ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLA2R_RABIT (P49260) 180 kDa secretory phospholipase A2 receptor... 34 0.33
2RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro... 33 0.74
3RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote... 33 0.74
4RIG_DROME (Q86BY9) Protein rigor mortis 32 1.3
5AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al... 32 1.7
6HLES_DROME (Q02308) Protein hairless 31 2.2
7LGT_RHOPA (P60973) Prolipoprotein diacylglyceryl transferase (EC... 30 6.3
8RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro... 29 8.2
9LGT_BRAJA (Q89DJ5) Prolipoprotein diacylglyceryl transferase (EC... 29 8.2

>PLA2R_RABIT (P49260) 180 kDa secretory phospholipase A2 receptor precursor|
            (PLA2-R)
          Length = 1458

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 448  KW--GNPPPLENGSTSNLSTPPNGASSSDQPER**REV*SVRPFYHFDSSWWYESLTKMG 275
            KW  GNP    N S S++   P+  +++DQ       + S  P +HF   W++E   K G
Sbjct: 1030 KWLNGNPVAYSNWSPSDIINIPSYNTTADQKPIPLCALLSSNPNFHFTGKWYFEDCGKEG 1089

Query: 274  F 272
            +
Sbjct: 1090 Y 1090



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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 442  GNPPPLENGSTSNLSTPPNGASSSDQP 362
            G PPP+   S    STPP G SSS QP
Sbjct: 1034 GGPPPITPPSCPPTSTPPAGPSSSSQP 1060



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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 442  GNPPPLENGSTSNLSTPPNGASSSDQP 362
            G PPP+   S    STPP G SSS QP
Sbjct: 1034 GGPPPITPPSCPPTSTPPAGPSSSSQP 1060



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>RIG_DROME (Q86BY9) Protein rigor mortis|
          Length = 1235

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 538 VAAHPSEANQFALGLTDGSVYVMEPLESERKW 443
           +A  P ++N+FA+   D SVYVME   +ER W
Sbjct: 747 IAWCPLDSNKFAVSGNDRSVYVMEFQPTERNW 778



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>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -3

Query: 538 VAAHPSEANQFALGLTDGSVYVMEPLESERKWGNPPPLENGSTSNLSTPPNGASSS 371
           + +  S  + F LG+ +G   V++P   + +W   PP  + ++ +L  P   AS +
Sbjct: 30  LGSRASPVSGFQLGVVEGEWRVVQPAYGQARWTTSPPPASPTSGSLRRPTLSASKA 85



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>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = -3

Query: 550  HPVVVAAHPSEANQFALGLTDGSVYVMEPLESERKWGNPPPLENGSTSNLSTPPNGASSS 371
            HP  +  H S A+     LTD S   M    S R     P   + S S+ S   +GASSS
Sbjct: 996  HPAALTTHHSPAHLATPKLTDSSTDQMSATSSHRTASTSPSSSSASASS-SAATSGASSS 1054



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>LGT_RHOPA (P60973) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 286

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 547 PVVVAAHPSEANQFAL----GLTDGSVYVMEPLESERKWGNPPPL 425
           PV VA  P     +AL    G+  G +Y    L+ +R WG P P+
Sbjct: 13  PVAVAIGPFAIRWYALAYIAGIVIGWLYARMLLQRQRLWGGPSPI 57



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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 442  GNPPPLENGSTSNLSTPPNGASSSDQP 362
            G PPP+   +  + STPP G  +S QP
Sbjct: 1042 GGPPPITPPTCPSTSTPPAGPGTSAQP 1068



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>LGT_BRAJA (Q89DJ5) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 282

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 547 PVVVAAHPSEANQFAL----GLTDGSVYVMEPLESERKWGNPPPL 425
           P+ +   P     +AL    G+  G +Y    L++ER WG P P+
Sbjct: 14  PIAIEIGPFAIRWYALAYICGIVFGWLYARSLLKNERLWGGPAPI 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,213,750
Number of Sequences: 219361
Number of extensions: 1648318
Number of successful extensions: 4419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4414
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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