Clone Name | rbah61j15 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_549810.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3709 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 3216 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 3159 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 3158 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 3099 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 3028 ctggttaatatcatatagcagactcttcagtgccc 2994
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 76206 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 76149 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 76148 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 76089 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 76018 ctggttaatatcatatagcagactcttcagtgccc 75984
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 74008 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 73951 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 73950 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 73891 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 73820 ctggttaatatcatatagcagactcttcagtgccc 73786
>dbj|AK122118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128C08, full insert sequence Length = 3706 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 3216 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 3159 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 3158 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 3099 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 3028 ctggttaatatcatatagcagactcttcagtgccc 2994
>dbj|AK103820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147H07, full insert sequence Length = 1760 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 1267 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 1210 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 1209 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 1150 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 1079 ctggttaatatcatatagcagactcttcagtgccc 1045
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 24752 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 24695 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 24694 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 24635 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 24564 ctggttaatatcatatagcagactcttcagtgccc 24530
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 105 bits (53), Expect = 2e-19 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 59 tacatttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttc 118 ||||||||||||||||||||||||||| | || |||| ||| |||||| | ||||| Sbjct: 61136 tacatttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttc 61079 Query: 119 atatcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 61078 atatcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 61019 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 60948 ctggttaatatcatatagcagactcttcagtgccc 60914
>gb|BT016224.1| Zea mays clone Contig57 mRNA sequence Length = 1383 Score = 101 bits (51), Expect = 3e-18 Identities = 113/131 (86%), Gaps = 2/131 (1%) Strand = Plus / Minus Query: 45 aagttaacgaggaatacatttttatagatcagatgaacactctggtcgacactgaagctc 104 ||||||| |||||||||||||| ||| ||||||||| ||||| | | |||| ||| || Sbjct: 1141 aagttaatgaggaatacattttaatatatcagatgagcactccgaacagcactcaagttc 1082 Query: 105 tccaaaagatcttcatatcctgcaaataaaactcctaaatcag-agaggagataacaaac 163 ||| ||||||||||| ||||||||||||||||||||||||| | ||||||||| |||| Sbjct: 1081 tcc-gaagatcttcatgccctgcaaataaaactcctaaatcagaaaaggagataataaac 1023 Query: 164 accagttcagc 174 ||||||||||| Sbjct: 1022 accagttcagc 1012
>dbj|AK099952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J12, full insert sequence Length = 4240 Score = 101 bits (51), Expect = 3e-18 Identities = 103/118 (87%), Gaps = 3/118 (2%) Strand = Plus / Minus Query: 61 catttttatagatcagatgaacactctggtcgacactgaagctctccaaaagatcttcat 120 ||||||||||||||||||||||||| | || |||| ||| |||||| | ||||||| Sbjct: 3221 catttttatagatcagatgaacacttcgatcagcactcaagttctccat--gttcttcat 3164 Query: 121 atcctgcaaataaaactcctaaatcagagagg-agataacaaacaccagttcagctat 177 |||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct: 3163 atcctgcaaataaaactcctaaatcagaaaggaagataacaaacaccaattcatctat 3106 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 ctggttaatatcacatgtcagactcttcagtgccc 267 ||||||||||||| || ||||||||||||||||| Sbjct: 3035 ctggttaatatcatatagcagactcttcagtgccc 3001
>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence Length = 2031 Score = 83.8 bits (42), Expect = 6e-13 Identities = 61/66 (92%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 110 aagatcttcatatcctgcaaataaaactcctaaatcagaga-ggagataacaaacaccag 168 ||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||| Sbjct: 1747 aagatcttcatgccctgcaaataaaactcctaaatcagaaagggagataataaacaccag 1688 Query: 169 ttcagc 174 |||||| Sbjct: 1687 ttcagc 1682
>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13 Contains the C20orf96 gene, the C20orf99 gene, a novel gene, the SOX12 gene for SRY (sex-determining region Y)-box 12, the C20orf98 gene for chromosome 20 open reading frame 98 (similar to mouse VMP, FLJ23329), the C20orf97 gene for a novel kinase domain-containing protein similar to phosphoprotein C8FW and rat NIPK, the gene for a novel defensin protein (DEFB32, UNQ827, KFLL827) and five CpG islands, complete sequence Length = 153170 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 541 ccttatgaactttcttttttatc 563 ||||||||||||||||||||||| Sbjct: 94598 ccttatgaactttcttttttatc 94576
>emb|AL009196.1|DMC25E8 Drosophila melanogaster cosmid clone 25E8 Length = 33246 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 143 atcagagaggagataacaaaca 164 |||||||||||||||||||||| Sbjct: 27403 atcagagaggagataacaaaca 27382
>gb|AC124716.4| Mus musculus BAC clone RP24-144K17 from chromosome 19, complete sequence Length = 194362 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 agcagatatcttccttgcctt 342 ||||||||||||||||||||| Sbjct: 161694 agcagatatcttccttgcctt 161714
