>RPOB1_METVA (P41557) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)|
          Length = 614

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 538 SSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETG 389
           +SP R + + E  L +   + DT V +R+   G  DLVI  + K  +  G
Sbjct: 302 TSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLG 351

>RL10_SYNS9 (Q3AUJ7) 50S ribosomal protein L10|
          Length = 175

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -1

Query: 214 VG*LQSVLIQWMHS*TGVCYLLSDLGVLFAGYEDLLESFSVDQSVHLIYKNVFLVNLIDG 35
           VG L+ +L +     T +  +L   G+      DL +   V  SV  + KN  +   IDG
Sbjct: 12  VGELKGLLAE-----TELALVLDFKGLSIKEMSDLRDRLRVTNSVCKVTKNTLMRRAIDG 66

Query: 34  DCSWSKL 14
           D SW+ L
Sbjct: 67  DSSWANL 73

>ARGC_BUCAI (P57156) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 334

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = -1

Query: 520 INQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTDKSSADAILPASKQK 341
           +N  +  LD  GF H+ E  L+N+  G A+   QE  K A+        A  I  A K  
Sbjct: 108 MNNKKVYLDYYGFVHEYEELLKNSVYGLAEWE-QEKIKKANLIALPGCYATCIQLALKPL 166

Query: 340 GKEDIC--STVSDINGQHGLEGDGA*GALKSLTCDIN 236
            KE++     +  IN   G+ G G   +L +  C+++
Sbjct: 167 IKENVLCDKNIPIINAISGVSGAGRKASLNNSFCEVS 203

>PYRF_HANAN (P78724) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase) (Uridine
           5'-monophosphate synthase) (UMP synthase)
          Length = 267

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 433 DLVIQEDQKFADETGTDKSSADAILPASKQKGKEDICSTVSDINGQHGLEGDGA*GALKS 254
           + +I ED+KFAD   T K+         +  G     +T SDI   HG+ G+G    LK 
Sbjct: 86  NFLIFEDRKFADIGNTVKA---------QYSGGAFKIATWSDITNAHGVTGEGIVRGLKE 136

Query: 253 LTCDINQ 233
              +++Q
Sbjct: 137 AASEVSQ 143

>EFG1_BORBU (O30913) Elongation factor G 1 (EF-G 1)|
          Length = 693

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = -1

Query: 541 GSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGT---DKSSA 371
           G++P  + +Q  + LD +       + L +  +G  DLV+ +   F  + GT   +K   
Sbjct: 140 GANPYNVKDQLRSKLDLNSVLMQIPIGLEDKHIGVIDLVLMKAYYFEGKDGTEIIEKEIP 199

Query: 370 DAILPASKQKGKEDICSTVSDINGQ 296
             +L  +K K +E +  T++D N +
Sbjct: 200 SDLLEEAKSK-REIMLDTLADFNDE 223

>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
            protein) (Retinitis pigmentosa 1 protein)
          Length = 2156

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = -1

Query: 550  VHKGSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTDKS-- 377
            V+K  SP    N S+T   SDG+  D     +   LGE  +    D  F+D+    K   
Sbjct: 1264 VNKAYSPKETCNPSDTFFPSDGYGVDQTSMNKACFLGE--VCSLTDTVFSDKACAQKENH 1321

Query: 376  SADAILPASKQKGKEDICSTVSDINGQHGLEGD 278
            + +   P  +     ++C+T+  +N +     D
Sbjct: 1322 TYEGACPIDETYVPVNVCNTIDFLNSKENTYTD 1354

>EFG_LEPIN (Q8F983) Elongation factor G (EF-G)|
          Length = 706

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = -1

Query: 562 IKKKVHKGSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTD 383
           I K    G++P R+I Q +  L  +       + L N   G  DLV  +   F  + G D
Sbjct: 144 INKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGIVDLVTMKAYYFEGKDGMD 203

Query: 382 ---KSSADAILPASKQKGKE--DICSTVSDINGQHGLEG 281
              K   D +   +++K +E  D  S  SD   +  LEG
Sbjct: 204 IQEKEIPDDLKELAQKKHEELLDAASMFSDELTEALLEG 242

>EFG_LEPIC (Q72VM5) Elongation factor G (EF-G)|
          Length = 706

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = -1

Query: 562 IKKKVHKGSSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTD 383
           I K    G++P R+I Q +  L  +       + L N   G  DLV  +   F  + G D
Sbjct: 144 INKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGIVDLVTMKAYYFEGKDGMD 203

Query: 382 ---KSSADAILPASKQKGKE--DICSTVSDINGQHGLEG 281
              K   D +   +++K +E  D  S  SD   +  LEG
Sbjct: 204 IQEKEIPDDLKELAQKKHEELLDAASMFSDELTEALLEG 242

>DHQA_NEUCR (P11635) Quinate dehydrogenase (EC 1.1.1.24)|
          Length = 321

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 385 DKSSADAILPASKQKGKEDICSTVSDINGQHGLEGDGA 272
           DKS  DA++    ++G  D    V+ +    GLEG GA
Sbjct: 196 DKSEVDAVIAECTERGYGDRLVHVASVEQAEGLEGPGA 233

>SEMG1_SAGOE (O77733) Semenogelin-1 precursor (Semenogelin I) (SGI)|
          Length = 615

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -1

Query: 538 SSPDRIINQSETGLDSDGFK----HDTEVRLRNASLGEADLVIQEDQKFADETGTDKSSA 371
           S+ +R  N  E G+  D  K    + TE ++ + S  +     QED   A++T +  S  
Sbjct: 282 STEERRPNHGEKGIQKDASKGSTSNQTEDKMHDKSQKQVTTPSQEDGHRANKTSSQSSGT 341

Query: 370 DAILPASKQKGKEDICSTVSDIN 302
           +   P   +KG +   S  S  N
Sbjct: 342 EERRPNHGEKGIQKDASKGSTSN 364

>Y7627_RHOBA (Q7UNE3) UPF0144 protein RB7627|
          Length = 522

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 538 SSPDRIINQSETGLDSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETG--TDKSSADA 365
           +S    + +++ GL+S   +   ++R       E D ++QE Q+  ++    T + +A+ 
Sbjct: 101 ASGQESLRKAQRGLESSQTRLAAQMRNLTEQRAELDRLVQESQRALEKVSGMTQEEAAEK 160

Query: 364 ILPASKQKGKEDICSTV 314
           ++ + +Q  + +I STV
Sbjct: 161 LMQSLRQDLEHEIGSTV 177

>ABTAP_HUMAN (Q9H501) ABT1-associated protein|
          Length = 851

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -1

Query: 496 DSDGFKHDTEVRLRNASLGEADLVIQEDQKFADETGTDKSSADAILPASKQKGKED 329
           DSDG+++ T+  + +         ++ED +   E G+D+ S + I    +  G +D
Sbjct: 221 DSDGYENSTDGEMCDKD------ALEEDSESVSEIGSDEESENEITSVGRASGDDD 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,088,031
Number of Sequences: 219361
Number of extensions: 1539928
Number of successful extensions: 4339
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4334
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)