e-77
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 312
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 313 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                             
Query: 373 cctgctcctggacgagcatgtgcccgtactctag 406
           ||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctag 155
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  200 bits (101), Expect = 3e-48
 Identities = 122/129 (94%)
 Strand = Plus / Minus

                                                                        
Query: 275  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 334
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 335  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 394
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                     
Query: 395  cccgtactc 403
             ||||||||
Sbjct: 1243 gccgtactc 1235



 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 99   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 158
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 159  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 218
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 219  tcctttacc 227
            |||||||||
Sbjct: 1369 tcctttacc 1361
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 168  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 225  acctcctcct 234
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1190 atccgtactc 1181
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 168  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 225  acctcctcct 234
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1228 atccgtactc 1219
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 168  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 225  acctcctcct 234
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1227 atccgtactc 1218
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 168  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 225  acctcctcct 234
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1011 atccgtactc 1002
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 168  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 225  acctcctcct 234
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1232 atccgtactc 1223
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 108    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 168    ggcattttggtcggtgcaaccttccggcacgggca 202
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                          
Query: 271    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 330
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 331    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 390
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                           
Query: 391    tgtgcccgtactc 403
              |||  ||||||||
Sbjct: 108426 tgtatccgtactc 108438



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 126    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 186    accttccggcacggg 200
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 108   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 168   ggcattttggtcggtgcaaccttccggcacgggca 202
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                         
Query: 271   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 330
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 331   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 390
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                          
Query: 391   tgtgcccgtactc 403
             |||  ||||||||
Sbjct: 30303 tgtatccgtactc 30315



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 126   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 186   accttccggcacggg 200
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 168  ggcattttggtcggtgcaaccttccggcacgggca 202
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1196 atccgtactc 1187
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 168  ggcattttggtcggtgcaaccttccggcacgggca 202
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 276  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 335
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 336  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 395
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                    
Query: 396  ccgtactc 403
            ||||||||
Sbjct: 1189 ccgtactc 1182
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 108      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 168      ggcattttggtcggtgcaaccttccggcacgggca 202
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                            
Query: 271      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 330
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 331      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 390
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                             
Query: 391      tgtgcccgtactc 403
                |||  ||||||||
Sbjct: 28303565 tgtatccgtactc 28303577



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 126      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 186      accttccggcacggg 200
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 108      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 168      ggcattttggtcggtgcaaccttccggcacgggca 202
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                            
Query: 271      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 330
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 331      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 390
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                             
Query: 391      tgtgcccgtactc 403
                |||  ||||||||
Sbjct: 28286014 tgtatccgtactc 28286026



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 126      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 186      accttccggcacggg 200
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 168  ggcattttggtcggtgcaaccttccggcacgggca 202
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 276  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 335
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 336  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 395
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                    
Query: 396  ccgtactc 403
            ||||||||
Sbjct: 1224 ccgtactc 1217
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 114 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 173
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 174 ttggtcggtgcaaccttccggcacgggca 202
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 7e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 168  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 225  acctcctcct 234
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 334  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                      
Query: 394  gcccgtactc 403
              ||||||||
Sbjct: 1239 atccgtactc 1230
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
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>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 108/130 (83%)
 Strand = Plus / Minus

                                                                       
Query: 274 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 333
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 334 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 393
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                     
Query: 394 gcccgtactc 403
             ||||||||
Sbjct: 445 atccgtactc 436
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>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 103/124 (83%)
 Strand = Plus / Minus

                                                                       
Query: 280 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 339
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 340 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 399
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

               
Query: 400 actc 403
           ||||
Sbjct: 799 actc 796
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 103/124 (83%)
 Strand = Plus / Minus

                                                                        
Query: 280  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 339
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 340  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 399
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                
Query: 400  actc 403
            ||||
Sbjct: 1194 actc 1191
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 109/132 (82%)
 Strand = Plus / Minus

                                                                        
Query: 272  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 331
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 332  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 391
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                        
Query: 392  gtgcccgtactc 403
            ||  ||||||||
Sbjct: 887  gttgccgtactc 876



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 178  tcggtgcaaccttc 191
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 103/124 (83%)
 Strand = Plus / Minus

                                                                        
Query: 280  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 339
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 340  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 399
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                
Query: 400  actc 403
            ||||
Sbjct: 1194 actc 1191
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 108     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 168     ggcattttggtcggtgcaaccttccggcacgggca 202
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 108   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 168   ggcattttggtcggtgcaaccttccggcacgggca 202
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                        
Query: 279  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 338
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 339  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 398
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                 
Query: 399  tactc 403
            |||||
Sbjct: 1074 tactc 1070



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 178  tcggtgcaaccttc 191
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 351  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 403
            ||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactc 1340
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 178  tcggtgcaaccttc 191
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 178  tcggtgcaaccttc 191
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
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>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 297 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 356
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                             
Query: 357 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctag 406
           || | ||| |||||||||||||||||||| |||||||  || ||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctag 9
to top
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 351  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 403
            |||||||| ||||| || || |||||||||||||| |||||||| ||||||||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactc 1190
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>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 300  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 349
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
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>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 313   catcacccagagctgcctggct 334
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 13    aatatatttagagatatattaa 34
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tatatttagagatatattaac 35
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
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>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    tatatttagagatatattaac 35
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 84      aaacatcagatattaaaagtg 104
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   atgcagcaagagatggtgggt 255
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
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>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 351  agctgcacacgcttgacattgtcctgctc 379
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 84      aaacatcagatattaaaagtg 104
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     aaacatcagatattaaaagtg 104
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tatatttagagatatattaac 35
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   cctttacctcctcctatgca 239
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  cctttacctcctcctatgca 239
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 368
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 369  ttgtcctgctcctggacgagcatg 392
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   cctttacctcctcctatgca 239
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 gtcagcaagctgcacacgct 363
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tcagatattaaaagtggcat 108
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tcagatattaaaagtggcat 108
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tcagatattaaaagtggcat 108
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    aatatatttagagatatatt 32
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    ttgacattgtcctgctcctg 382
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419
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>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 117  ggtgtaaaggcagctgccgtcgtcgctc 144
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    aaacatgcccagcaatcgcttgga 60
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   cctttacctcctcctatgca 239
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
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>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
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>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   tggcatgcttaaaaggtgta 122
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    ttgacattgtcctgctcctg 382
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979
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>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 313  catcacccagagctgcctggctca 336
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 209 cttgctgtgctcctttacctcctc 232
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   cctttacctcctcctatgca 239
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aatatatttagagatatatt 32
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 88     atcagatattaaaagtggcatgct 111
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,207,274
Number of Sequences: 3902068
Number of extensions: 3207274
Number of successful extensions: 64270
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64007
Number of HSP's gapped (non-prelim): 216
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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