Clone Name | rbah61j18 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Plus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2834414 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2834473 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2834474 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2834533 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2834534 tcctcgaagtgagccgccttgatctcagc 2834562
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Plus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2834525 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2834584 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2834585 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2834644 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2834645 tcctcgaagtgagccgccttgatctcagc 2834673
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Plus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 106370 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 106429 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 106430 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 106489 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 106490 tcctcgaagtgagccgccttgatctcagc 106518
>dbj|AK121641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055F21, full insert sequence Length = 2914 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2470 ggctggtcagtgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2411 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2410 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2351 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2350 tcctcgaagtgagccgccttgatctcagc 2322
>dbj|AK099712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082G14, full insert sequence Length = 2680 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2470 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2411 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2410 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2351 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2350 tcctcgaagtgagccgccttgatctcagc 2322
>dbj|AK099889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112O07, full insert sequence Length = 2685 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2470 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2411 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2410 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2351 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2350 tcctcgaagtgagccgccttgatctcagc 2322
>dbj|AK098980.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093N05, full insert sequence Length = 2701 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2470 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2411 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2410 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2351 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2350 tcctcgaagtgagccgccttgatctcagc 2322
>dbj|AK098874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D04, full insert sequence Length = 2685 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2470 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2411 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2410 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2351 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2350 tcctcgaagtgagccgccttgatctcagc 2322
>dbj|AK064955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A05, full insert sequence Length = 2685 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 2470 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 2411 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 2410 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 2351 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 2350 tcctcgaagtgagccgccttgatctcagc 2322
>dbj|AK059991.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B06, full insert sequence Length = 1232 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 236 ggctgatcagggaaccggaactcactgccgaatccacgggactgctgcagagtctgggca 295 ||||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 1022 ggctggtcagcgaacctaaactcggtgccgaacccacgagactgctgcagagtctgggcg 963 Query: 296 aaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgac 355 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 962 aaggcctggtacttgcggatgtcggcgtcactcacactccggcgtgcgtacttcatcgac 903 Query: 356 tcctcgaagtgggcagccctgatctcagc 384 ||||||||||| || ||| |||||||||| Sbjct: 902 tcctcgaagtgagccgccttgatctcagc 874
