ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61j09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA 131 3e-27
2dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
5gb|AY108127.1| Zea mays PCO088339 mRNA sequence 50 0.008
6gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 44 0.49
7gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.49
8gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.49
9gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, comp... 44 0.49
10gb|CP000001.1| Bacillus cereus E33L, complete genome 44 0.49
11emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19... 44 0.49
12gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromo... 44 0.49
13gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chrom... 44 0.49
14gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.49
15gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome... 42 1.9
16gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4... 42 1.9
17gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complet... 42 1.9
18emb|Y11171.1|BC542A B.cereus bc542a gene 42 1.9
19gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 1.9
20gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 40 7.7
21gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosom... 40 7.7
22gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 40 7.7
23gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, co... 40 7.7
24ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin ... 40 7.7
25gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosom... 40 7.7
26gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome... 40 7.7
27emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete s... 40 7.7
28gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complet... 40 7.7
29gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, comple... 40 7.7
30emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chr... 40 7.7
31gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence 40 7.7
32emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P... 40 7.7
33gb|AC021649.18| Homo sapiens 3 BAC RP11-321F19 (Roswell Park Can... 40 7.7
34gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 7.7
35gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1... 40 7.7
36dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct i... 40 7.7
37gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E... 40 7.7
38ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase f... 40 7.7
39gb|AC018904.6|AC018904 Homo sapiens chromosome 15 clone RP11-50C... 40 7.7
40gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 7.7
41gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, comple... 40 7.7
42gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355... 40 7.7
43gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromoso... 40 7.7
44gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosom... 40 7.7
45gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14... 40 7.7
46gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24... 40 7.7
47gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complet... 40 7.7
48emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in... 40 7.7
49emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on ch... 40 7.7
50dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 7.7
51gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosom... 40 7.7
52gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, comple... 40 7.7
53emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chrom... 40 7.7
54emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chr... 40 7.7
55emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4... 40 7.7 
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score =  131 bits (66), Expect = 3e-27
 Identities = 215/264 (81%), Gaps = 3/264 (1%)
 Strand = Plus / Minus

                                                                        
Query: 284  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 343
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                                                        
Query: 344  ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 403
              | |||||||||||||| |||||||||||||| ||||||  |||   |||||  |||  
Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796

                                                                        
Query: 404  ttgaccaagggactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 463
            |||| |||| ||||||| ||| || ||||||||||||||||||||||||||  ||| | |
Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736

                                                                        
Query: 464  tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 523
             | ||||   ||||||||||||||||| |||  |||||| |  ||||||| |||||| ||
Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679

                                    
Query: 524  ccatggacaatagttgttgtgatg 547
            |||||| ||||| |||||||||||
Sbjct: 2678 ccatgggcaataattgttgtgatg 2655
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>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
            insert sequence
          Length = 3250

 Score =  131 bits (66), Expect = 3e-27
 Identities = 215/264 (81%), Gaps = 3/264 (1%)
 Strand = Plus / Minus

                                                                        
Query: 284  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 343
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                                                        
Query: 344  ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 403
              | |||||||||||||| |||||||||||||| ||||||  |||   |||||  |||  
Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796

                                                                        
Query: 404  ttgaccaagggactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 463
            |||| |||| ||||||| ||| || ||||||||||||||||||||||||||  ||| | |
Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736

                                                                        
Query: 464  tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 523
             | ||||   ||||||||||||||||| |||  |||||| |  ||||||| |||||| ||
Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679

                                    
Query: 524  ccatggacaatagttgttgtgatg 547
            |||||| ||||| |||||||||||
Sbjct: 2678 ccatgggcaataattgttgtgatg 2655
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  101 bits (51), Expect = 2e-18
 Identities = 158/193 (81%), Gaps = 3/193 (1%)
 Strand = Plus / Plus

                                                                           
Query: 355     ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaaggg 414
               ||||||| |||||||||||||| ||||||  |||   |||||  |||  |||| |||| |
Sbjct: 2667181 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 2667240

