Clone Name | rbah61j12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197188.1| Oryza sativa (japonica cultivar-group) putative glycine-rich protein (OSJNBa0078O01.2), mRNA Length = 3876 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 418 actttcacccatgacccaccacacattggacatgcttgggtcca 461 ||||||||||||| |||||| |||||||| || || |||||||| Sbjct: 3869 actttcacccatgtcccaccgcacattgggcaagcatgggtcca 3826
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 418 actttcacccatgacccaccacacattggacatgcttgggtcca 461 ||||||||||||| |||||| |||||||| || || |||||||| Sbjct: 12035 actttcacccatgtcccaccgcacattgggcaagcatgggtcca 11992
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 418 actttcacccatgacccaccacacattggacatgcttgggtcca 461 ||||||||||||| |||||| |||||||| || || |||||||| Sbjct: 18509024 actttcacccatgtcccaccgcacattgggcaagcatgggtcca 18508981
>dbj|AK102105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084D07, full insert sequence Length = 2637 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 418 actttcacccatgacccaccacacattggacatgcttgggtcca 461 ||||||||||||| |||||| |||||||| || || |||||||| Sbjct: 2264 actttcacccatgtcccaccgcacattgggcaagcatgggtcca 2221
>dbj|AK101061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022G24, full insert sequence Length = 4540 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 418 actttcacccatgacccaccacacattggacatgcttgggtcca 461 ||||||||||||| |||||| |||||||| || || |||||||| Sbjct: 4167 actttcacccatgtcccaccgcacattgggcaagcatgggtcca 4124
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 418 actttcacccatgacccaccacacattggacatgcttgggtcca 461 ||||||||||||| |||||| |||||||| || || |||||||| Sbjct: 18519077 actttcacccatgtcccaccgcacattgggcaagcatgggtcca 18519034
>ref|NM_017360.1| Rattus norvegicus coilin (Coil), mRNA Length = 2580 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 262 aagccaaagcgctggggcatgagactgatga 292 ||||||||||||||| | ||||||||||||| Sbjct: 152 aagccaaagcgctggcggatgagactgatga 122
>gb|AF399643.1|AF399643 Rattus norvegicus p80 coilin mRNA, complete cds Length = 2580 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 262 aagccaaagcgctggggcatgagactgatga 292 ||||||||||||||| | ||||||||||||| Sbjct: 152 aagccaaagcgctggcggatgagactgatga 122
>gb|AF220424.1|AF220424 Rattus norvegicus coilin p80 mRNA, partial cds Length = 1324 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 262 aagccaaagcgctggggcatgagactgatga 292 ||||||||||||||| | ||||||||||||| Sbjct: 152 aagccaaagcgctggcggatgagactgatga 122
>dbj|AK141731.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030046N05 product:mitochondrial ribosomal protein L13, full insert sequence Length = 6011 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 gcaatatgtgtatctaacagct 118 |||||||||||||||||||||| Sbjct: 2561 gcaatatgtgtatctaacagct 2582
>emb|BX005044.9| Zebrafish DNA sequence from clone DKEY-7L6 in linkage group 2, complete sequence Length = 174623 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 atagctgaactacctaaagatg 44 |||||||||||||||||||||| Sbjct: 63803 atagctgaactacctaaagatg 63824
>gb|AC123682.13| Mus musculus chromosome 15, clone RP23-288J22, complete sequence Length = 170303 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 gcaatatgtgtatctaacagct 118 |||||||||||||||||||||| Sbjct: 125966 gcaatatgtgtatctaacagct 125987
>gb|AC008661.6| Homo sapiens chromosome 5 clone CTB-28J9, complete sequence Length = 188548 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 tggccaagcagcaactactat 370 ||||||||||||||||||||| Sbjct: 89919 tggccaagcagcaactactat 89899
>emb|BX323031.7| Zebrafish DNA sequence from clone DKEYP-7B3 in linkage group 18, complete sequence Length = 164748 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 aaaatagctgaactacctaaa 40 ||||||||||||||||||||| Sbjct: 66150 aaaatagctgaactacctaaa 66130
>gb|U23169.2| Caenorhabditis elegans cosmid C29H12, complete sequence Length = 46535 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gagtttatttttataaaata 25 |||||||||||||||||||| Sbjct: 26641 gagtttatttttataaaata 26622
>ref|NM_206827.1| Homo sapiens RAS-like, family 11, member A (RASL11A), mRNA Length = 1543 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cagagtttatttttataaaa 23 |||||||||||||||||||| Sbjct: 1431 cagagtttatttttataaaa 1450
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 aactactatagaagaattag 381 |||||||||||||||||||| Sbjct: 800081 aactactatagaagaattag 800100
>gb|AY439004.1| Homo sapiens Ras-like family 11 member A (RASL11A) mRNA, complete cds Length = 1543 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cagagtttatttttataaaa 23 |||||||||||||||||||| Sbjct: 1431 cagagtttatttttataaaa 1450