>gb|AY107375.1| Zea mays PCO097021 mRNA sequence Length = 711 Score = 167 bits (84), Expect = 3e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 247 gaaccggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggta 306 |||||||||||| ||||| || |||||||||||||| || |||||||| ||||||||||| Sbjct: 374 gaaccggaactcgctgccaaacccacgggactgctggagtgtctgggcgaaggcctggta 315 Query: 307 cttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtg 366 ||||||||||||||| || || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 314 cttgcggatgtcggcatcactgacactgcggcgggcgtacttcatggactcctcgaagtg 255 Query: 367 ggcagccctgatctcagccacctcgtccacct 398 ||||||| ||||||| || | |||||||||| Sbjct: 254 ggcagccatgatctcggcaatgtcgtccacct 223
>gb|BT017848.1| Zea mays clone EL01N0510F05.c mRNA sequence Length = 646 Score = 159 bits (80), Expect = 8e-36 Identities = 125/140 (89%) Strand = Plus / Minus Query: 245 gggaaccggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctgg 304 |||||||||||||| ||||| || || ||||||||||| || |||||||| ||||||||| Sbjct: 394 gggaaccggaactcgctgccaaacccgcgggactgctggagtgtctgggcgaaggcctgg 335 Query: 305 tacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaag 364 |||||||||||||||||||| ||||| || || ||||| |||||||| |||||||||||| Sbjct: 334 tacttgcggatgtcggcgtcactcacgctgcgacgggcgtacttcatggactcctcgaag 275 Query: 365 tgggcagccctgatctcagc 384 || |||||| |||||||||| Sbjct: 274 tgagcagccttgatctcagc 255 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 149 atttagctatataagtcgtcatcttcagctgccgctgcagcggatgcaaaaggatcg 205 ||||| || |||||||| ||||| |||||||| |||||||||||||| || |||||| Sbjct: 481 atttaactgtataagtcatcatcgtcagctgctgctgcagcggatgcgaagggatcg 425
>gb|AY108324.1| Zea mays PCO097023 mRNA sequence Length = 1794 Score = 159 bits (80), Expect = 8e-36 Identities = 125/140 (89%) Strand = Plus / Minus Query: 245 gggaaccggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctgg 304 |||||||||||||| ||||| || || ||||||||||| || |||||||| ||||||||| Sbjct: 1450 gggaaccggaactcgctgccaaacccgcgggactgctggagtgtctgggcgaaggcctgg 1391 Query: 305 tacttgcggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaag 364 |||||||||||||||||||| ||||| || || ||||| |||||||| |||||||||||| Sbjct: 1390 tacttgcggatgtcggcgtcactcacgctgcgacgggcgtacttcatggactcctcgaag 1331 Query: 365 tgggcagccctgatctcagc 384 || |||||| |||||||||| Sbjct: 1330 tgagcagccttgatctcagc 1311 Score = 65.9 bits (33), Expect = 9e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 149 atttagctatataagtcgtcatcttcagctgccgctgcagcggatgcaaaaggatcggca 208 ||||| || |||||||| ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 1537 atttaactgtataagtcatcatcgtcagctgctgctgcagcggatgcgaagggatcggcc 1478 Query: 209 gcagc 213 ||||| Sbjct: 1477 gcagc 1473
>ref|NM_196705.1| Oryza sativa (japonica cultivar-group) putative endoplasmic reticulum membrane fusion protein (OSJNBa0046P18.14), mRNA Length = 2454 Score = 147 bits (74), Expect = 3e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 251 cggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttg 310 |||||||||||||| || || || |||||||||| |||||||| || |||||||||||| Sbjct: 2363 cggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggtacttg 2304 Query: 311 cggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtgggca 370 ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 2303 cggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagtgggct 2244 Query: 371 gccctgatctcagc 384 ||| |||||||||| Sbjct: 2243 gccttgatctcagc 2230
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 147 bits (74), Expect = 3e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 251 cggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttg 310 |||||||||||||| || || || |||||||||| |||||||| || |||||||||||| Sbjct: 15401401 cggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggtacttg 15401342 Query: 311 cggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtgggca 370 ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 15401341 cggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagtgggct 15401282 Query: 371 gccctgatctcagc 384 ||| |||||||||| Sbjct: 15401281 gccttgatctcagc 15401268 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 21267165 cggcagcagcggcggaggcgg 21267185
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 147 bits (74), Expect = 3e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 251 cggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttg 310 |||||||||||||| || || || |||||||||| |||||||| || |||||||||||| Sbjct: 118764 cggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggtacttg 118705 Query: 311 cggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtgggca 370 ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 118704 cggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagtgggct 118645 Query: 371 gccctgatctcagc 384 ||| |||||||||| Sbjct: 118644 gccttgatctcagc 118631
