ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549810.1| Oryza sativa (japonica cultivar-group), mRNA 105 2e-19
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
3dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4dbj|AK122118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
5dbj|AK103820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
6dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
7dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
8gb|BT016224.1| Zea mays clone Contig57 mRNA sequence 101 3e-18
9dbj|AK099952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
10gb|AY109400.1| Zea mays CL1052_1 mRNA sequence 84 6e-13
11emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G... 46 0.13
12emb|AL009196.1|DMC25E8 Drosophila melanogaster cosmid clone 25E8 44 0.52
13gb|AC124716.4| Mus musculus BAC clone RP24-144K17 from chromosom... 42 2.0
14gb|AC126795.4| Mus musculus BAC clone RP24-576D17 from chromosom... 42 2.0
15emb|BX324182.13| Zebrafish DNA sequence from clone CH211-207F21 ... 42 2.0
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
18dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
19emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chrom... 42 2.0
20gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosom... 40 8.1
21gb|AC124987.9| Mus musculus chromosome 3, clone RP24-364E17, com... 40 8.1
22gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosom... 40 8.1
23gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, com... 40 8.1
24emb|AL590803.10| Human DNA sequence from clone RP11-114C3 on chr... 40 8.1
25emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 ... 40 8.1
26gb|AC055740.17| Homo sapiens 3 BAC RP11-239J2 (Roswell Park Canc... 40 8.1
27gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 40 8.1
28gb|AF355473.1|AF355473 Oryzias latipes germ cell-less protein (g... 40 8.1
29gb|AC084468.1|AC084468 Caenorhabditis briggsae cosmid CB044J14, ... 40 8.1
30emb|BX119955.10| Mouse DNA sequence from clone RP23-359O12 on ch... 40 8.1
31gb|DQ020489.1| Sus scrofa clone BAC KNP_992H3, complete sequence 40 8.1
32gb|DQ020486.1| Sus scrofa clone BAC KNP_290F2, complete sequence 40 8.1
33emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 ... 40 8.1
34gb|U95378.1|SSU95378 Sus scrofa domestica lactate dehydrogenase-... 40 8.1
35gb|AC115021.15| Mus musculus chromosome 3, clone RP24-232N19, co... 40 8.1
36gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, comple... 40 8.1
37gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complet... 40 8.1
38gb|AC090503.12| Homo sapiens 12q BAC RP11-314D7 (Roswell Park Ca... 40 8.1 
>ref|XM_549810.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3709

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                        
Query: 59   tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
            |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 3216 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 3159

                                                                        
Query: 119  atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
            |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 3158 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 3099



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 233  ctggttaatatcacatgtcagactcttcagtgccc 267
            ||||||||||||| ||  |||||||||||||||||
Sbjct: 3028 ctggttaatatcatatagcagactcttcagtgccc 2994
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             complete sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                         
Query: 59    tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
             |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 76206 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 76149

                                                                         
Query: 119   atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
             |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 76148 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 76089



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 233   ctggttaatatcacatgtcagactcttcagtgccc 267
             ||||||||||||| ||  |||||||||||||||||
Sbjct: 76018 ctggttaatatcatatagcagactcttcagtgccc 75984
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>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672D08
          Length = 173729

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                         
Query: 59    tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
             |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 74008 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 73951

                                                                         
Query: 119   atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
             |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 73950 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 73891



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 233   ctggttaatatcacatgtcagactcttcagtgccc 267
             ||||||||||||| ||  |||||||||||||||||
Sbjct: 73820 ctggttaatatcatatagcagactcttcagtgccc 73786
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>dbj|AK122118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128C08, full
            insert sequence
          Length = 3706

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                        
Query: 59   tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
            |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 3216 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 3159

                                                                        
Query: 119  atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
            |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 3158 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 3099



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 233  ctggttaatatcacatgtcagactcttcagtgccc 267
            ||||||||||||| ||  |||||||||||||||||
Sbjct: 3028 ctggttaatatcatatagcagactcttcagtgccc 2994
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>dbj|AK103820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147H07, full
            insert sequence
          Length = 1760

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                        
Query: 59   tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
            |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 1267 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 1210

                                                                        
Query: 119  atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
            |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 1209 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 1150



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 233  ctggttaatatcacatgtcagactcttcagtgccc 267
            ||||||||||||| ||  |||||||||||||||||
Sbjct: 1079 ctggttaatatcatatagcagactcttcagtgccc 1045
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>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0455C04
          Length = 147940

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                         
Query: 59    tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
             |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 24752 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 24695

                                                                         
Query: 119   atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
             |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 24694 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 24635



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 233   ctggttaatatcacatgtcagactcttcagtgccc 267
             ||||||||||||| ||  |||||||||||||||||
Sbjct: 24564 ctggttaatatcatatagcagactcttcagtgccc 24530
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>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0402A09
          Length = 141966