                                                                           
Query: 415     actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 474
               |||||| ||| || ||||||||||||||||||||||||||  ||| | | | ||||   |
Sbjct: 2667241 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 2667297

                                                                           
Query: 475     tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 534
               |||||||||||||||| |||  |||||| |  ||||||| |||||| |||||||| ||||
Sbjct: 2667298 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 2667357

                            
Query: 535     agttgttgtgatg 547
               | |||||||||||
Sbjct: 2667358 aattgttgtgatg 2667370
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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score =  101 bits (51), Expect = 2e-18
 Identities = 158/193 (81%), Gaps = 3/193 (1%)
 Strand = Plus / Plus

                                                                         
Query: 355   ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaaggg 414
             ||||||| |||||||||||||| ||||||  |||   |||||  |||  |||| |||| |
Sbjct: 92899 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 92958

                                                                         
Query: 415   actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 474
             |||||| ||| || ||||||||||||||||||||||||||  ||| | | | ||||   |
Sbjct: 92959 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 93015

                                                                         
Query: 475   tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 534
             |||||||||||||||| |||  |||||| |  ||||||| |||||| |||||||| ||||
Sbjct: 93016 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 93075

                          
Query: 535   agttgttgtgatg 547
             | |||||||||||
Sbjct: 93076 aattgttgtgatg 93088
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>gb|AY108127.1| Zea mays PCO088339 mRNA sequence
          Length = 666

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 109/137 (79%)
 Strand = Plus / Minus

                                                                       
Query: 318 cttttcagcagcttgtggctaggtgcggcgtggtcatccttatatagtgatgccgcagaa 377
           ||||||||||||||  ||||||| | | |||| || |||||||||| ||| |||||||| 
Sbjct: 217 cttttcagcagcttccggctaggcgggacgtgatcgtccttatataatgaagccgcagag 158

                                                                       
Query: 378 tcagacttcatggcttgatactggttttgaccaagggactggacagtctcaagtgcatct 437
           || |||| ||| |  ||||  |||   |||||||| ||||| | |||||| |  ||||||
Sbjct: 157 tctgactgcatcgtctgattttgggcctgaccaagagactgcagagtctcgatggcatct 98

                            
Query: 438 actgtaagctgccagcc 454
           || || |||||||||||
Sbjct: 97  accgtgagctgccagcc 81
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1934290 aaaagaaacaacagctatgcaacaag 1934265
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1897377 aaaagaaacaacagctatgcaacaag 1897352
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1897321 aaaagaaacaacagctatgcaacaag 1897296
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>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence
          Length = 252659

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     tcagaattttagactcacaaaa 43
              ||||||||||||||||||||||
Sbjct: 182509 tcagaattttagactcacaaaa 182488
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1955054 aaaagaaacaacagctatgcaacaag 1955029
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>emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19 on chromosome 6 Contains part
             of the PRIM2A gene for primase polypeptide 2A (58kD) and a
             novel gene, complete sequence
          Length = 138411

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 31    tagactcacaaaatcttccaga 52
             ||||||||||||||||||||||
Sbjct: 73780 tagactcacaaaatcttccaga 73801
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>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete
             sequence
          Length = 158234

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 31    tagactcacaaaatcttccaga 52
             ||||||||||||||||||||||
Sbjct: 31530 tagactcacaaaatcttccaga 31551
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>gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chromosome 6, complete
             sequence
          Length = 188415

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 31    tagactcacaaaatcttccaga 52
             ||||||||||||||||||||||
Sbjct: 36612 tagactcacaaaatcttccaga 36591
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1897254 aaaagaaacaacagctatgcaacaag 1897229
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>gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome 17, complete sequence
          Length = 171447

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    atataaacacaataaaagaaa 81
             |||||||||||||||||||||
Sbjct: 75101 atataaacacaataaaagaaa 75121
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>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete
              sequence
          Length = 258658

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     tatataaacacaataaaagaa 80
              |||||||||||||||||||||
Sbjct: 194672 tatataaacacaataaaagaa 194652
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>gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complete sequence
          Length = 197946