>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence Length = 186572 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gtttatttttataaaatagc 27 |||||||||||||||||||| Sbjct: 76413 gtttatttttataaaatagc 76432
>emb|AL161894.12| Human DNA sequence from clone RP11-23B16 on chromosome 13, complete sequence Length = 106083 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 attgtgatacatttatacac 148 |||||||||||||||||||| Sbjct: 49912 attgtgatacatttatacac 49893
>emb|AL159977.10| Human DNA sequence from clone RP11-428O18 on chromosome 13 Contains the RPL21 gene for ribosomal protein L21 (60S ribosomal protein L21, L21), a novel gene for a Ras family protein similar to 1110065D03RIK, a novel gene, the 5' end of novel gene and two CpG islands, complete sequence Length = 173965 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cagagtttatttttataaaa 23 |||||||||||||||||||| Sbjct: 100344 cagagtttatttttataaaa 100363
>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3 Contains the 3' end of gene for plasticity related gene 1 (PRG), complete sequence Length = 68858 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 cacccatgacccaccacacattgg 446 |||||||||| ||||||||||||| Sbjct: 64440 cacccatgacacaccacacattgg 64463
>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7/17 Length = 348813 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 207 agccgttagagccaagtctcagtatctgcttt 238 ||||| ||||||||||| || ||||||||||| Sbjct: 5574 agccgatagagccaagtatccgtatctgcttt 5605
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 agcatggtgaagtggtcacg 399 |||||||||||||||||||| Sbjct: 2419289 agcatggtgaagtggtcacg 2419270
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aactacctaaagatgagggg 49 |||||||||||||||||||| Sbjct: 789289 aactacctaaagatgagggg 789308
>gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161874 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gtttatttttataaaatagc 27 |||||||||||||||||||| Sbjct: 20564 gtttatttttataaaatagc 20583
>gb|AC025460.7| Homo sapiens chromosome 5 clone CTD-2235E24, complete sequence Length = 214636 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 atagaagaattagcatggtg 388 |||||||||||||||||||| Sbjct: 157940 atagaagaattagcatggtg 157959
>gb|AE008502.1|AE008502 Streptococcus pneumoniae R6 section 118 of 184 of the complete genome Length = 10852 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 caaaattatccaacatggta 327 |||||||||||||||||||| Sbjct: 10604 caaaattatccaacatggta 10623
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tgcaaacattgccatctccc 183 |||||||||||||||||||| Sbjct: 38733224 tgcaaacattgccatctccc 38733205
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tgcaaacattgccatctccc 183 |||||||||||||||||||| Sbjct: 6106 tgcaaacattgccatctccc 6087
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 caaaattatccaacatggta 327 |||||||||||||||||||| Sbjct: 1382837 caaaattatccaacatggta 1382856
>gb|AF214529.1|AF214528S2 Homo sapiens dystrophin (DMD) gene, intron 51, partial sequence Length = 19340 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gtttatttttataaaatagc 27 |||||||||||||||||||| Sbjct: 6817 gtttatttttataaaatagc 6798
>gb|AF014458.2|AF014458 Streptococcus pneumoniae NADH oxidase gene, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caaaattatccaacatggta 327 |||||||||||||||||||| Sbjct: 73 caaaattatccaacatggta 54
>gb|AY111813.1| Zea mays CL37291_1 mRNA sequence Length = 673 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 404 acagcgatcacacaactttcacccatga 431 |||||| ||| ||||||||||||||||| Sbjct: 350 acagcgctcaaacaactttcacccatga 377
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tttatttttataaaatagct 28 |||||||||||||||||||| Sbjct: 517 tttatttttataaaatagct 536
>emb|CT485784.2| RP43-026J01, complete sequence Length = 201375 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gtttatttttataaaatagc 27 |||||||||||||||||||| Sbjct: 184717 gtttatttttataaaatagc 184736
>emb|AL954333.7| Zebrafish DNA sequence from clone CH211-287M15, complete sequence Length = 160851 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tattactatacttttacata 207 |||||||||||||||||||| Sbjct: 113710 tattactatacttttacata 113729 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,859,440 Number of Sequences: 3902068 Number of extensions: 4859440 Number of successful extensions: 101231 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100999 Number of HSP's gapped (non-prelim): 232 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)