>dbj|AK058908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E02, full insert sequence Length = 872 Score = 147 bits (74), Expect = 3e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 251 cggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttg 310 |||||||||||||| || || || |||||||||| |||||||| || |||||||||||| Sbjct: 521 cggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggtacttg 462 Query: 311 cggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtgggca 370 ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 461 cggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagtgggct 402 Query: 371 gccctgatctcagc 384 ||| |||||||||| Sbjct: 401 gccttgatctcagc 388
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 147 bits (74), Expect = 3e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 251 cggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttg 310 |||||||||||||| || || || |||||||||| |||||||| || |||||||||||| Sbjct: 15409642 cggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggtacttg 15409583 Query: 311 cggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtgggca 370 ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 15409582 cggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagtgggct 15409523 Query: 371 gccctgatctcagc 384 ||| |||||||||| Sbjct: 15409522 gccttgatctcagc 15409509 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 21278429 cggcagcagcggcggaggcgg 21278449
>gb|AY105040.1| Zea mays PCO097024 mRNA sequence Length = 2126 Score = 115 bits (58), Expect = 1e-22 Identities = 124/146 (84%) Strand = Plus / Minus Query: 251 cggaactcactgccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttg 310 |||||||| |||||||| |||||||||||||||| |||||||| || |||||||||||| Sbjct: 1832 cggaactcgctgccgaacccacgggactgctgcaacgtctgggcgaacgcctggtacttg 1773 Query: 311 cggatgtcggcgtcgctcacactccggcgggcatacttcatcgactcctcgaagtgggca 370 ||||| || || || || ||||| || || ||||||||||| |||||||||||||| || Sbjct: 1772 cggatatcagcatcactgacactgcgccgagcatacttcatagactcctcgaagtgagct 1713 Query: 371 gccctgatctcagccacctcgtccac 396 || ||||||| || | ||||||||| Sbjct: 1712 gctttgatctcggcaatctcgtccac 1687
>gb|AY456394.1| 'Chlorella' ellipsoidea cell division cycle protein 48 mRNA, partial cds Length = 2033 Score = 113 bits (57), Expect = 4e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 277 ctgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccg 336 ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| || Sbjct: 1709 ctgctgcagcgtctgggcaaaggcctggtacttgcggatgtctgcgtcgctgacagagcg 1650 Query: 337 gcgggcatacttcatcgactcctcgaagtgggc 369 |||||||||||||| | ||||||||||||||| Sbjct: 1649 acgggcatacttcatggcctcctcgaagtgggc 1617
>ref|NM_111819.3| Arabidopsis thaliana CDC48 (CELL DIVISION CYCLE 48); ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT3G09840 (CDC48) mRNA, complete cds Length = 2797 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 275 gactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactc 334 |||||||||| ||||| |||||||| |||||||| | |||||| || || ||||||||| Sbjct: 2460 gactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacactc 2401 Query: 335 cggcgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | || |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 2400 ctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctc 2354
>gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequence Length = 72902 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 275 gactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactc 334 |||||||||| ||||| |||||||| |||||||| | |||||| || || ||||||||| Sbjct: 44014 gactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacactc 44073 Query: 335 cggcgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | || |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 44074 ctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctc 44120
>gb|AY094434.1| Arabidopsis thaliana AT3g09840/F8A24_11 mRNA, complete cds Length = 2628 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 275 gactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactc 334 |||||||||| ||||| |||||||| |||||||| | |||||| || || ||||||||| Sbjct: 2416 gactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacactc 2357 Query: 335 cggcgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | || |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 2356 ctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctc 2310