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   ttgagctggatccaagtttag 264
             |||||||||||||||||||||
Sbjct: 38287 ttgagctggatccaagtttag 38267
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>emb|Y11171.1|BC542A B.cereus bc542a gene
          Length = 2195

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 74  aaaagaaacaacagctaggcaacaa 98
           ||||||||||||||||| |||||||
Sbjct: 315 aaaagaaacaacagctatgcaacaa 291
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 74      aaaagaaacaacagctaggcaacaa 98
               ||||||||||||||||| |||||||
Sbjct: 2021940 aaaagaaacaacagctatgcaacaa 2021916
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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    aatgctgcactatttgtgct 478
              ||||||||||||||||||||
Sbjct: 120734 aatgctgcactatttgtgct 120753
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>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence
          Length = 197843

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    caacatatccattaacccat 527
              ||||||||||||||||||||
Sbjct: 175446 caacatatccattaacccat 175427
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>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 63    ataaacacaataaaagaaacaaca 86
             ||||||| ||||||||||||||||
Sbjct: 28965 ataaacataataaaagaaacaaca 28942
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>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    atataaacacaataaaagaaacaa 84
             ||||||||| ||||||||||||||
Sbjct: 63779 atataaacaaaataaaagaaacaa 63756
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>ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin isoform B (LOC488593),
             mRNA
          Length = 15600

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ttcctcttccgccgcctgct 148
             ||||||||||||||||||||
Sbjct: 12343 ttcctcttccgccgcctgct 12362
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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     aatatataaacacaataaaa 77
              ||||||||||||||||||||
Sbjct: 107679 aatatataaacacaataaaa 107660
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>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    ttttggccttttcagcagct 330
              ||||||||||||||||||||
Sbjct: 132132 ttttggccttttcagcagct 132151
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>emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete sequence
          Length = 24957

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tctacaatctacaatgctta 123
           ||||||||||||||||||||
Sbjct: 201 tctacaatctacaatgctta 182
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>gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complete sequence
          Length = 108878

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tacattcagaattttagact 36
             ||||||||||||||||||||
Sbjct: 58720 tacattcagaattttagact 58701
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>gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, complete sequence
          Length = 153260

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tacattcagaattttagact 36
              ||||||||||||||||||||
Sbjct: 111689 tacattcagaattttagact 111708
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>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
            ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene
            for transcription factor AP-2 alpha (activating
            enhancer-binding protein 2 alpha), four novel genes, a
            mitochondrial ribosomal protein L47 (MRPL47) pseudogene
            and 11 CpG islands, complete sequence
          Length = 180133

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  agcacttgctgtgttttggc 317
            ||||||||||||||||||||
Sbjct: 9698 agcacttgctgtgttttggc 9717
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>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence
          Length = 134105

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   tgttttggccttttcagcag 328
             ||||||||||||||||||||
Sbjct: 20428 tgttttggccttttcagcag 20447
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>emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P7 on chromosome Xq25-26.3,
             complete sequence
          Length = 103989

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   ctggaaccagtattcatagt 496
             ||||||||||||||||||||
Sbjct: 41570 ctggaaccagtattcatagt 41589
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>gb|AC021649.18| Homo sapiens 3 BAC RP11-321F19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 209521

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   agggactggacagtctcaag 430
             ||||||||||||||||||||
Sbjct: 28510 agggactggacagtctcaag 28529
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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     aatatataaacacaataaaagaaa 81
              |||||| |||||||||||||||||
Sbjct: 663290 aatataaaaacacaataaaagaaa 663313
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>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete
             sequence
          Length = 200690

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tataaacacaataaaagaaa 81
             ||||||||||||||||||||
Sbjct: 60240 tataaacacaataaaagaaa 60221
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>dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720474J21 product:unclassifiable, full insert
           sequence
          Length = 2262

