Clone Name | rbah61j15 |
---|---|
Clone Library Name | barley_pub |
>RPOB1_METVA (P41557) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 614 Score = 32.7 bits (73), Expect = 0.81 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 538 SSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETG 389 +SP R + + E L + + DT V +R+ G DLVI + K + G Sbjct: 302 TSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLG 351
>RL10_SYNS9 (Q3AUJ7) 50S ribosomal protein L10| Length = 175 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = -1 Query: 214 VG*LQSVLIQWMHS*TGVCYLLSDLGVLFAGYEDLLESFSVDQSVHLIYKNVFLVNLIDG 35 VG L+ +L + T + +L G+ DL + V SV + KN + IDG Sbjct: 12 VGELKGLLAE-----TELALVLDFKGLSIKEMSDLRDRLRVTNSVCKVTKNTLMRRAIDG 66 Query: 34 DCSWSKL 14 D SW+ L Sbjct: 67 DSSWANL 73
>ARGC_BUCAI (P57156) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 334 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Frame = -1 Query: 520 INQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTDKSSADAILPASKQK 341 +N + LD GF H+ E L+N+ G A+ QE K A+ A I A K Sbjct: 108 MNNKKVYLDYYGFVHEYEELLKNSVYGLAEWE-QEKIKKANLIALPGCYATCIQLALKPL 166 Query: 340 GKEDIC--STVSDINGQHGLEGDGA*GALKSLTCDIN 236 KE++ + IN G+ G G +L + C+++ Sbjct: 167 IKENVLCDKNIPIINAISGVSGAGRKASLNNSFCEVS 203
>PYRF_HANAN (P78724) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) Length = 267 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = -1 Query: 433 DLVIQEDQKFADETGTDKSSADAILPASKQKGKEDICSTVSDINGQHGLEGDGA*GALKS 254 + +I ED+KFAD T K+ + G +T SDI HG+ G+G LK Sbjct: 86 NFLIFEDRKFADIGNTVKA---------QYSGGAFKIATWSDITNAHGVTGEGIVRGLKE 136 Query: 253 LTCDINQ 233 +++Q Sbjct: 137 AASEVSQ 143
>EFG1_BORBU (O30913) Elongation factor G 1 (EF-G 1)| Length = 693 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Frame = -1 Query: 541 GSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGT---DKSSA 371 G++P + +Q + LD + + L + +G DLV+ + F + GT +K Sbjct: 140 GANPYNVKDQLRSKLDLNSVLMQIPIGLEDKHIGVIDLVLMKAYYFEGKDGTEIIEKEIP 199 Query: 370 DAILPASKQKGKEDICSTVSDINGQ 296 +L +K K +E + T++D N + Sbjct: 200 SDLLEEAKSK-REIMLDTLADFNDE 223
>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1| protein) (Retinitis pigmentosa 1 protein) Length = 2156 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Frame = -1 Query: 550 VHKGSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTDKS-- 377 V+K SP N S+T SDG+ D + LGE + D F+D+ K Sbjct: 1264 VNKAYSPKETCNPSDTFFPSDGYGVDQTSMNKACFLGE--VCSLTDTVFSDKACAQKENH 1321 Query: 376 SADAILPASKQKGKEDICSTVSDINGQHGLEGD 278 + + P + ++C+T+ +N + D Sbjct: 1322 TYEGACPIDETYVPVNVCNTIDFLNSKENTYTD 1354
>EFG_LEPIN (Q8F983) Elongation factor G (EF-G)| Length = 706 Score = 29.6 bits (65), Expect = 6.8 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Frame = -1 Query: 562 IKKKVHKGSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTD 383 I K G++P R+I Q + L + + L N G DLV + F + G D Sbjct: 144 INKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGIVDLVTMKAYYFEGKDGMD 203 Query: 382 ---KSSADAILPASKQKGKE--DICSTVSDINGQHGLEG 281 K D + +++K +E D S SD + LEG Sbjct: 204 IQEKEIPDDLKELAQKKHEELLDAASMFSDELTEALLEG 242
>EFG_LEPIC (Q72VM5) Elongation factor G (EF-G)| Length = 706 Score = 29.6 bits (65), Expect = 6.8 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Frame = -1 Query: 562 IKKKVHKGSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTD 383 I K G++P R+I Q + L + + L N G DLV + F + G D Sbjct: 144 INKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGIVDLVTMKAYYFEGKDGMD 203 Query: 382 ---KSSADAILPASKQKGKE--DICSTVSDINGQHGLEG 281 K D + +++K +E D S SD + LEG Sbjct: 204 IQEKEIPDDLKELAQKKHEELLDAASMFSDELTEALLEG 242
>DHQA_NEUCR (P11635) Quinate dehydrogenase (EC 1.1.1.24)| Length = 321 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 385 DKSSADAILPASKQKGKEDICSTVSDINGQHGLEGDGA 272 DKS DA++ ++G D V+ + GLEG GA Sbjct: 196 DKSEVDAVIAECTERGYGDRLVHVASVEQAEGLEGPGA 233
>SEMG1_SAGOE (O77733) Semenogelin-1 precursor (Semenogelin I) (SGI)| Length = 615 Score = 29.3 bits (64), Expect = 8.9 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = -1 Query: 538 SSPDRIINQSETGLDSDGFK----HDTEVRLRNASLGEADLVIQEDQKFADETGTDKSSA 371 S+ +R N E G+ D K + TE ++ + S + QED A++T + S Sbjct: 282 STEERRPNHGEKGIQKDASKGSTSNQTEDKMHDKSQKQVTTPSQEDGHRANKTSSQSSGT 341 Query: 370 DAILPASKQKGKEDICSTVSDIN 302 + P +KG + S S N Sbjct: 342 EERRPNHGEKGIQKDASKGSTSN 364
>Y7627_RHOBA (Q7UNE3) UPF0144 protein RB7627| Length = 522 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 538 SSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETG--TDKSSADA 365 +S + +++ GL+S + ++R E D ++QE Q+ ++ T + +A+ Sbjct: 101 ASGQESLRKAQRGLESSQTRLAAQMRNLTEQRAELDRLVQESQRALEKVSGMTQEEAAEK 160 Query: 364 ILPASKQKGKEDICSTV 314 ++ + +Q + +I STV Sbjct: 161 LMQSLRQDLEHEIGSTV 177
>ABTAP_HUMAN (Q9H501) ABT1-associated protein| Length = 851 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -1 Query: 496 DSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTDKSSADAILPASKQKGKED 329 DSDG+++ T+ + + ++ED + E G+D+ S + I + G +D Sbjct: 221 DSDGYENSTDGEMCDKD------ALEEDSESVSEIGSDEESENEITSVGRASGDDD 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,088,031 Number of Sequences: 219361 Number of extensions: 1539928 Number of successful extensions: 4339 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4334 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)