>gb|AY065076.1| Arabidopsis thaliana putative transitional endoplasmic reticulum ATPase (F8A24.11) mRNA, complete cds Length = 2730 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 275 gactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactc 334 |||||||||| ||||| |||||||| |||||||| | |||||| || || ||||||||| Sbjct: 2450 gactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacactc 2391 Query: 335 cggcgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | || |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 2390 ctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctc 2344
>dbj|AK222120.1| Arabidopsis thaliana mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL22-93-G21 Length = 697 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 275 gactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactc 334 |||||||||| ||||| |||||||| |||||||| | |||||| || || ||||||||| Sbjct: 350 gactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacactc 291 Query: 335 cggcgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | || |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 290 ctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctc 244
>gb|U37587.1|ATU37587 Arabidopsis thaliana cell division cycle protein (CDC48) mRNA, complete cds Length = 2638 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Minus Query: 275 gactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactc 334 |||||||||| ||||| |||||||| |||||||| | |||||| || || ||||||||| Sbjct: 2399 gactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacactc 2340 Query: 335 cggcgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | || |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 2339 ctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctc 2293
>gb|BT014585.1| Lycopersicon esculentum clone 134043F, mRNA sequence Length = 2708 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 287 gtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatac 346 ||||| ||||| |||||||| ||||| || || || ||||| |||||||| ||||||||| Sbjct: 2362 gtctgagcaaatgcctggtatttgcgtatatcagcatcgctgacactccgacgggcatac 2303 Query: 347 ttcatcgactcctcgaagtg 366 ||||| |||||||| ||||| Sbjct: 2302 ttcatagactcctcaaagtg 2283
>ref|NM_165726.1| Drosophila melanogaster TER94 CG2331-RB, transcript variant B (TER94), mRNA Length = 1458 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 862 ccgaatccacgggactgctgcaaagtctgggcaaa 828
>ref|NM_058021.3| Drosophila melanogaster TER94 CG2331-RA, transcript variant A (TER94), mRNA Length = 3018 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 2426 ccgaatccacgggactgctgcaaagtctgggcaaa 2392
>gb|AC007414.6| Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR06J01, complete sequence Length = 172904 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 47748 ccgaatccacgggactgctgcaaagtctgggcaaa 47714
>gb|AC007413.5|AC007413 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR01L01, complete sequence Length = 160301 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 159195 ccgaatccacgggactgctgcaaagtctgggcaaa 159161
>gb|AY190939.1| Drosophila erecta clone DERF01_42_I03 (D1420) genomic sequence Length = 45909 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 39169 ccgaatccacgggactgctgcaaagtctgggcaaa 39135
>gb|AE003831.3| Drosophila melanogaster chromosome 2R, section 19 of 73 of the complete sequence Length = 275390 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 145041 ccgaatccacgggactgctgcaaagtctgggcaaa 145007
>gb|BT001521.1| Drosophila melanogaster LP12034 full insert cDNA Length = 1473 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 863 ccgaatccacgggactgctgcaaagtctgggcaaa 829
>gb|AF047037.1|AF047037 Drosophila melanogaster transitional endoplasmic reticulum ATPase TER94 mRNA, complete cds Length = 2550 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 2367 ccgaatccacgggactgctgcaaagtctgggcaaa 2333
>gb|AF132553.1| Drosophila melanogaster BcDNA.GM02885 (BcDNA.GM02885) mRNA, complete cds Length = 3018 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaa 297 |||||||||||||||||||||| |||||||||||| Sbjct: 2410 ccgaatccacgggactgctgcaaagtctgggcaaa 2376
>gb|BT012783.1| Lycopersicon esculentum clone 113773R, mRNA sequence Length = 2684 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 287 gtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccggcgggcatac 346 ||||| ||||| |||||||| || || || ||||| || |||||||| || || |||||| Sbjct: 2340 gtctgagcaaatgcctggtatttacgaatatcggcatcactcacacttcgtcgtgcatac 2281 Query: 347 ttcatcgactcctcgaagtgggcagccctgatctc 381 ||||| |||||||| || || |||| | ||||||| Sbjct: 2280 ttcatggactcctcaaaatgagcaggcttgatctc 2246
