Clone Name | rbah61j20 |
---|---|
Clone Library Name | barley_pub |
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 221 acttggccggtgacgaaggacgccgccggcatgca 255 ||||||||||||| | ||||||||||||||||||| Sbjct: 33635 acttggccggtgatgtaggacgccgccggcatgca 33601
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 221 acttggccggtgacgaaggacgccgccggcatgca 255 ||||||||||||| | ||||||||||||||||||| Sbjct: 13796076 acttggccggtgatgtaggacgccgccggcatgca 13796042 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 25300788 tggccggtgatgtaggaggccgccggcatgca 25300819 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 25189340 tggccggtgatgtaggaggccgccggcatgca 25189371
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 221 acttggccggtgacgaaggacgccgccggcatgca 255 ||||||||||||| | ||||||||||||||||||| Sbjct: 13878078 acttggccggtgatgtaggacgccgccggcatgca 13878044 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 25619458 tggccggtgatgtaggaggccgccggcatgca 25619489 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 25507998 tggccggtgatgtaggaggccgccggcatgca 25508029
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 ccacctcggctggctcgccagc 297 |||||||||||||||||||||| Sbjct: 2870 ccacctcggctggctcgccagc 2891
>gb|AC118739.17| Mus musculus chromosome 1, clone RP24-173M4, complete sequence Length = 159534 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 gttgattcctccttttgccata 466 |||||||||||||||||||||| Sbjct: 70105 gttgattcctccttttgccata 70126
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 ccacctcggctggctcgccagc 297 |||||||||||||||||||||| Sbjct: 5972387 ccacctcggctggctcgccagc 5972408
>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence Length = 189323 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 102096 cagccgccacctcggctggct 102116
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 203 ccaccatcgacggtgatgacttggccggtgacgaaggacgccgccggca 251 ||||||| |||| |||| || ||||||||||| |||| |||| |||||| Sbjct: 1010026 ccaccattgacgctgatcacctggccggtgacaaaggccgcctccggca 1009978
>gb|BC099530.1| Mus musculus dehydrogenase/reductase (SDR family) member 10, mRNA (cDNA clone IMAGE:30728813), partial cds Length = 1048 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 399 cagccgccacctcggctggct 379
>gb|BC064042.1| Mus musculus dehydrogenase/reductase (SDR family) member 10, mRNA (cDNA clone MGC:73543 IMAGE:1332242), complete cds Length = 1173 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 513 cagccgccacctcggctggct 493
>dbj|AK010556.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410019C04 product:weakly similar to SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SHORT-CHAIN DEHYDROGENASE/REDUCTASE RETSDR3) [Bos taurus], full insert sequence Length = 1027 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 395 cagccgccacctcggctggct 375
>dbj|AK002831.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610039E24 product:similar to SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SHORT-CHAIN DEHYDROGENASE/REDUCTASE RETSDR3) [Bos taurus], full insert sequence Length = 1315 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 683 cagccgccacctcggctggct 663
>gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (CIT-B-325L16), complete sequence Length = 180316 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gctgttacatactatgctttt 85 ||||||||||||||||||||| Sbjct: 147868 gctgttacatactatgctttt 147888
>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence Length = 249504 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 23778 cagccgccacctcggctggct 23798
>ref|NM_025330.2| Mus musculus dehydrogenase/reductase (SDR family) member 10 (Dhrs10), mRNA Length = 1173 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cagccgccacctcggctggct 290 ||||||||||||||||||||| Sbjct: 513 cagccgccacctcggctggct 493
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01, complete sequence Length = 149215 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 64610 tggccggtgatgtaggaggccgccggcatgca 64641
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 371 atcgcgcccggggccacactgttcacgcggat 402 |||| ||| |||||||| |||||||||||||| Sbjct: 2962467 atcgggccgggggccacgctgttcacgcggat 2962436
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 27801 tggccggtgatgtaggaggccgccggcatgca 27832
>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0051D10, complete sequence Length = 140272 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 224 tggccggtgacgaaggacgccgccggcatgca 255 |||||||||| | |||| |||||||||||||| Sbjct: 44954 tggccggtgatgtaggaggccgccggcatgca 44923
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 acttggccggtgacgaaggacgcc 244 |||||||||||||||| ||||||| Sbjct: 212396 acttggccggtgacgatggacgcc 212419
>gb|AC147881.2| Xenopus tropicalis clone CH216-115N11, complete sequence Length = 162394 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cactagtaaggtgctcttaa 179 |||||||||||||||||||| Sbjct: 105547 cactagtaaggtgctcttaa 105566
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 ggccggtgacgaaggacgccgccg 248 |||||||||||||||||| ||||| Sbjct: 2174871 ggccggtgacgaaggacggcgccg 2174894
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aagttctctatgatctccgg 342 |||||||||||||||||||| Sbjct: 1213660 aagttctctatgatctccgg 1213679 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,901,441 Number of Sequences: 3902068 Number of extensions: 3901441 Number of successful extensions: 57882 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57631 Number of HSP's gapped (non-prelim): 251 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)