ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61j21 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 134 bits (338), Expect(2) = 5e-51 Identities = 66/66 (100%), Positives = 66/66 (100%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK Sbjct: 362 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 421 Query: 390 TGSFYG 373 TGSFYG Sbjct: 422 TGSFYG 427 Score = 86.3 bits (212), Expect(2) = 5e-51 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -3 Query: 325 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 212 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 107 bits (266), Expect(2) = 7e-37 Identities = 50/66 (75%), Positives = 60/66 (90%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K Sbjct: 372 KLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIK 431 Query: 390 TGSFYG 373 G+FYG Sbjct: 432 RGTFYG 437 Score = 66.6 bits (161), Expect(2) = 7e-37 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -3 Query: 328 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 212 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 105 bits (263), Expect(2) = 7e-37 Identities = 50/66 (75%), Positives = 59/66 (89%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 RLVNSR+GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ Sbjct: 372 RLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIG 431 Query: 390 TGSFYG 373 G+FYG Sbjct: 432 RGTFYG 437 Score = 67.8 bits (164), Expect(2) = 7e-37 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -3 Query: 325 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 212 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 104 bits (260), Expect(2) = 2e-35 Identities = 48/66 (72%), Positives = 60/66 (90%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS+DGP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ Sbjct: 370 KLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAID 429 Query: 390 TGSFYG 373 G+F+G Sbjct: 430 RGTFFG 435 Score = 63.9 bits (154), Expect(2) = 2e-35 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -3 Query: 325 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 218 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 117 bits (292), Expect = 3e-26 Identities = 54/66 (81%), Positives = 62/66 (93%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 RLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMK Sbjct: 359 RLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMK 418 Query: 390 TGSFYG 373 TG+FYG Sbjct: 419 TGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 114 bits (285), Expect = 2e-25 Identities = 53/66 (80%), Positives = 62/66 (93%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM Sbjct: 372 KLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMN 431 Query: 390 TGSFYG 373 TG+FYG Sbjct: 432 TGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 114 bits (284), Expect = 3e-25 Identities = 53/66 (80%), Positives = 62/66 (93%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 RLVNSR+GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMK Sbjct: 362 RLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMK 421 Query: 390 TGSFYG 373 TGSFYG Sbjct: 422 TGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 110 bits (275), Expect = 3e-24 Identities = 50/65 (76%), Positives = 62/65 (95%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMK Sbjct: 368 KLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMK 427 Query: 390 TGSFY 376 TGSF+ Sbjct: 428 TGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 107 bits (266), Expect = 3e-23 Identities = 49/64 (76%), Positives = 61/64 (95%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K Sbjct: 372 KLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIK 431 Query: 390 TGSF 379 G+F Sbjct: 432 RGTF 435
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 105 bits (262), Expect = 9e-23 Identities = 50/64 (78%), Positives = 59/64 (92%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ Sbjct: 376 KLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAIN 435 Query: 390 TGSF 379 TG+F Sbjct: 436 TGNF 439
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 104 bits (260), Expect = 2e-22 Identities = 49/62 (79%), Positives = 58/62 (93%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ Sbjct: 371 KLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAIN 430 Query: 390 TG 385 TG Sbjct: 431 TG 432
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 104 bits (260), Expect = 2e-22 Identities = 49/65 (75%), Positives = 58/65 (89%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ Sbjct: 376 KLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAIN 435 Query: 390 TGSFY 376 GSF+ Sbjct: 436 NGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 102 bits (254), Expect = 8e-22 Identities = 45/65 (69%), Positives = 63/65 (96%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K Sbjct: 374 KLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIK 433 Query: 390 TGSFY 376 +GSF+ Sbjct: 434 SGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 99.0 bits (245), Expect = 8e-21 Identities = 45/65 (69%), Positives = 60/65 (92%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 391 +LVNS++GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K Sbjct: 376 KLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIK 435 Query: 390 TGSFY 376 +GSF+ Sbjct: 436 SGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 66.6 bits (161), Expect = 5e-11 Identities = 30/40 (75%), Positives = 37/40 (92%) Frame = -1 Query: 567 LVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 448 LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 370 LVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/51 (50%), Positives = 34/51 (66%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 418 +LVN+R V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 345 QLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = -1 Query: 570 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 436 R+VNS +GP F++P T+ L+E + +V EQ ++ QL D Y Sbjct: 245 RVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = -1 Query: 543 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 388 VTF +T E K +E H +QE NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 387 GSFYG*KILHTHPPSLAA 334 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 30.8 bits (68), Expect = 2.8 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -1 Query: 555 RDGPVTFEQPKMTVEK 508 R+GP TFEQP MT+EK Sbjct: 17 REGPPTFEQPAMTIEK 32
>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)| Length = 464 Score = 30.0 bits (66), Expect = 4.8 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -1 Query: 543 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 388 VTF +T E K +E H +QE NVK + + D A N A +T Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337 Query: 387 GSFYG*KILHTHPPSLAA 334 F I+ HP ++A Sbjct: 338 KMFTAQVIIMNHPGQISA 355
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 440 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 544 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 29.6 bits (65), Expect = 6.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 97 WQRPIHLLIICHSQYSFLQW 38 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 29.6 bits (65), Expect = 6.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 97 WQRPIHLLIICHSQYSFLQW 38 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 29.3 bits (64), Expect = 8.2 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Frame = -1 Query: 543 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 388 VTF +T E K +E H + E NVK V + D A N M+ Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337 Query: 387 GSFYG*KILHTHPPSLAA 334 GSF I+ HP + A Sbjct: 338 GSFTAQVIILNHPGQIGA 355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,963,153 Number of Sequences: 219361 Number of extensions: 1603959 Number of successful extensions: 4249 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4248 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