>ref|NM_120412.2| Arabidopsis thaliana ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT5G03340 mRNA, complete cds Length = 2671 Score = 48.1 bits (24), Expect = 0.022 Identities = 84/104 (80%) Strand = Plus / Minus Query: 278 tgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccgg 337 |||||||| ||||| ||||| || ||||||||||| || || || || |||||||| | Sbjct: 2398 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2339 Query: 338 cgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | ||||| ||||||||||| ||||| || ||||| || ||||| Sbjct: 2338 cttgcatatttcatcgactcttcgaaatgagcagctctaatctc 2295
>emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project) Length = 121552 Score = 48.1 bits (24), Expect = 0.022 Identities = 84/104 (80%) Strand = Plus / Plus Query: 278 tgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccgg 337 |||||||| ||||| ||||| || ||||||||||| || || || || |||||||| | Sbjct: 24032 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 24091 Query: 338 cgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | ||||| ||||||||||| ||||| || ||||| || ||||| Sbjct: 24092 cttgcatatttcatcgactcttcgaaatgagcagctctaatctc 24135
>gb|BT006485.1| Arabidopsis thaliana At5g03340 gene, complete cds Length = 2433 Score = 48.1 bits (24), Expect = 0.022 Identities = 84/104 (80%) Strand = Plus / Minus Query: 278 tgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccgg 337 |||||||| ||||| ||||| || ||||||||||| || || || || |||||||| | Sbjct: 2303 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2244 Query: 338 cgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | ||||| ||||||||||| ||||| || ||||| || ||||| Sbjct: 2243 cttgcatatttcatcgactcttcgaaatgagcagctctaatctc 2200
>dbj|AK118571.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL19-80-L03 Length = 2671 Score = 48.1 bits (24), Expect = 0.022 Identities = 84/104 (80%) Strand = Plus / Minus Query: 278 tgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccgg 337 |||||||| ||||| ||||| || ||||||||||| || || || || |||||||| | Sbjct: 2398 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2339 Query: 338 cgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | ||||| ||||||||||| ||||| || ||||| || ||||| Sbjct: 2338 cttgcatatttcatcgactcttcgaaatgagcagctctaatctc 2295
>dbj|AK117125.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL16-66-D01 Length = 2664 Score = 48.1 bits (24), Expect = 0.022 Identities = 84/104 (80%) Strand = Plus / Minus Query: 278 tgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacactccgg 337 |||||||| ||||| ||||| || ||||||||||| || || || || |||||||| | Sbjct: 2391 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2332 Query: 338 cgggcatacttcatcgactcctcgaagtgggcagccctgatctc 381 | ||||| ||||||||||| ||||| || ||||| || ||||| Sbjct: 2331 cttgcatatttcatcgactcttcgaaatgagcagctctaatctc 2288
>ref|XM_864589.1| PREDICTED: Bos taurus hypothetical protein LOC613623 (LOC613623), mRNA Length = 1038 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 gcggaggcggtgcccgcggccgg 237 ||||||||||||||||||||||| Sbjct: 391 gcggaggcggtgcccgcggccgg 413
>emb|Y09396.1|CACAFP C.annuum mRNA for CDC48p-like protein Length = 2682 Score = 44.1 bits (22), Expect = 0.34 Identities = 73/90 (81%) Strand = Plus / Minus Query: 274 ggactgctgcagagtctgggcaaaggcctggtacttgcggatgtcggcgtcgctcacact 333 ||||||||| | ||||| ||||| |||||||| ||||| || || || || || ||||| Sbjct: 2340 ggactgctgtaatgtctgagcaaatgcctggtatttgcgtatatcagcatcactgacact 2281 Query: 334 ccggcgggcatacttcatcgactcctcgaa 363 || || ||||||||||| || |||||||| Sbjct: 2280 acgtcgtgcatacttcatagattcctcgaa 2251
>ref|XM_993802.1| PREDICTED: Mus musculus hypothetical protein LOC672481 (LOC672481), mRNA Length = 1059 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 561 cggcagcagcggcggaggcgg 541
>ref|XM_980903.1| PREDICTED: Mus musculus hypothetical protein LOC666010 (LOC666010), mRNA Length = 1071 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 561 cggcagcagcggcggaggcgg 541
>emb|BX028305.1|CNS08U05 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA42BC03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1003 Score = 42.1 bits (21), Expect = 1.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttgcggatgtcg 319 ||||||||||| || |||||||| || |||||||| | |||||||||||||||| Sbjct: 831 ccgaatccacgagattgctgcagcgtttgggcaaacatttcgtacttgcggatgtcg 887