 Score =  105 bits (53), Expect = 2e-19
 Identities = 105/120 (87%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                         
Query: 59    tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118
             |||||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||
Sbjct: 61136 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 61079

                                                                         
Query: 119   atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
             |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 61078 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 61019



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 233   ctggttaatatcacatgtcagactcttcagtgccc 267
             ||||||||||||| ||  |||||||||||||||||
Sbjct: 60948 ctggttaatatcatatagcagactcttcagtgccc 60914
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>gb|BT016224.1| Zea mays clone Contig57 mRNA sequence
          Length = 1383

 Score =  101 bits (51), Expect = 3e-18
 Identities = 113/131 (86%), Gaps = 2/131 (1%)
 Strand = Plus / Minus

                                                                        
Query: 45   aagttaacgaggaatacatttttatagatcagatgaacactctggtcgacactgaagctc 104
            ||||||| |||||||||||||| ||| ||||||||| ||||| |  |  |||| ||| ||
Sbjct: 1141 aagttaatgaggaatacattttaatatatcagatgagcactccgaacagcactcaagttc 1082

                                                                        
Query: 105  tccaaaagatcttcatatcctgcaaataaaactcctaaatcag-agaggagataacaaac 163
            |||  |||||||||||  ||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 1081 tcc-gaagatcttcatgccctgcaaataaaactcctaaatcagaaaaggagataataaac 1023

                       
Query: 164  accagttcagc 174
            |||||||||||
Sbjct: 1022 accagttcagc 1012
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>dbj|AK099952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J12, full
            insert sequence
          Length = 4240

 Score =  101 bits (51), Expect = 3e-18
 Identities = 103/118 (87%), Gaps = 3/118 (2%)
 Strand = Plus / Minus

                                                                        
Query: 61   catttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttcat 120
            |||||||||||||||||||||||||  | ||  |||| ||| ||||||   | |||||||
Sbjct: 3221 catttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttcat 3164

                                                                      
Query: 121  atcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177
            |||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct: 3163 atcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 3106



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 233  ctggttaatatcacatgtcagactcttcagtgccc 267
            ||||||||||||| ||  |||||||||||||||||
Sbjct: 3035 ctggttaatatcatatagcagactcttcagtgccc 3001
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>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence
          Length = 2031

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 110  aagatcttcatatcctgcaaataaaactcctaaatcagaga-ggagataacaaacaccag 168
            |||||||||||  |||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct: 1747 aagatcttcatgccctgcaaataaaactcctaaatcagaaagggagataataaacaccag 1688

                  
Query: 169  ttcagc 174
            ||||||
Sbjct: 1687 ttcagc 1682
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>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13
             Contains the C20orf96 gene, the C20orf99 gene, a novel
             gene, the SOX12 gene for SRY (sex-determining region
             Y)-box 12, the C20orf98 gene for chromosome 20 open
             reading frame 98 (similar to mouse VMP, FLJ23329), the
             C20orf97 gene for a novel kinase domain-containing protein
             similar to phosphoprotein C8FW and rat NIPK, the gene for
             a novel defensin protein (DEFB32, UNQ827, KFLL827) and
             five CpG islands, complete sequence
          Length = 153170

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 541   ccttatgaactttcttttttatc 563
             |||||||||||||||||||||||
Sbjct: 94598 ccttatgaactttcttttttatc 94576
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>emb|AL009196.1|DMC25E8 Drosophila melanogaster cosmid clone 25E8
          Length = 33246

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 143   atcagagaggagataacaaaca 164
             ||||||||||||||||||||||
Sbjct: 27403 atcagagaggagataacaaaca 27382
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>gb|AC124716.4| Mus musculus BAC clone RP24-144K17 from chromosome 19, complete sequence
          Length = 194362

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    agcagatatcttccttgcctt 342
              |||||||||||||||||||||
Sbjct: 161694 agcagatatcttccttgcctt 161714
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>gb|AC126795.4| Mus musculus BAC clone RP24-576D17 from chromosome 19, complete sequence
          Length = 183031

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 322    agcagatatcttccttgcctt 342
              |||||||||||||||||||||
Sbjct: 169613 agcagatatcttccttgcctt 169593
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>emb|BX324182.13| Zebrafish DNA sequence from clone CH211-207F21 in linkage group 19,
             complete sequence
          Length = 132675

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    ggaatacatttttatagatcagatg 79
             |||||||| ||||||||||||||||
Sbjct: 16598 ggaatacaattttatagatcagatg 16622
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 548      aactttcttttttatctgaag 568
                |||||||||||||||||||||
Sbjct: 26318324 aactttcttttttatctgaag 26318304
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 548   aactttcttttttatctgaag 568
             |||||||||||||||||||||
Sbjct: 92952 aactttcttttttatctgaag 92932
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>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1332_C12
          Length = 67349

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 548   aactttcttttttatctgaag 568
             |||||||||||||||||||||
Sbjct: 37902 aactttcttttttatctgaag 37882
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>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete
             sequence
          Length = 235366

