>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (Zinc finger
           C3HC-type protein 1)
          Length = 502

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 562 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFC--GWQLTVDAL 428
           FDP   H ++CPWVN  +      N G+  +++A    GW+  +  L
Sbjct: 419 FDPTSQHRDWCPWVNVTLGKESRENGGTEPDASAPAEPGWKAVLTIL 465

>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (hNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 502

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 562 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFC--GWQLTVDAL 428
           FDP   H ++CPWVN  +      N G+  +++A    GW+  +  L
Sbjct: 419 FDPTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTIL 465

>NIPA_XENTR (Q5M8S7) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 478

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 562 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAF---CGWQLTVDALETVQSLGQNQYQ 392
           FDP+  H ++CPWVN   A+  T   GS     A     GW+  ++ L     L +   +
Sbjct: 391 FDPLSQHRSWCPWVNVCQASE-TSTLGSEIQEEASRKEYGWKEVLNVL-----LAEENSR 444

Query: 391 AMKSDSAASLYKDDH 347
            +     +S+ +  H
Sbjct: 445 TLSDPDTSSVPEKSH 459

>NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 477

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 562 FDPIKHHNNYCPWVNGYVATACTMNTGSS 476
           FDP+  H ++CPWVN  V  A   NT  S
Sbjct: 394 FDPLSQHRSWCPWVN--VCQASGTNTMGS 420

>NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (mNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 501

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 562 FDPIKHHNNYCPWVN 518
           FDP   H ++CPWVN
Sbjct: 418 FDPTSQHRDWCPWVN 432

>FBX42_PONPY (Q5RDA9) F-box only protein 42|
          Length = 717

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 514 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 353
           YV   CT    SS N+A    W+L +++ E ++ L    Y + K+ +   +YKD
Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184

>FBX42_MOUSE (Q6PDJ6) F-box only protein 42|
          Length = 717

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 514 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 353
           YV   CT    SS N+A    W+L +++ E ++ L    Y + K+ +   +YKD
Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184

>FBX42_HUMAN (Q6P3S6) F-box only protein 42|
          Length = 717

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 514 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 353
           YV   CT    SS N+A    W+L +++ E ++ L    Y + K+ +   +YKD
Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184

>Y086_CLOTE (Q899T2) UPF0182 protein CTC_00086|
          Length = 887

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
 Frame = -2

Query: 496 TMNTGSSTNSAAFCGWQLTVDALETVQSLG---QNQYQAMKSDSAASLYKDDHAA----- 341
           TMNT  +TN + +   +L  D LE +  LG     Q   M S  AA +  D++       
Sbjct: 674 TMNTDKATNESPYVFMKLPNDNLEEMILLGYFNMKQRNTMSSMLAARMTSDNYGKLIMYR 733

Query: 340 -PSHKLLKRPKHSKC*LKR 287
            P HK +  P   K  +K+
Sbjct: 734 FPIHKTIYSPYFFKQKIKQ 752


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,701,211
Number of Sequences: 219361
Number of extensions: 1193642
Number of successful extensions: 2885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)