>gb|AC126795.4| Mus musculus BAC clone RP24-576D17 from chromosome 19, complete sequence Length = 183031 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 agcagatatcttccttgcctt 342 ||||||||||||||||||||| Sbjct: 169613 agcagatatcttccttgcctt 169593
>emb|BX324182.13| Zebrafish DNA sequence from clone CH211-207F21 in linkage group 19, complete sequence Length = 132675 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 ggaatacatttttatagatcagatg 79 |||||||| |||||||||||||||| Sbjct: 16598 ggaatacaattttatagatcagatg 16622
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 aactttcttttttatctgaag 568 ||||||||||||||||||||| Sbjct: 26318324 aactttcttttttatctgaag 26318304
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 aactttcttttttatctgaag 568 ||||||||||||||||||||| Sbjct: 92952 aactttcttttttatctgaag 92932
>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1332_C12 Length = 67349 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 aactttcttttttatctgaag 568 ||||||||||||||||||||| Sbjct: 37902 aactttcttttttatctgaag 37882
>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete sequence Length = 235366 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 atcacatgtcagactcttcag 262 ||||||||||||||||||||| Sbjct: 57310 atcacatgtcagactcttcag 57330
>gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosome 8, complete sequence Length = 222950 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tagagcagatatcttccttg 338 |||||||||||||||||||| Sbjct: 209203 tagagcagatatcttccttg 209222
>gb|AC124987.9| Mus musculus chromosome 3, clone RP24-364E17, complete sequence Length = 165330 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gaggaatacatttttataga 72 |||||||||||||||||||| Sbjct: 114157 gaggaatacatttttataga 114138
>gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosome 3, complete sequence Length = 187545 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tatcctgcaaataaaactcc 139 |||||||||||||||||||| Sbjct: 9833 tatcctgcaaataaaactcc 9852
>gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, complete sequence Length = 199554 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cttccttgcctttctgctttgatg 354 ||||| |||||||||||||||||| Sbjct: 193646 cttccgtgcctttctgctttgatg 193623
>emb|AL590803.10| Human DNA sequence from clone RP11-114C3 on chromosome 13, complete sequence Length = 25375 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 catttttatagatcagatga 80 |||||||||||||||||||| Sbjct: 19923 catttttatagatcagatga 19904
>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21, complete sequence Length = 205143 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 cagactcttcagtgccccttaagc 274 |||| ||||||||||||||||||| Sbjct: 70482 cagattcttcagtgccccttaagc 70505
>gb|AC055740.17| Homo sapiens 3 BAC RP11-239J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147634 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 atcttccttgcctttctgct 348 |||||||||||||||||||| Sbjct: 77621 atcttccttgcctttctgct 77602
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tttatctgaagacagtggat 577 |||||||||||||||||||| Sbjct: 266935 tttatctgaagacagtggat 266954
>gb|AF355473.1|AF355473 Oryzias latipes germ cell-less protein (gcl) mRNA, complete cds Length = 3774 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tcgacactgaagctctccaa 109 |||||||||||||||||||| Sbjct: 715 tcgacactgaagctctccaa 734
>gb|AC084468.1|AC084468 Caenorhabditis briggsae cosmid CB044J14, complete sequence Length = 104125 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gaggatttatctgtaccagt 394 |||||||||||||||||||| Sbjct: 7682 gaggatttatctgtaccagt 7663
>emb|BX119955.10| Mouse DNA sequence from clone RP23-359O12 on chromosome X, complete sequence Length = 119778 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 tcctaaatcagagaggagat 156 |||||||||||||||||||| Sbjct: 60452 tcctaaatcagagaggagat 60433
>gb|DQ020489.1| Sus scrofa clone BAC KNP_992H3, complete sequence Length = 121023 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agaggagataacaaacacca 167 |||||||||||||||||||| Sbjct: 119437 agaggagataacaaacacca 119418
>gb|DQ020486.1| Sus scrofa clone BAC KNP_290F2, complete sequence Length = 123277 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agaggagataacaaacacca 167 |||||||||||||||||||| Sbjct: 4703 agaggagataacaaacacca 4684
>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20, complete sequence Length = 159094 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 cagactcttcagtgccccttaagc 274 |||| ||||||||||||||||||| Sbjct: 113812 cagattcttcagtgccccttaagc 113789
>gb|U95378.1|SSU95378 Sus scrofa domestica lactate dehydrogenase-C (LDH-C) mRNA, complete cds Length = 1267 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 atttttatagatcagatgaa 81 |||||||||||||||||||| Sbjct: 1227 atttttatagatcagatgaa 1208
>gb|AC115021.15| Mus musculus chromosome 3, clone RP24-232N19, complete sequence Length = 168461 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cttccttgcctttctgctttgatg 354 ||||| |||||||||||||||||| Sbjct: 82167 cttccgtgcctttctgctttgatg 82144
>gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, complete sequence Length = 178779 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tagagcagatatcttccttg 338 |||||||||||||||||||| Sbjct: 9117 tagagcagatatcttccttg 9136
>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence Length = 135567 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tatcctgcaaataaaactcc 139 |||||||||||||||||||| Sbjct: 84098 tatcctgcaaataaaactcc 84117
>gb|AC090503.12| Homo sapiens 12q BAC RP11-314D7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 221074 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gaatacatttttatagatca 75 |||||||||||||||||||| Sbjct: 76804 gaatacatttttatagatca 76785 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,681,314 Number of Sequences: 3902068 Number of extensions: 6681314 Number of successful extensions: 127745 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127559 Number of HSP's gapped (non-prelim): 176 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)