>emb|BX027063.1|CNS08T1N Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA40CD02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1007 Score = 42.1 bits (21), Expect = 1.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttgcggatgtcg 319 ||||||||||| || |||||||| || |||||||| | |||||||||||||||| Sbjct: 838 ccgaatccacgagattgctgcagcgtttgggcaaacatttcgtacttgcggatgtcg 894
>emb|AL669979.13| Mouse DNA sequence from clone RP23-93O11 on chromosome 11 Contains an H+ transporting, mitochondria ATP synthase F0 complex subunit g (Atp5l) pseudogene, the Peli1 gene for pellino 1, a novel pseudogene, a ribosomal protein large P0 (Rplp0) pseudogene, the Vps54 gene for vacuolar protein sorting 54 (yeast), a acyl-Coenzyme A dehydrogenase family (Acad) pseudogene and two CpG islands, complete sequence Length = 206768 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 152454 cggcagcagcggcggaggcgg 152474
>gb|AC020934.9| Homo sapiens chromosome 19 clone CTD-2265O21, complete sequence Length = 119347 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 73466 cggcagcagcggcggaggcgg 73446
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 agagtctgggcaaaggcctgg 304 ||||||||||||||||||||| Sbjct: 792266 agagtctgggcaaaggcctgg 792246
>emb|CR609181.1| full-length cDNA clone CS0DJ014YJ23 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1717 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 70 cggcagcagcggcggaggcgg 50
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 67194 cggcagcagcggcggaggcgg 67174
>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence Length = 38975 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 16064 cggcagcagcggcggaggcgg 16044
>ref|XM_315644.2| Anopheles gambiae str. PEST ENSANGP00000022801 (ENSANGG00000019258), partial mRNA Length = 2559 Score = 42.1 bits (21), Expect = 1.3 Identities = 48/57 (84%) Strand = Plus / Minus Query: 263 ccgaatccacgggactgctgcagagtctgggcaaaggcctggtacttgcggatgtcg 319 ||||||||||| || |||||||| || |||||||| | |||||||||||||||| Sbjct: 2300 ccgaatccacgagattgctgcagcgtttgggcaaacatttcgtacttgcggatgtcg 2244
>dbj|AK063684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E11, full insert sequence Length = 800 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cggcagcagcggcggaggcgg 224 ||||||||||||||||||||| Sbjct: 228 cggcagcagcggcggaggcgg 248
>ref|XM_516034.1| PREDICTED: Pan troglodytes similar to frizzled 2 (LOC459881), mRNA Length = 3168 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 agcggcggaggcggtgcccgcggc 234 |||||||||||||||| ||||||| Sbjct: 1258 agcggcggaggcggtgtccgcggc 1235
>ref|NM_175719.1| Homo sapiens thyroid peroxidase (TPO), transcript variant 2, mRNA Length = 2969 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 945 aggcggtgcccgcggccggc 926
>ref|NM_175720.1| Homo sapiens thyroid peroxidase (TPO), transcript variant 3, mRNA Length = 3005 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 940 aggcggtgcccgcggccggc 921
>ref|NM_175721.1| Homo sapiens thyroid peroxidase (TPO), transcript variant 4, mRNA Length = 3003 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 940 aggcggtgcccgcggccggc 921
>ref|XM_525669.1| PREDICTED: Pan troglodytes similar to Thyroid peroxidase precursor (TPO) (LOC470287), mRNA Length = 6150 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 2821 aggcggtgcccgcggccggc 2802
>ref|NM_000547.3| Homo sapiens thyroid peroxidase (TPO), transcript variant 1, mRNA Length = 3135 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 940 aggcggtgcccgcggccggc 921
>gb|AC092241.2| Drosophila melanogaster clone BACR09F02, complete sequence Length = 178190 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 156284 ggcagcagcggcggaggcgg 156303
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gctgccgctgcagcggatgc 195 |||||||||||||||||||| Sbjct: 1334527 gctgccgctgcagcggatgc 1334546
>gb|AC150554.1| Drosophila melanogaster clone BACR21O10, complete sequence Length = 193926 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 34527 cagcagcggcggaggcggtg 34546
>ref|XM_959072.1| Neurospora crassa OR74A hypothetical protein (NCU03072.1) partial mRNA Length = 3276 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 tcggcagcagcggcggaggcggtg 226 |||||||||||||||| ||||||| Sbjct: 3155 tcggcagcagcggcggtggcggtg 3178
>ref|XM_330507.1| Neurospora crassa OR74A hypothetical protein (NCU03072.1) partial mRNA Length = 3276 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 tcggcagcagcggcggaggcggtg 226 |||||||||||||||| ||||||| Sbjct: 3155 tcggcagcagcggcggtggcggtg 3178
>ref|XM_847252.1| PREDICTED: Canis familiaris similar to delta-notch-like EGF repeat-containing transmembrane (LOC609904), mRNA Length = 2219 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cttcagctgccgctgcagcg 190 |||||||||||||||||||| Sbjct: 1275 cttcagctgccgctgcagcg 1294
