Clone Name | rbah61j12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | RS19_PYRKO (Q5JDH3) 30S ribosomal protein S19P | 30 | 4.0 | 2 | SYC_HALMA (Q5V2M3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... | 28 | 8.9 |
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>RS19_PYRKO (Q5JDH3) 30S ribosomal protein S19P| Length = 133 Score = 29.6 bits (65), Expect = 4.0 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +3 Query: 243 F*PLEVKAKALGHETDDLIVGHKIIQHGN 329 F P+E+K + +GH + + K++QHG+ Sbjct: 90 FVPVEIKEEMIGHYLGEFAMTRKVVQHGS 118
>SYC_HALMA (Q5V2M3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 492 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 2/15 (13%) Frame = +1 Query: 424 THDPPHIGHA--WVH 462 T DPPH+GHA WVH Sbjct: 33 TSDPPHLGHARGWVH 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,411,030 Number of Sequences: 219361 Number of extensions: 1221607 Number of successful extensions: 2596 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2557 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2596 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)