ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61j21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 874 bits (441), Expect = 0.0 Identities = 479/485 (98%), Gaps = 5/485 (1%) Strand = Plus / Minus Query: 91 tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 149 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650 Query: 150 tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 208 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590 Query: 209 ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 267 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530 Query: 268 cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 326 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470 Query: 327 cctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaa 385 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1469 cctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaa 1410 Query: 386 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1409 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 1350 Query: 446 gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 1290 Query: 506 agcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacc 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1289 agcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacc 1230 Query: 566 agcct 570 ||||| Sbjct: 1229 agcct 1225
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 704 bits (355), Expect = 0.0 Identities = 475/512 (92%), Gaps = 11/512 (2%) Strand = Plus / Minus Query: 63 tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 122 |||| |||||||||||| |||| |||||| |||||| |||||||||||||| |||| Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746 Query: 123 gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 177 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688 Query: 178 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 236 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629 Query: 237 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 296 || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569 Query: 297 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 356 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509 Query: 357 tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcac 416 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449 Query: 417 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 389 Query: 477 cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 536 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 388 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 329 Query: 537 aggtcacgggcccgtcccgcgagttcaccagc 568 ||||||| || ||||||||||||||||||||| Sbjct: 328 aggtcactggtccgtcccgcgagttcaccagc 297
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 680 bits (343), Expect = 0.0 Identities = 426/451 (94%), Gaps = 7/451 (1%) Strand = Plus / Minus Query: 124 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 177 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 178 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 237 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 238 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 297 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 298 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 357 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 358 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 417 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 418 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 478 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 538 ggtcacgggcccgtcccgcgagttcaccagc 568 |||||| || ||||||||||||||||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagc 1147
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 609 bits (307), Expect = e-171 Identities = 324/327 (99%), Gaps = 2/327 (0%) Strand = Plus / Minus Query: 1 ttcttgttnctgtttgcaacaaagncagaaggagtctccactgaaggaatgaatactgag 60 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 7847 ttcttgtt-ctgtttgcaacaaag-cagaaggagtctccactgaaggaatgaatactgag 7790 Query: 61 agtgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatattta 120 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 7789 agtgacaaatgataagtaggtgtattggtctttgccaaatgggtatacacaatatattta 7730 Query: 121 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7729 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggt 7670 Query: 181 aaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7669 aaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 7610 Query: 241 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7609 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 7550 Query: 301 aagtaccttgctgtgctcctttacctc 327 ||||||||||||||||||||||||||| Sbjct: 7549 aagtaccttgctgtgctcctttacctc 7523 Score = 492 bits (248), Expect = e-136 Identities = 248/248 (100%) Strand = Plus / Minus Query: 323 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 383 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 443 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 503 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 563 accagcct 570 |||||||| Sbjct: 7115 accagcct 7108 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 449 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 508 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 509 ttctcgactgtcatctttggctgctcgaa 537 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 509 bits (257), Expect = e-141 Identities = 397/440 (90%), Gaps = 9/440 (2%) Strand = Plus / Minus Query: 138 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 191 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 192 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 250 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 251 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 310 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 311 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 370 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 371 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 430 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 431 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 490 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 491 tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 550 || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 551 tcccgcgagttcaccagcct 570 |||||||||||||||||||| Sbjct: 1175 tcccgcgagttcaccagcct 1156
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 448 bits (226), Expect = e-123 Identities = 229/230 (99%) Strand = Plus / Minus Query: 96 caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 155 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335 Query: 156 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275 Query: 216 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215 Query: 276 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 325 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165 Score = 392 bits (198), Expect = e-106 Identities = 198/198 (100%) Strand = Plus / Minus Query: 373 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 433 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 493 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 553 ccgcgagttcaccagcct 570 |||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcct 970
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 392 bits (198), Expect = e-106 Identities = 210/214 (98%) Strand = Plus / Minus Query: 351 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 410 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 411 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 471 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 531 gctcgaaggtcacgggcccgtcccgcgagttcac 564 |||| |||||||| || ||||||||||||||||| Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcac 95
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 281 bits (142), Expect = 1e-72 Identities = 184/198 (92%) Strand = Plus / Minus Query: 373 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 432 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 433 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 492 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 493 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 552 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 553 ccgcgagttcaccagcct 570 |||||||||||||||||| Sbjct: 1183 ccgcgagttcaccagcct 1166 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 197 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 256 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 257 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 316 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 317 tcctttacc 325 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 266 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 322 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 323 acctcctcct 332 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1145
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 266 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 322 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 323 acctcctcct 332 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1183
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 266 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 322 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 323 acctcctcct 332 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1182
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 266 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 322 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 323 acctcctcct 332 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 966
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 266 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 322 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 323 acctcctcct 332 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1187
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 369 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 428 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 429 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 488 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 489 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 ||| |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 108474 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 224 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 283 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 284 accttccggcacggg 298 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 369 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 428 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 429 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 488 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 489 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 ||| |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 30351 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 224 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 283 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 284 accttccggcacggg 298 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaa 1151
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 135/164 (82%) Strand = Plus / Minus Query: 374 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 433 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 434 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 493 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 494 ccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1146