>ref|XM_381999.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01823.1) partial mRNA Length = 1059 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cgtcatcttcagctgccgct 184 |||||||||||||||||||| Sbjct: 946 cgtcatcttcagctgccgct 927
>emb|CR693833.2|CNS0FYB9 Tetraodon nigroviridis full-length cDNA Length = 1178 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 cggcagcagcggcggaggcggtgc 227 ||||||||||||||| |||||||| Sbjct: 1109 cggcagcagcggcggcggcggtgc 1132
>gb|BC041486.2| Homo sapiens cDNA clone IMAGE:5492202, partial cds Length = 2447 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 actgctgcagagtctgggca 295 |||||||||||||||||||| Sbjct: 156 actgctgcagagtctgggca 137
>emb|AL133378.16| Human DNA sequence from clone RP1-91B17 on chromosome 6q13-14.3 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 113826 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aataattttaagtacatagt 64 |||||||||||||||||||| Sbjct: 96361 aataattttaagtacatagt 96342
>gb|AC090022.12| Homo sapiens 12 BAC RP11-154D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126469 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 taataattttaagtacatag 63 |||||||||||||||||||| Sbjct: 64745 taataattttaagtacatag 64764
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gctgccgctgcagcggatgc 195 |||||||||||||||||||| Sbjct: 301253 gctgccgctgcagcggatgc 301272
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gctgccgctgcagcggatgc 195 |||||||||||||||||||| Sbjct: 21690 gctgccgctgcagcggatgc 21709
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ggaggcggtgcccgcggccg 236 |||||||||||||||||||| Sbjct: 126383 ggaggcggtgcccgcggccg 126402
>ref|NM_204952.1| Gallus gallus forkhead box D2 (FOXD2), mRNA Length = 1708 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 148 ggcagcagcggcggaggcgg 167
>gb|AC122687.2| Homo sapiens 12 BAC RP13-501J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141411 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 attttaagtacatagtttga 68 |||||||||||||||||||| Sbjct: 1854 attttaagtacatagtttga 1873
>gb|AC124943.4| Homo sapiens 12 BAC RP11-20E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 47466 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 attttaagtacatagtttga 68 |||||||||||||||||||| Sbjct: 148 attttaagtacatagtttga 129
>ref|NM_143742.2| Drosophila melanogaster GCR(ich) CG5812-RA (GCR(ich)), mRNA Length = 1618 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 404 cagcagcggcggaggcggtg 423
>ref|NM_057215.3| Drosophila melanogaster abrupt CG4807-RB, transcript variant B (ab), mRNA Length = 5110 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 2657 ggcagcagcggcggaggcgg 2676
>ref|NM_057214.3| Drosophila melanogaster abrupt CG4807-RA, transcript variant A (ab), mRNA Length = 5140 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 2687 ggcagcagcggcggaggcgg 2706
>gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complete sequence Length = 140401 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 131778 ggcagcagcggcggaggcgg 131759
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gcggaggcggtgcccgcggc 234 |||||||||||||||||||| Sbjct: 15075 gcggaggcggtgcccgcggc 15094
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcggtgc 227 |||| ||||||||||||||||||| Sbjct: 24840470 cggcggcagcggcggaggcggtgc 24840447
>gb|AC007984.4|AC007984 Drosophila melanogaster, chromosome 3R, region 97D-97E, BAC clone BACR05C10, complete sequence Length = 174894 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 143639 cagcagcggcggaggcggtg 143658
>gb|AC008216.3|AC008216 Drosophila melanogaster, chromosome 3R, region 97E-97E, BAC clone BACR27C22, complete sequence Length = 179486 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 9125 cagcagcggcggaggcggtg 9144
>gb|DQ011222.1| Homo sapiens thyroid peroxidase (TPO) gene, complete cds Length = 133236 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 65638 aggcggtgcccgcggccggc 65619
>gb|AC105450.1| Homo sapiens BAC clone RP11-112B11 from 2, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 66133 aggcggtgcccgcggccggc 66152
>gb|BT004476.1| Drosophila melanogaster LP07342 full insert cDNA Length = 1608 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 392 cagcagcggcggaggcggtg 411
>gb|BT003807.1| Drosophila melanogaster AT11330 full insert cDNA Length = 1428 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 538 ggcagcagcggcggaggcgg 557