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 63  ataaacacaataaaagaaacaaca 86
           ||||||| ||||||||||||||||
Sbjct: 172 ataaacataataaaagaaacaaca 195
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>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence
          Length = 169479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     aaacacaataaaagaaacaa 84
              ||||||||||||||||||||
Sbjct: 150216 aaacacaataaaagaaacaa 150197
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>ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-1)
            (lrs-1) mRNA, complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  tctacaatctacaatgctta 123
            ||||||||||||||||||||
Sbjct: 1809 tctacaatctacaatgctta 1828
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>gb|AC018904.6|AC018904 Homo sapiens chromosome 15 clone RP11-50C13 map 15q21.3, complete
            sequence
          Length = 158091

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  tggttttgaccaagggactg 418
            ||||||||||||||||||||
Sbjct: 5380 tggttttgaccaagggactg 5399
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>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     tataaacacaataaaagaaa 81
              ||||||||||||||||||||
Sbjct: 130361 tataaacacaataaaagaaa 130342
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>gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, complete sequence
          Length = 121496

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     atataaacacaataaaagaaacaa 84
              |||||||||||| |||||||||||
Sbjct: 114137 atataaacacaagaaaagaaacaa 114160
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>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete
              sequence
          Length = 173386

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    tggttttgaccaagggactg 418
              ||||||||||||||||||||
Sbjct: 169749 tggttttgaccaagggactg 169768
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>gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromosome 7, complete sequence
          Length = 163009

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     tacattcagaattttagact 36
              ||||||||||||||||||||
Sbjct: 151038 tacattcagaattttagact 151019
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>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete
             sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atatataaacacaataaaag 78
             ||||||||||||||||||||
Sbjct: 44377 atatataaacacaataaaag 44396
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>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
             sequence
          Length = 102135

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aatatataaacacaataaaagaaa 81
             |||||||||| |||||||||||||
Sbjct: 48443 aatatataaagacaataaaagaaa 48420
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>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete
             sequence
          Length = 77923

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    aatatataaacacaataaaagaaa 81
             |||||||||| |||||||||||||
Sbjct: 46129 aatatataaagacaataaaagaaa 46152
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>gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complete sequence
          Length = 41775

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    ataaaagaaacaacagctaggcaa 95
             ||||||||||||||| ||||||||
Sbjct: 31016 ataaaagaaacaacatctaggcaa 30993
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>emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23,
              complete sequence
          Length = 180590

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     aatatataaacacaataaaa 77
              ||||||||||||||||||||
Sbjct: 176776 aatatataaacacaataaaa 176795
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>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete
             sequence
          Length = 217552

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   tcatggcttgatactggttttgac 408
             |||||| |||||||||||||||||
Sbjct: 84017 tcatggtttgatactggttttgac 84040
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      aacacaataaaagaaacaacagct 89
               ||||||||||||| ||||||||||
Sbjct: 3821701 aacacaataaaagcaacaacagct 3821678
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>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete
           sequence
          Length = 229410

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  atataaacacaataaaagaaacaa 84
           ||||||||| ||||||||||||||
Sbjct: 893 atataaacaaaataaaagaaacaa 916
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>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence
          Length = 190233

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     atataaacacaataaaagaaacaa 84
              ||||||||| ||||||||||||||
Sbjct: 171827 atataaacaaaataaaagaaacaa 171804
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>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     aatatataaacacaataaaa 77
              ||||||||||||||||||||
Sbjct: 222230 aatatataaacacaataaaa 222249
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>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete
              sequence
          Length = 156705

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 60     tatataaacacaataaaagaaaca 83
              |||||||||||||||||| |||||
Sbjct: 113420 tatataaacacaataaaacaaaca 113397
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>emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4 on chromosome X, complete
             sequence
          Length = 46930

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   ctggaaccagtattcatagt 496
             ||||||||||||||||||||
Sbjct: 41580 ctggaaccagtattcatagt 41599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,254,490
Number of Sequences: 3902068
Number of extensions: 5254490
Number of successful extensions: 109026
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108661
Number of HSP's gapped (non-prelim): 365
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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