ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h... 101 4e-22
2CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val... 100 1e-21
3CD48A_ARATH (P54609) Cell division control protein 48 homolog A ... 98 4e-21
4CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ... 98 5e-21
5CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog 96 2e-20
6TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h... 82 4e-16
7TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase h... 80 1e-15
8TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER... 77 8e-15
9TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER... 77 8e-15
10TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T... 77 8e-15
11TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T... 77 8e-15
12TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T... 76 2e-14
13CDC48_YEAST (P25694) Cell division control protein 48 59 4e-09
14CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48 50 1e-06
15SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter fa... 31 0.81
16CDAT_PLAF7 (P46468) Putative cell division cycle ATPase 29 2.4
17SO2A1_RAT (Q00910) Solute carrier organic anion transporter fami... 29 3.1
18RUVC_PROAC (Q6A8K9) Crossover junction endodeoxyribonuclease ruv... 28 4.0
19Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297 28 4.0
20SO2A1_HUMAN (Q92959) Solute carrier organic anion transporter fa... 28 5.3
21LCE2A_HUMAN (Q5TA79) Late cornified envelope protein 2A (Late en... 28 6.9
22SAV_SULAC (Q07590) SAV protein 28 6.9
23STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein) 28 6.9
24S45A3_MACFA (Q95KI5) Solute carrier family 45 member 3 (Prostate... 28 6.9
25LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late en... 28 6.9
26Y802_XYLFT (Q87D84) UPF0149 protein PD0802 27 9.0
27RS3A_HELAN (P49198) 40S ribosomal protein S3a 27 9.0
28SPRL_STRMU (Q8DUX9) Protein sprT-like 27 9.0

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score =  101 bits (252), Expect = 4e-22
 Identities = 48/53 (90%), Positives = 51/53 (96%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 235
           +E+AEI+A HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD P
Sbjct: 729 EEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAP 781



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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score = 99.8 bits (247), Expect = 1e-21
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 241
           DEVAEI+AAHFEESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP+
Sbjct: 731 DEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPE 781



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>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 48/50 (96%), Positives = 50/50 (100%)
 Frame = -3

Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 247
           VDEV+EI+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 729 VDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778



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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 97.8 bits (242), Expect = 5e-21
 Identities = 48/49 (97%), Positives = 49/49 (100%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 247
           DEV+EIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 730 DEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778



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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 47/52 (90%), Positives = 49/52 (94%)
 Frame = -3

Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 241
           VDEV EI+ AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF D
Sbjct: 728 VDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD 779



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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 81.6 bits (200), Expect = 4e-16
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = -3

Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 238
           VD V EI  AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP +
Sbjct: 736 VDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 788



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>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/52 (71%), Positives = 44/52 (84%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 238
           D V EI  AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP +
Sbjct: 735 DPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 786



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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 39/50 (78%), Positives = 43/50 (86%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244
           D V EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773



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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 39/50 (78%), Positives = 43/50 (86%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244
           D V EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773



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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 39/50 (78%), Positives = 43/50 (86%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244
           D V EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773



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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 39/50 (78%), Positives = 43/50 (86%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244
           D V EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773



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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 39/50 (78%), Positives = 42/50 (84%)
 Frame = -3

Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244
           D V EIR  HFEE+M+ ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 726 DPVPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774



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>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = -3

Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 235
           VD V  I   HF E+MK A+RSVSDA++R+Y+A++Q ++ SRG  S F F D P
Sbjct: 747 VDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRGQFSNFNFNDAP 800



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>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = -3

Query: 387 VAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGF-GSEFRFPD 241
           V++++  H EE+MK ARRSVSDA++R+Y+A+A  L  SRG  G +F   D
Sbjct: 748 VSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGLTGFQFDSAD 797



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>SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter family member 2A1|
           (Solute carrier family 21 member 2) (Prostaglandin
           transporter) (PGT)
          Length = 643

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
 Frame = -2

Query: 373 GCPLRGVDEVCPPECERRRHPQVPG-----LCPDSAAVP 272
           GC    V EV PP      HPQ P      LCPDS   P
Sbjct: 418 GCSTPAVAEVYPPSTPSSIHPQPPACRRDCLCPDSVFHP 456



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>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 393  DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTL 283
            D V  +   HF+ + K AR S+   D+ KY+ F + L
Sbjct: 1188 DPVPTLSKKHFDLAFKNARISIQPEDVLKYEKFKEKL 1224



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>SO2A1_RAT (Q00910) Solute carrier organic anion transporter family member 2A1|
           (Solute carrier family 21 member 2) (Prostaglandin
           transporter) (PGT) (Matrin F/G 1)
          Length = 643