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 369 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 428 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 429 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 488 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 489 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 ||| |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 28303613 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 224 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 283 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 284 accttccggcacggg 298 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 369 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 428 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 429 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 488 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 489 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 ||| |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 28286062 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 224 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 283 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 284 accttccggcacggg 298 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 95.6 bits (48), Expect = 2e-16 Identities = 135/164 (82%) Strand = Plus / Minus Query: 374 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 433 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 434 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 493 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 494 ccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1181
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 212 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 271 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 272 ttggtcggtgcaaccttccggcacgggca 300 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 266 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 322 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 323 acctcctcct 332 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1194
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 113 bits (57), Expect = 6e-22 Identities = 165/201 (82%) Strand = Plus / Minus Query: 370 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 429 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 430 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 489 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 490 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 549 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 550 gtcccgcgagttcaccagcct 570 ||| |||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcct 807 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 216 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 275 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 276 tcggtgcaaccttc 289 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 107 bits (54), Expect = 4e-20 Identities = 159/194 (81%) Strand = Plus / Minus Query: 377 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 436 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 437 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 496 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 497 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 556 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 557 gagttcaccagcct 570 |||||||||||||| Sbjct: 1014 gagttcaccagcct 1001 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 216 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 275 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 276 tcggtgcaaccttc 289 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Minus Query: 372 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 431 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 432 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 491 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 492 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 537 |||||||| | ||||| |||| |||||||| ||||||||||| Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaa 400
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 97.6 bits (49), Expect = 4e-17 Identities = 163/201 (81%) Strand = Plus / Minus Query: 370 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 429 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 430 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 489 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 490 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 549 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 550 gtcccgcgagttcaccagcct 570 ||| |||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcct 1108 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 216 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 275 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 276 tcggtgcaaccttc 289 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 378 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 437 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 438 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 497 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 498 actctagcagcttctcgactgtcatctttggctgctcgaa 537 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 378 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 437 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 438 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 497 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 498 actctagcagcttctcgactgtcatctttggctgctcgaa 537 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 378 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 437 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 438 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 497 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 498 actctagcagcttctcgactgtcatctttggctgctcgaa 537 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 91.7 bits (46), Expect = 2e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 377 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 436 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 437 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 496 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 497 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 556 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 557 gagttcaccagcct 570 |||||||||||||| Sbjct: 984 gagttcaccagcct 971 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 216 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 275 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 276 tcggtgcaaccttc 289 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 449 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 508 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 509 ttctcgactgtcatctttggctgctcgaa 537 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 395 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 454 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 455 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 510 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 206 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 265 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 266 ggcattttggtcggtgcaaccttccggcacgggca 300 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 449 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 508 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 509 ttctcgactgtcatctttggctgctcgaa 537 ||||||| |||||||| ||||| ||||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaa 1154
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 406 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 465 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 466 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 525 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 526 tggctgctcgaa 537 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Minus Query: 398 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 447 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 411 catcacccagagctgcctggct 432 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 aatatatttagagatatattaa 132 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence Length = 178257 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 aatgataagtaggtgtattgg 88 ||||||||||||||||||||| Sbjct: 109370 aatgataagtaggtgtattgg 109390
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tatatttagagatatattaac 133 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatatttagagatatattaac 133 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence Length = 217738 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 aatgataagtaggtgtattgg 88 ||||||||||||||||||||| Sbjct: 149522 aatgataagtaggtgtattgg 149502
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence Length = 168084 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 aatgataagtaggtgtattgg 88 ||||||||||||||||||||| Sbjct: 131097 aatgataagtaggtgtattgg 131077
>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530024M06 product:Hypothetical protein FLJ33092 (UST1r) homolog [Homo sapiens], full insert sequence Length = 2605 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 aatgataagtaggtgtattgg 88 ||||||||||||||||||||| Sbjct: 2351 aatgataagtaggtgtattgg 2331
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 aaacatcagatattaaaagtg 202 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 atgcagcaagagatggtgggt 353 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 449 agctgcacacgcttgacattgtcctgctc 477 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 aaacatcagatattaaaagtg 202 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 aaacatcagatattaaaagtg 202 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatatttagagatatattaac 133 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cctttacctcctcctatgca 337 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cctttacctcctcctatgca 337 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 7.7 Identities = 68/84 (80%) Strand = Plus / Minus Query: 407 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 466 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 467 ttgtcctgctcctggacgagcatg 490 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cctttacctcctcctatgca 337 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 gtcagcaagctgcacacgct 461 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tcagatattaaaagtggcat 206 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tcagatattaaaagtggcat 206 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tcagatattaaaagtggcat 206 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aatatatttagagatatatt 130 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 ttgacattgtcctgctcctg 480 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 ggtgtaaaggcagctgccgtcgtcgctc 242 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 aaacatgcccagcaatcgcttgga 158 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cctttacctcctcctatgca 337 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tggcatgcttaaaaggtgta 220 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 ttgacattgtcctgctcctg 480 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 catcacccagagctgcctggctca 434 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 cttgctgtgctcctttacctcctc 330 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cctttacctcctcctatgca 337 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aatatatttagagatatatt 130 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in linkage group 11, complete sequence Length = 154382 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 tgaatactgagagtgacaaatgat 73 ||||||||||||||| |||||||| Sbjct: 41193 tgaatactgagagtgtcaaatgat 41216
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 atcagatattaaaagtggcatgct 209 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,445,916 Number of Sequences: 3902068 Number of extensions: 4445916 Number of successful extensions: 86211 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 85881 Number of HSP's gapped (non-prelim): 279 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
