ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61j18 |
|---|---|
| Clone Library Name | barley_pub |
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 101 bits (252), Expect = 4e-22 Identities = 48/53 (90%), Positives = 51/53 (96%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 235 +E+AEI+A HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD P Sbjct: 729 EEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAP 781
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 99.8 bits (247), Expect = 1e-21 Identities = 48/51 (94%), Positives = 51/51 (100%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 241 DEVAEI+AAHFEESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP+ Sbjct: 731 DEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPE 781
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 98.2 bits (243), Expect = 4e-21 Identities = 48/50 (96%), Positives = 50/50 (100%) Frame = -3 Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 247 VDEV+EI+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF Sbjct: 729 VDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 97.8 bits (242), Expect = 5e-21 Identities = 48/49 (97%), Positives = 49/49 (100%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 247 DEV+EIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF Sbjct: 730 DEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 96.3 bits (238), Expect = 2e-20 Identities = 47/52 (90%), Positives = 49/52 (94%) Frame = -3 Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 241 VDEV EI+ AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF D Sbjct: 728 VDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD 779
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1| (p97/CDC48 homolog 1) Length = 809 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/53 (71%), Positives = 45/53 (84%) Frame = -3 Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 238 VD V EI AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP + Sbjct: 736 VDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 788
>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2| (p97/CDC48 homolog 2) Length = 810 Score = 80.1 bits (196), Expect = 1e-15 Identities = 37/52 (71%), Positives = 44/52 (84%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 238 D V EI AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP + Sbjct: 735 DPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 786
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 77.4 bits (189), Expect = 8e-15 Identities = 39/50 (78%), Positives = 43/50 (86%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244 D V EIR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 77.4 bits (189), Expect = 8e-15 Identities = 39/50 (78%), Positives = 43/50 (86%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244 D V EIR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 77.4 bits (189), Expect = 8e-15 Identities = 39/50 (78%), Positives = 43/50 (86%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244 D V EIR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 77.4 bits (189), Expect = 8e-15 Identities = 39/50 (78%), Positives = 43/50 (86%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244 D V EIR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 725 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) Length = 805 Score = 75.9 bits (185), Expect = 2e-14 Identities = 39/50 (78%), Positives = 42/50 (84%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 244 D V EIR HFEE+M+ ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 726 DPVPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774
>CDC48_YEAST (P25694) Cell division control protein 48| Length = 835 Score = 58.5 bits (140), Expect = 4e-09 Identities = 28/54 (51%), Positives = 38/54 (70%) Frame = -3 Query: 396 VDEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 235 VD V I HF E+MK A+RSVSDA++R+Y+A++Q ++ SRG S F F D P Sbjct: 747 VDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRGQFSNFNFNDAP 800
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%) Frame = -3 Query: 387 VAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGF-GSEFRFPD 241 V++++ H EE+MK ARRSVSDA++R+Y+A+A L SRG G +F D Sbjct: 748 VSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGLTGFQFDSAD 797
>SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter family member 2A1| (Solute carrier family 21 member 2) (Prostaglandin transporter) (PGT) Length = 643 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 5/39 (12%) Frame = -2 Query: 373 GCPLRGVDEVCPPECERRRHPQVPG-----LCPDSAAVP 272 GC V EV PP HPQ P LCPDS P Sbjct: 418 GCSTPAVAEVYPPSTPSSIHPQPPACRRDCLCPDSVFHP 456
>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase| Length = 1229 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 393 DEVAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTL 283 D V + HF+ + K AR S+ D+ KY+ F + L Sbjct: 1188 DPVPTLSKKHFDLAFKNARISIQPEDVLKYEKFKEKL 1224
>SO2A1_RAT (Q00910) Solute carrier organic anion transporter family member 2A1| (Solute carrier family 21 member 2) (Prostaglandin transporter) (PGT) (Matrin F/G 1) Length = 643 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -2 Query: 373 GCPLRGVDEVCPPECERRRHPQVPGLCPDSAAVP 272 GC V EV PP HPQ P C + P Sbjct: 418 GCSTSAVAEVYPPSTSSSIHPQQPPACRRDCSCP 451
>RUVC_PROAC (Q6A8K9) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 196 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +1 Query: 247 EPELTAESTGLLQS-LGKGLVLADVGVAHTPAGI--LHRLLEV 366 +P LT G+++ LG L L VGV TPA + HRLL + Sbjct: 19 DPGLTRCGVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRI 61
>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297| Length = 733 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 381 EIRAAHFEESMKYARRSVSDADIRKYQ 301 +I HFEE++K R S++ D+ KY+ Sbjct: 696 KITKKHFEEALKKVRPSLTKEDVEKYE 722
>SO2A1_HUMAN (Q92959) Solute carrier organic anion transporter family member 2A1| (Solute carrier family 21 member 2) (Prostaglandin transporter) (PGT) Length = 643 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 5/39 (12%) Frame = -2 Query: 373 GCPLRGVDEVCPPECERRRHPQVPGL-----CPDSAAVP 272 GC V EV PP HPQ P CPDS P Sbjct: 419 GCSTPTVAEVYPPSTSSSIHPQSPACRRDCSCPDSIFHP 457
>LCE2A_HUMAN (Q5TA79) Late cornified envelope protein 2A (Late envelope protein| 9) Length = 106 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -2 Query: 343 CPPECERRRHPQVPGLCP 290 CPP+C + PQ P CP Sbjct: 20 CPPKCPPKCRPQCPAPCP 37
>SAV_SULAC (Q07590) SAV protein| Length = 780 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/30 (30%), Positives = 23/30 (76%) Frame = -3 Query: 363 FEESMKYARRSVSDADIRKYQAFAQTLQQS 274 FE+++ + S++ ADI++Y+ F++ L+++ Sbjct: 749 FEKALNVVKASLTQADIQRYERFSKELKRA 778
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 266 NPRDCCRVWAKAWYLRMSASLTLRRAYFIDSSKW 367 +P C R ++K W + S+++R AY+I SS W Sbjct: 1905 SPETCWRHYSKFWTTPLH-SISMRGAYWIPSSFW 1937
>S45A3_MACFA (Q95KI5) Solute carrier family 45 member 3 (Prostate| cancer-associated protein 6) (Prostein) Length = 553 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 12/52 (23%) Frame = +2 Query: 269 PRDCCRVWAKAWYLRMSASL------------TLRRAYFIDSSKWAALISAT 388 P CC WA+ + + A L TLRR + + W AL++ T Sbjct: 238 PSHCCPCWARLAFRNLGALLPRLHQLCCRMPRTLRRLFVAELCSWMALMTFT 289
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -2 Query: 343 CPPECERRRHPQVPGLCPDSAAVP 272 CPP+C + P+ P CP + P Sbjct: 20 CPPKCTPKCPPKCPPKCPPQCSAP 43
>Y802_XYLFT (Q87D84) UPF0149 protein PD0802| Length = 185 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Frame = +1 Query: 241 IREPELTAESTGLLQSLG------KGLVLADVGVAHTPAG-ILHRLLEVGSPDL 381 + PEL +GLL G ++LAD GVA P G +L RL + + L Sbjct: 24 VTAPELHGSLSGLLAGGGCNGPDWLAMILADAGVAAPPKGSVLERLYQATASQL 77
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 253 ELTAESTGLLQSLGKGLVLADVGVAHTPAGILHRLLEVGSPDLSH 387 ++ A S + +++GK LV G G+ HR+ EV DL + Sbjct: 30 DIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQN 74
>SPRL_STRMU (Q8DUX9) Protein sprT-like| Length = 145 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Frame = -2 Query: 151 NPPRC----CGLNLPVISFVYCYVLLWYA----RHGQTMYLKLLLGCTDIRYLPVICS 2 NP C G ++ C+ L+YA RHG + LLL +RY P I S Sbjct: 46 NPKFCKKGDAGTFRKIVRHELCHYHLYYAGKGYRHGDKDFKDLLLQVNGVRYAPSIQS 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,425,598 Number of Sequences: 219361 Number of extensions: 774112 Number of successful extensions: 2115 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2111 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