>gb|AC108489.5| Homo sapiens BAC clone RP13-981I10 from 2, complete sequence Length = 167463 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 159153 aggcggtgcccgcggccggc 159134
>dbj|AK174948.1| Ciona intestinalis cDNA, clone:citb066a12, full insert sequence Length = 1101 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 taccagagcaaaacataaca 100 |||||||||||||||||||| Sbjct: 82 taccagagcaaaacataaca 63
>gb|AC006073.1|AC006073 Drosophila melanogaster, chromosome 2L, region 32D3-32E2, P1 clones DS05055 and DS02287, complete sequence Length = 94440 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 77763 ggcagcagcggcggaggcgg 77782
>gb|M17755.2|HUMTPOC Homo sapiens thyroid peroxidase (TPO) mRNA, complete cds Length = 3060 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 940 aggcggtgcccgcggccggc 921
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete sequence Length = 222554 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 33192 cagcagcggcggaggcggtg 33211
>gb|AE003631.4| Drosophila melanogaster chromosome 2L, section 40 of 83 of the complete sequence Length = 256684 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 201119 ggcagcagcggcggaggcgg 201138
>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208102 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 actgctgcagagtctgggca 295 |||||||||||||||||||| Sbjct: 149462 actgctgcagagtctgggca 149481
>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 242832 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 actgctgcagagtctgggca 295 |||||||||||||||||||| Sbjct: 52238 actgctgcagagtctgggca 52257
>gb|BT001583.1| Drosophila melanogaster RE25924 full insert cDNA Length = 4854 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 2658 ggcagcagcggcggaggcgg 2677
>gb|U37272.1|GGU37272 Gallus gallus winged helix protein CWH-1 mRNA, complete cds Length = 1708 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 148 ggcagcagcggcggaggcgg 167
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 cggcagcagcggcggaggcggtgc 227 |||| ||||||||||||||||||| Sbjct: 24768676 cggcggcagcggcggaggcggtgc 24768653
>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132741 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 cggcagcagcggcggaggcggtgc 227 |||| ||||||||||||||||||| Sbjct: 124398 cggcggcagcggcggaggcggtgc 124421
>gb|BC095448.1| Homo sapiens thyroid peroxidase, mRNA (cDNA clone MGC:111197 IMAGE:30329791), complete cds Length = 3090 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 940 aggcggtgcccgcggccggc 921
>dbj|AB208960.1| Homo sapiens mRNA for thyroid peroxidase isoform d variant protein Length = 5392 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 643 aggcggtgcccgcggccggc 624
>gb|M25707.1|HUMTPO07 Human thyroid peroxidase (TPO) gene, exon 8 Length = 1996 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 717 aggcggtgcccgcggccggc 698
>gb|U43733.1|DMU43733 Drosophila melanogaster abrupt (ab) mRNA, complete cds Length = 4498 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcagcagcggcggaggcgg 224 |||||||||||||||||||| Sbjct: 2048 ggcagcagcggcggaggcgg 2067
>gb|J02970.1|HUMTPOB Human thyroid peroxidase mRNA, clone phTPO-2.4 Length = 2877 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 928 aggcggtgcccgcggccggc 909
>gb|J02969.1|HUMTPOA Human thyroid peroxidase mRNA, clone phTPO-2.8 Length = 3048 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 928 aggcggtgcccgcggccggc 909
>emb|AJ271041.1|DME271041 Drosophila melanogaster GCR(ich) gene for gly-rich protein, exons 1-2 Length = 2564 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagcagcggcggaggcggtg 226 |||||||||||||||||||| Sbjct: 1047 cagcagcggcggaggcggtg 1066
>emb|Y00406.1|HSTPO Human mRNA for thyroperoxidase Length = 3027 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 896 aggcggtgcccgcggccggc 877
>emb|X17358.1|HSASTPO2 Human mRNA from alternatively spliced TPO-2 gene for thyroid peroxidase (EC.1.11.1.7) Length = 2845 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggtgcccgcggccggc 238 |||||||||||||||||||| Sbjct: 921 aggcggtgcccgcggccggc 902 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,031,973 Number of Sequences: 3902068 Number of extensions: 3031973 Number of successful extensions: 71918 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 71357 Number of HSP's gapped (non-prelim): 556 length of query: 398 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 376 effective length of database: 17,147,199,772 effective search space: 6447347114272 effective search space used: 6447347114272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)