Clone Name | rbah61j09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3250 Score = 131 bits (66), Expect = 3e-27 Identities = 215/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 284 gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 343 |||| |||||| ||| || |||||||| | | |||||||| ||||||| ||||||| || Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856 Query: 344 ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 403 | |||||||||||||| |||||||||||||| |||||| ||| ||||| ||| Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796 Query: 404 ttgaccaagggactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 463 |||| |||| ||||||| ||| || |||||||||||||||||||||||||| ||| | | Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736 Query: 464 tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 523 | |||| ||||||||||||||||| ||| |||||| | ||||||| |||||| || Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679 Query: 524 ccatggacaatagttgttgtgatg 547 |||||| ||||| ||||||||||| Sbjct: 2678 ccatgggcaataattgttgtgatg 2655
>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full insert sequence Length = 3250 Score = 131 bits (66), Expect = 3e-27 Identities = 215/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 284 gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 343 |||| |||||| ||| || |||||||| | | |||||||| ||||||| ||||||| || Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856 Query: 344 ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 403 | |||||||||||||| |||||||||||||| |||||| ||| ||||| ||| Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796 Query: 404 ttgaccaagggactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 463 |||| |||| ||||||| ||| || |||||||||||||||||||||||||| ||| | | Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736 Query: 464 tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 523 | |||| ||||||||||||||||| ||| |||||| | ||||||| |||||| || Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679 Query: 524 ccatggacaatagttgttgtgatg 547 |||||| ||||| ||||||||||| Sbjct: 2678 ccatgggcaataattgttgtgatg 2655
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 101 bits (51), Expect = 2e-18 Identities = 158/193 (81%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 355 ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaaggg 414 ||||||| |||||||||||||| |||||| ||| ||||| ||| |||| |||| | Sbjct: 2667181 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 2667240 Query: 415 actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 474 |||||| ||| || |||||||||||||||||||||||||| ||| | | | |||| | Sbjct: 2667241 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 2667297 Query: 475 tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 534 |||||||||||||||| ||| |||||| | ||||||| |||||| |||||||| |||| Sbjct: 2667298 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 2667357 Query: 535 agttgttgtgatg 547 | ||||||||||| Sbjct: 2667358 aattgttgtgatg 2667370
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 101 bits (51), Expect = 2e-18 Identities = 158/193 (81%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 355 ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaaggg 414 ||||||| |||||||||||||| |||||| ||| ||||| ||| |||| |||| | Sbjct: 92899 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 92958 Query: 415 actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 474 |||||| ||| || |||||||||||||||||||||||||| ||| | | | |||| | Sbjct: 92959 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 93015 Query: 475 tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 534 |||||||||||||||| ||| |||||| | ||||||| |||||| |||||||| |||| Sbjct: 93016 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 93075 Query: 535 agttgttgtgatg 547 | ||||||||||| Sbjct: 93076 aattgttgtgatg 93088
>gb|AY108127.1| Zea mays PCO088339 mRNA sequence Length = 666 Score = 50.1 bits (25), Expect = 0.008 Identities = 109/137 (79%) Strand = Plus / Minus Query: 318 cttttcagcagcttgtggctaggtgcggcgtggtcatccttatatagtgatgccgcagaa 377 |||||||||||||| ||||||| | | |||| || |||||||||| ||| |||||||| Sbjct: 217 cttttcagcagcttccggctaggcgggacgtgatcgtccttatataatgaagccgcagag 158 Query: 378 tcagacttcatggcttgatactggttttgaccaagggactggacagtctcaagtgcatct 437 || |||| ||| | |||| ||| |||||||| ||||| | |||||| | |||||| Sbjct: 157 tctgactgcatcgtctgattttgggcctgaccaagagactgcagagtctcgatggcatct 98 Query: 438 actgtaagctgccagcc 454 || || ||||||||||| Sbjct: 97 accgtgagctgccagcc 81
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaag 99 ||||||||||||||||| |||||||| Sbjct: 1934290 aaaagaaacaacagctatgcaacaag 1934265
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaag 99 ||||||||||||||||| |||||||| Sbjct: 1897377 aaaagaaacaacagctatgcaacaag 1897352
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaag 99 ||||||||||||||||| |||||||| Sbjct: 1897321 aaaagaaacaacagctatgcaacaag 1897296
>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence Length = 252659 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 22 tcagaattttagactcacaaaa 43 |||||||||||||||||||||| Sbjct: 182509 tcagaattttagactcacaaaa 182488
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaag 99 ||||||||||||||||| |||||||| Sbjct: 1955054 aaaagaaacaacagctatgcaacaag 1955029
>emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19 on chromosome 6 Contains part of the PRIM2A gene for primase polypeptide 2A (58kD) and a novel gene, complete sequence Length = 138411 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 tagactcacaaaatcttccaga 52 |||||||||||||||||||||| Sbjct: 73780 tagactcacaaaatcttccaga 73801
>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete sequence Length = 158234 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 tagactcacaaaatcttccaga 52 |||||||||||||||||||||| Sbjct: 31530 tagactcacaaaatcttccaga 31551
>gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chromosome 6, complete sequence Length = 188415 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 31 tagactcacaaaatcttccaga 52 |||||||||||||||||||||| Sbjct: 36612 tagactcacaaaatcttccaga 36591
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaag 99 ||||||||||||||||| |||||||| Sbjct: 1897254 aaaagaaacaacagctatgcaacaag 1897229
>gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome 17, complete sequence Length = 171447 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 atataaacacaataaaagaaa 81 ||||||||||||||||||||| Sbjct: 75101 atataaacacaataaaagaaa 75121
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tatataaacacaataaaagaa 80 ||||||||||||||||||||| Sbjct: 194672 tatataaacacaataaaagaa 194652
>gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complete sequence Length = 197946 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 ttgagctggatccaagtttag 264 ||||||||||||||||||||| Sbjct: 38287 ttgagctggatccaagtttag 38267
>emb|Y11171.1|BC542A B.cereus bc542a gene Length = 2195 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaa 98 ||||||||||||||||| ||||||| Sbjct: 315 aaaagaaacaacagctatgcaacaa 291
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 aaaagaaacaacagctaggcaacaa 98 ||||||||||||||||| ||||||| Sbjct: 2021940 aaaagaaacaacagctatgcaacaa 2021916
>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence Length = 212628 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aatgctgcactatttgtgct 478 |||||||||||||||||||| Sbjct: 120734 aatgctgcactatttgtgct 120753
>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence Length = 197843 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 caacatatccattaacccat 527 |||||||||||||||||||| Sbjct: 175446 caacatatccattaacccat 175427
>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence Length = 182955 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ataaacacaataaaagaaacaaca 86 ||||||| |||||||||||||||| Sbjct: 28965 ataaacataataaaagaaacaaca 28942
>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence Length = 215331 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 atataaacacaataaaagaaacaa 84 ||||||||| |||||||||||||| Sbjct: 63779 atataaacaaaataaaagaaacaa 63756
>ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin isoform B (LOC488593), mRNA Length = 15600 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ttcctcttccgccgcctgct 148 |||||||||||||||||||| Sbjct: 12343 ttcctcttccgccgcctgct 12362
>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence Length = 191104 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aatatataaacacaataaaa 77 |||||||||||||||||||| Sbjct: 107679 aatatataaacacaataaaa 107660
>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence Length = 192581 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ttttggccttttcagcagct 330 |||||||||||||||||||| Sbjct: 132132 ttttggccttttcagcagct 132151
>emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete sequence Length = 24957 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tctacaatctacaatgctta 123 |||||||||||||||||||| Sbjct: 201 tctacaatctacaatgctta 182
>gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complete sequence Length = 108878 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tacattcagaattttagact 36 |||||||||||||||||||| Sbjct: 58720 tacattcagaattttagact 58701
>gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, complete sequence Length = 153260 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tacattcagaattttagact 36 |||||||||||||||||||| Sbjct: 111689 tacattcagaattttagact 111708
>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene for transcription factor AP-2 alpha (activating enhancer-binding protein 2 alpha), four novel genes, a mitochondrial ribosomal protein L47 (MRPL47) pseudogene and 11 CpG islands, complete sequence Length = 180133 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 agcacttgctgtgttttggc 317 |||||||||||||||||||| Sbjct: 9698 agcacttgctgtgttttggc 9717
>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence Length = 134105 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgttttggccttttcagcag 328 |||||||||||||||||||| Sbjct: 20428 tgttttggccttttcagcag 20447
>emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P7 on chromosome Xq25-26.3, complete sequence Length = 103989 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ctggaaccagtattcatagt 496 |||||||||||||||||||| Sbjct: 41570 ctggaaccagtattcatagt 41589
>gb|AC021649.18| Homo sapiens 3 BAC RP11-321F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209521 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 agggactggacagtctcaag 430 |||||||||||||||||||| Sbjct: 28510 agggactggacagtctcaag 28529