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 242   atcacatgtcagactcttcag 262
             |||||||||||||||||||||
Sbjct: 57310 atcacatgtcagactcttcag 57330
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>gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosome 8, complete sequence
          Length = 222950

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    tagagcagatatcttccttg 338
              ||||||||||||||||||||
Sbjct: 209203 tagagcagatatcttccttg 209222
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>gb|AC124987.9| Mus musculus chromosome 3, clone RP24-364E17, complete sequence
          Length = 165330

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gaggaatacatttttataga 72
              ||||||||||||||||||||
Sbjct: 114157 gaggaatacatttttataga 114138
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>gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosome 3, complete
            sequence
          Length = 187545

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  tatcctgcaaataaaactcc 139
            ||||||||||||||||||||
Sbjct: 9833 tatcctgcaaataaaactcc 9852
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>gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, complete sequence
          Length = 199554

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 331    cttccttgcctttctgctttgatg 354
              ||||| ||||||||||||||||||
Sbjct: 193646 cttccgtgcctttctgctttgatg 193623
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>emb|AL590803.10| Human DNA sequence from clone RP11-114C3 on chromosome 13, complete
             sequence
          Length = 25375

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    catttttatagatcagatga 80
             ||||||||||||||||||||
Sbjct: 19923 catttttatagatcagatga 19904
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>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21,
             complete sequence
          Length = 205143

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 251   cagactcttcagtgccccttaagc 274
             |||| |||||||||||||||||||
Sbjct: 70482 cagattcttcagtgccccttaagc 70505
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>gb|AC055740.17| Homo sapiens 3 BAC RP11-239J2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147634

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   atcttccttgcctttctgct 348
             ||||||||||||||||||||
Sbjct: 77621 atcttccttgcctttctgct 77602
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 558    tttatctgaagacagtggat 577
              ||||||||||||||||||||
Sbjct: 266935 tttatctgaagacagtggat 266954
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>gb|AF355473.1|AF355473 Oryzias latipes germ cell-less protein (gcl) mRNA, complete cds
          Length = 3774

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  tcgacactgaagctctccaa 109
           ||||||||||||||||||||
Sbjct: 715 tcgacactgaagctctccaa 734
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>gb|AC084468.1|AC084468 Caenorhabditis briggsae cosmid CB044J14, complete sequence
          Length = 104125

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 375  gaggatttatctgtaccagt 394
            ||||||||||||||||||||
Sbjct: 7682 gaggatttatctgtaccagt 7663
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>emb|BX119955.10| Mouse DNA sequence from clone RP23-359O12 on chromosome X, complete
             sequence
          Length = 119778

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   tcctaaatcagagaggagat 156
             ||||||||||||||||||||
Sbjct: 60452 tcctaaatcagagaggagat 60433
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>gb|DQ020489.1| Sus scrofa clone BAC KNP_992H3, complete sequence
          Length = 121023

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    agaggagataacaaacacca 167
              ||||||||||||||||||||
Sbjct: 119437 agaggagataacaaacacca 119418
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>gb|DQ020486.1| Sus scrofa clone BAC KNP_290F2, complete sequence
          Length = 123277

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  agaggagataacaaacacca 167
            ||||||||||||||||||||
Sbjct: 4703 agaggagataacaaacacca 4684
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>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20,
              complete sequence
          Length = 159094

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 251    cagactcttcagtgccccttaagc 274
              |||| |||||||||||||||||||
Sbjct: 113812 cagattcttcagtgccccttaagc 113789
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>gb|U95378.1|SSU95378 Sus scrofa domestica lactate dehydrogenase-C (LDH-C) mRNA, complete
            cds
          Length = 1267

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   atttttatagatcagatgaa 81
            ||||||||||||||||||||
Sbjct: 1227 atttttatagatcagatgaa 1208
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>gb|AC115021.15| Mus musculus chromosome 3, clone RP24-232N19, complete sequence
          Length = 168461

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 331   cttccttgcctttctgctttgatg 354
             ||||| ||||||||||||||||||
Sbjct: 82167 cttccgtgcctttctgctttgatg 82144
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>gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, complete sequence
          Length = 178779

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 319  tagagcagatatcttccttg 338
            ||||||||||||||||||||
Sbjct: 9117 tagagcagatatcttccttg 9136
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>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence
          Length = 135567

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tatcctgcaaataaaactcc 139
             ||||||||||||||||||||
Sbjct: 84098 tatcctgcaaataaaactcc 84117
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>gb|AC090503.12| Homo sapiens 12q BAC RP11-314D7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 221074

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    gaatacatttttatagatca 75
             ||||||||||||||||||||
Sbjct: 76804 gaatacatttttatagatca 76785


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,681,314
Number of Sequences: 3902068
Number of extensions: 6681314
Number of successful extensions: 127745
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127559
Number of HSP's gapped (non-prelim): 176
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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