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -2

Query: 373 GCPLRGVDEVCPPECERRRHPQVPGLCPDSAAVP 272
           GC    V EV PP      HPQ P  C    + P
Sbjct: 418 GCSTSAVAEVYPPSTSSSIHPQQPPACRRDCSCP 451



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>RUVC_PROAC (Q6A8K9) Crossover junction endodeoxyribonuclease ruvC (EC|
           3.1.22.4) (Holliday junction nuclease ruvC) (Holliday
           juction resolvase ruvC)
          Length = 196

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 247 EPELTAESTGLLQS-LGKGLVLADVGVAHTPAGI--LHRLLEV 366
           +P LT    G+++  LG  L L  VGV  TPA +   HRLL +
Sbjct: 19  DPGLTRCGVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRI 61



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>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297|
          Length = 733

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 381 EIRAAHFEESMKYARRSVSDADIRKYQ 301
           +I   HFEE++K  R S++  D+ KY+
Sbjct: 696 KITKKHFEEALKKVRPSLTKEDVEKYE 722



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>SO2A1_HUMAN (Q92959) Solute carrier organic anion transporter family member 2A1|
           (Solute carrier family 21 member 2) (Prostaglandin
           transporter) (PGT)
          Length = 643

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
 Frame = -2

Query: 373 GCPLRGVDEVCPPECERRRHPQVPGL-----CPDSAAVP 272
           GC    V EV PP      HPQ P       CPDS   P
Sbjct: 419 GCSTPTVAEVYPPSTSSSIHPQSPACRRDCSCPDSIFHP 457



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>LCE2A_HUMAN (Q5TA79) Late cornified envelope protein 2A (Late envelope protein|
           9)
          Length = 106

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 343 CPPECERRRHPQVPGLCP 290
           CPP+C  +  PQ P  CP
Sbjct: 20  CPPKCPPKCRPQCPAPCP 37



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>SAV_SULAC (Q07590) SAV protein|
          Length = 780

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/30 (30%), Positives = 23/30 (76%)
 Frame = -3

Query: 363 FEESMKYARRSVSDADIRKYQAFAQTLQQS 274
           FE+++   + S++ ADI++Y+ F++ L+++
Sbjct: 749 FEKALNVVKASLTQADIQRYERFSKELKRA 778



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>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 266  NPRDCCRVWAKAWYLRMSASLTLRRAYFIDSSKW 367
            +P  C R ++K W   +  S+++R AY+I SS W
Sbjct: 1905 SPETCWRHYSKFWTTPLH-SISMRGAYWIPSSFW 1937



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>S45A3_MACFA (Q95KI5) Solute carrier family 45 member 3 (Prostate|
           cancer-associated protein 6) (Prostein)
          Length = 553

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
 Frame = +2

Query: 269 PRDCCRVWAKAWYLRMSASL------------TLRRAYFIDSSKWAALISAT 388
           P  CC  WA+  +  + A L            TLRR +  +   W AL++ T
Sbjct: 238 PSHCCPCWARLAFRNLGALLPRLHQLCCRMPRTLRRLFVAELCSWMALMTFT 289



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>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein|
           18) (Small proline-rich-like epidermal differentiation
           complex protein 5A)
          Length = 118

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 343 CPPECERRRHPQVPGLCPDSAAVP 272
           CPP+C  +  P+ P  CP   + P
Sbjct: 20  CPPKCTPKCPPKCPPKCPPQCSAP 43



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>Y802_XYLFT (Q87D84) UPF0149 protein PD0802|
          Length = 185

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +1

Query: 241 IREPELTAESTGLLQSLG------KGLVLADVGVAHTPAG-ILHRLLEVGSPDL 381
           +  PEL    +GLL   G        ++LAD GVA  P G +L RL +  +  L
Sbjct: 24  VTAPELHGSLSGLLAGGGCNGPDWLAMILADAGVAAPPKGSVLERLYQATASQL 77



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>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 253 ELTAESTGLLQSLGKGLVLADVGVAHTPAGILHRLLEVGSPDLSH 387
           ++ A S  + +++GK LV    G      G+ HR+ EV   DL +
Sbjct: 30  DIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQN 74



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>SPRL_STRMU (Q8DUX9) Protein sprT-like|
          Length = 145

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
 Frame = -2

Query: 151 NPPRC----CGLNLPVISFVYCYVLLWYA----RHGQTMYLKLLLGCTDIRYLPVICS 2
           NP  C     G    ++    C+  L+YA    RHG   +  LLL    +RY P I S
Sbjct: 46  NPKFCKKGDAGTFRKIVRHELCHYHLYYAGKGYRHGDKDFKDLLLQVNGVRYAPSIQS 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,425,598
Number of Sequences: 219361
Number of extensions: 774112
Number of successful extensions: 2115
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2111
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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