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 aatatataaacacaataaaagaaa 81 |||||| ||||||||||||||||| Sbjct: 663290 aatataaaaacacaataaaagaaa 663313
>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete sequence Length = 200690 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tataaacacaataaaagaaa 81 |||||||||||||||||||| Sbjct: 60240 tataaacacaataaaagaaa 60221
>dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720474J21 product:unclassifiable, full insert sequence Length = 2262 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ataaacacaataaaagaaacaaca 86 ||||||| |||||||||||||||| Sbjct: 172 ataaacataataaaagaaacaaca 195
>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence Length = 169479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaacacaataaaagaaacaa 84 |||||||||||||||||||| Sbjct: 150216 aaacacaataaaagaaacaa 150197
>ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-1) (lrs-1) mRNA, complete cds Length = 3733 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 tctacaatctacaatgctta 123 |||||||||||||||||||| Sbjct: 1809 tctacaatctacaatgctta 1828
>gb|AC018904.6|AC018904 Homo sapiens chromosome 15 clone RP11-50C13 map 15q21.3, complete sequence Length = 158091 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tggttttgaccaagggactg 418 |||||||||||||||||||| Sbjct: 5380 tggttttgaccaagggactg 5399
>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence Length = 163823 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tataaacacaataaaagaaa 81 |||||||||||||||||||| Sbjct: 130361 tataaacacaataaaagaaa 130342
>gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, complete sequence Length = 121496 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 atataaacacaataaaagaaacaa 84 |||||||||||| ||||||||||| Sbjct: 114137 atataaacacaagaaaagaaacaa 114160
>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete sequence Length = 173386 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tggttttgaccaagggactg 418 |||||||||||||||||||| Sbjct: 169749 tggttttgaccaagggactg 169768
>gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromosome 7, complete sequence Length = 163009 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tacattcagaattttagact 36 |||||||||||||||||||| Sbjct: 151038 tacattcagaattttagact 151019
>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete sequence Length = 156881 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 atatataaacacaataaaag 78 |||||||||||||||||||| Sbjct: 44377 atatataaacacaataaaag 44396
>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete sequence Length = 102135 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 aatatataaacacaataaaagaaa 81 |||||||||| ||||||||||||| Sbjct: 48443 aatatataaagacaataaaagaaa 48420
>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete sequence Length = 77923 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 aatatataaacacaataaaagaaa 81 |||||||||| ||||||||||||| Sbjct: 46129 aatatataaagacaataaaagaaa 46152
>gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complete sequence Length = 41775 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ataaaagaaacaacagctaggcaa 95 ||||||||||||||| |||||||| Sbjct: 31016 ataaaagaaacaacatctaggcaa 30993
>emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23, complete sequence Length = 180590 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aatatataaacacaataaaa 77 |||||||||||||||||||| Sbjct: 176776 aatatataaacacaataaaa 176795
>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete sequence Length = 217552 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 tcatggcttgatactggttttgac 408 |||||| ||||||||||||||||| Sbjct: 84017 tcatggtttgatactggttttgac 84040
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 aacacaataaaagaaacaacagct 89 ||||||||||||| |||||||||| Sbjct: 3821701 aacacaataaaagcaacaacagct 3821678
>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete sequence Length = 229410 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 atataaacacaataaaagaaacaa 84 ||||||||| |||||||||||||| Sbjct: 893 atataaacaaaataaaagaaacaa 916
>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence Length = 190233 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 atataaacacaataaaagaaacaa 84 ||||||||| |||||||||||||| Sbjct: 171827 atataaacaaaataaaagaaacaa 171804
>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete sequence Length = 232110 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aatatataaacacaataaaa 77 |||||||||||||||||||| Sbjct: 222230 aatatataaacacaataaaa 222249
>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete sequence Length = 156705 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 tatataaacacaataaaagaaaca 83 |||||||||||||||||| ||||| Sbjct: 113420 tatataaacacaataaaacaaaca 113397
>emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4 on chromosome X, complete sequence Length = 46930 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ctggaaccagtattcatagt 496 |||||||||||||||||||| Sbjct: 41580 ctggaaccagtattcatagt 41599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,254,490 Number of Sequences: 3902068 Number of extensions: 5254490 Number of successful extensions: 109026 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108661 Number of HSP's gapped (non-prelim): 365 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)